Genbank ID Gene Organism Gene_category Subcategory1 Subcategory2 Lineage WN1_1 WN1_2 WN1_3 WN2_1 WN2_2 WN2_3 W1 W2 W3 N1_1 N1_2 N1_3 N2_1 N2_2 N2_3 CK1 CK2 CK3 238756331 hyaluronidase Yersinia ruckeri ATCC 29473 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 1.011370403 0.974430093 0.922005916 0.947238511 0.911462617 0.959667845 0.935280397 0.913941613 1.002071495 0.928004285 0.952389797 0.948565918 0.923580618 0.929868559 0.920156313 0.934608504 0.999200182 0.977244615 358753816 ara Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.792151534 0.808304301 0.817399601 0.840803951 0.805183358 0.818546302 0.872282538 0.823559694 0.814553524 0.805036368 365911653 ccmL Klebsiella oxytoca KCTC 1686 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 1.007433149 1.03110792 0.998499112 1.038524782 1.001993705 1.037326622 1.001308205 0.95128068 0.968236836 1.010931813 1.011316046 1.013674204 1.009481753 1.014383503 0.978161216 0.992513883 1.021136954 1.009650101 116074691 Sir Synechococcus sp. RS9916 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.957834975 0.959832307 0.93299205 0.995894557 0.921888459 0.885916002 0.957929258 0.966999503 0.969883677 0.941832297 0.962858423 0.967989747 0.91291295 0.925063458 0.929016244 0.933377433 0.935409019 0.914007642 259454984 phospholipase_C_fungi Aspergillus fumigatus Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya; 0.912657866 0.823487318 0.765918543 0.839583232 0.869470405 0.81139265 0.831817882 0.848596161 0.836300488 0.830607662 299067540 cysI Ralstonia solanacearum CMR15 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 0.892657828 0.910259429 0.928358587 0.940218316 0.910383335 0.92697407 0.942769231 0.917375145 0.875540154 0.915417848 0.920915835 0.897505358 0.811225297 0.859855708 0.859060886 0.82057709 0.895787461 0.939846415 5453455 mnp Ceriporiopsis subvermispora Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Meruliaceae;genus:Ceriporiopsis; 1.109849297 1.113438089 1.020891432 1.099350925 1.061189381 1.070867414 1.0439472 1.032334312 1.075582535 1.054475704 1.050244963 1.046541941 0.977803653 1.033419201 0.983595414 1.038227952 1.090146123 1.114243693 349796086 fccab Thiorhodospira sibirica ATCC 700588 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 0.925456341 0.952178836 0.931296005 0.981085391 1.011818964 0.993529496 0.969351976 0.888922806 0.958913671 0.898471912 0.862112624 0.975020854 0.937382744 0.887404523 0.959005084 0.955059007 0.9837537 0.983662781 170720068 alginase Pseudomonas putida W619 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.00232588 0.973399043 0.977437544 1.000404221 0.987426875 0.992478805 0.9642505 0.990570827 0.965424739 0.971785905 0.951627417 0.95996747 0.962960709 0.896460047 0.904606895 0.935038167 1.001073584 0.990883513 331694506 mmox Pseudonocardia dioxanivorans CB1190 Carbon Cycling Methane Methane oxidation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.788689507 0.81165629 0.83251996 0.812816441 0.816972226 0.837261129 225682022 endochitinase Paracoccidioides brasiliensis Pb03 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 0.840811536 0.802840458 0.83483234 0.821429921 0.806425137 0.8447437 0.8359348 269791353 acetylglucosaminidase Thermobaculum terrenum ATCC BAA-798 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 1.070110704 1.067719139 1.056250953 1.056745277 1.044557482 1.085089504 1.02616169 1.049326174 1.067896838 1.062196337 1.039624433 1.045092346 1.022775355 1.031031756 1.010202644 1.008561417 1.0446007 1.042088569 413931729 one_ring_23diox Burkholderia sp. SJ98 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.835095493 0.884224648 0.838186291 0.85996855 0.832664529 0.785593423 0.842052177 0.872149829 157085507 cysJ Citrobacter koseri ATCC BAA-895 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 1.097765109 1.150085555 1.078781916 1.062864044 1.071007906 1.103183311 1.091819892 1.033441311 1.04781314 1.09913203 1.058115624 1.063365519 1.086882417 1.105111858 1.069467739 1.091346182 1.057278909 1.068994963 197730187 poba Streptomyces clavuligerus ATCC 27064 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 1.078687132 1.095794194 1.069135275 1.094561416 1.061931586 1.077734261 1.058443617 1.079463642 1.072857194 1.068338667 1.063420912 1.092960612 1.054523845 1.052637311 1.059121892 1.059425384 1.115486764 1.066238206 78102047 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.978748169 0.974989134 1.001535588 0.994054964 1.042366639 1.013966218 1.013481044 1.052381147 1.022174106 0.99003618 0.987083193 1.063966314 1.019454448 1.007111618 1.070252678 1.066180979 1.044931075 1.03924327 403205243 tfda Gordonia rhizosphera NBRC 16068 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 0.906662908 0.923621928 0.831431521 0.902679574 0.835423436 0.894132716 0.830908638 0.837880904 0.852405223 0.917997917 0.839875785 0.866170756 0.82130427 0.858001759 0.823039727 0.919323338 0.932431172 154156163 mult_ring_12DiOx Parvibaculum lavamentivorans DS-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 1.025525037 0.993313456 0.999925836 1.055061234 0.988920921 1.03320376 1.024554132 1.054500254 1.001985547 1.001107814 0.947923344 1.032789349 0.940000755 0.959334702 0.929168699 0.934011746 0.992855521 1.021276184 396928387 one_ring_23diox Rhodococcus sp. JVH1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.837043903 0.828779864 0.847545219 0.801899062 0.828201165 0.815548582 0.803956452 0.835774419 0.855156355 0.826280919 88703413 mer gamma proteobacterium KT 71 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 0.790981341 0.794914593 0.786816655 0.810562974 218291273 arsc Alicyclobacillus acidocaldarius LAA1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 1.192754258 1.210423954 1.18850106 1.151093596 1.148360914 1.177472131 1.133476552 1.149686863 1.149486684 1.172241653 1.181974557 1.156968953 1.122546648 1.151836195 1.127305315 1.218332269 1.167451618 1.192092119 179347374 chnb Methylobacterium populi BJ001 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 1.396130362 1.370318816 1.342887436 1.361365069 1.379013876 1.411297591 1.34956443 1.348130554 1.341910105 1.353948077 1.366980135 1.365036164 1.359250173 1.335767912 1.331685766 1.363862311 1.382116575 1.348082003 382946942 merb Mycobacterium abscessus M94 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 0.971183466 0.958892606 0.920922178 0.943301315 0.910703543 0.959840648 0.921974492 0.944768413 0.935879331 0.976399054 0.850084365 0.94349166 0.824511327 0.900299369 0.791274728 0.869474366 0.924916207 0.939250992 84381355 alkb Janibacter sp. HTCC2649 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 0.809898722 0.791178813 0.828680934 0.826339114 0.879957323 0.8608757 0.83586297 227497029 ppk Actinomyces urogenitalis DSM 15434 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 1.070172002 1.091582285 1.047189056 1.051395252 1.065666666 1.079656928 1.011837226 1.025542585 0.999353903 1.050313639 1.10429875 1.020344375 1.069494936 1.030156335 0.997158476 1.041040071 1.069005107 1.0567284 359295624 B_lactamase_A Halomonas sp. GFAJ-1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 0.954172441 0.931916971 0.955288644 0.954624302 0.927810972 0.964384841 0.934895214 0.904216643 0.960139397 0.944100534 0.94315173 0.979915495 0.939786151 0.941390929 0.926469659 0.931450535 0.954772663 0.960189547 169616370 glucoamylase Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 0.907786432 0.875834195 0.81926865 0.817937389 0.830020725 0.792100569 0.793711284 0.869978613 0.92109369 0.879326657 154334612 gdh Leishmania braziliensis MHOM/BR/75/M2904 Nitrogen Ammonification NA superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Leishmania;species:Leishmania braziliensis; 0.794469035 0.85155163 0.846404981 0.876991436 0.826254325 0.803836221 0.800588882 0.866799399 0.827550831 0.806812623 0.862910272 0.834281501 291486519 RgaE Bacillus subtilis subsp. natto BEST195 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 1.007298526 0.9694194 0.9729208 1.017740961 1.008901556 0.978768711 0.971992586 0.984429596 0.978692934 0.981573444 1.013941638 1.015644119 0.963689305 0.957431861 0.982983934 0.974627301 0.991722184 1.006346465 345015320 acetylglucosaminidase Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.303765637 1.274747136 1.255299411 1.278917204 1.233443358 1.268655884 1.239338044 1.242450569 1.249550431 1.235162958 1.228670888 1.26149483 1.23434948 1.208078174 1.193048713 1.251757997 1.278111335 1.24743433 325674082 ppx Rhodococcus equi ATCC 33707 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 0.955888302 0.975302986 0.938560844 0.959245593 0.930690329 1.022268828 0.929272494 0.925188306 0.940728472 0.996898766 0.964151414 0.931760486 0.908807638 0.932728667 0.884117839 0.901259236 0.968208411 1.000887799 115364871 chitinase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.919459938 0.927939655 0.893598281 0.931557115 0.890756643 0.891635826 0.86877038 0.872849786 0.91898766 0.930546091 0.893378818 0.950268582 0.883093329 0.904635529 0.926202804 0.882990183 0.921583592 353192324 cutinase Mycobacterium rhodesiae JS60 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.824290378 0.827443186 0.842948128 0.818382232 0.863537629 0.863070715 0.830580733 0.789747704 0.862369383 0.782238038 0.874495066 0.81203819 297585533 amyA Bacillus selenitireducens MLS10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 0.836704474 0.82248657 0.819210871 0.838179345 0.829647827 307583834 dehh109 Burkholderia sp. CCGE1003 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.829031773 0.807243807 0.83183302 148954201 cutinase Fusarium oxysporum Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 0.967969307 0.99020669 1.012247652 1.044689103 1.015386023 0.981088149 1.026164177 1.021746394 0.998456775 0.954048661 0.977418608 1.000318634 0.881965911 0.910449549 0.931185083 0.915141049 1.046307011 1.03074588 358752898 chitinase Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.853672313 0.907472078 0.900801895 0.851719157 0.851291393 0.853456496 0.81544091 0.890366953 0.885689369 0.884272877 0.850857763 0.775683356 0.822113851 0.87894969 0.904063941 116192823 pec_Cdeg Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 1.144243212 1.122272997 1.041068598 1.094845472 1.040604139 1.092393874 1.078287898 1.063899771 1.064199514 1.070181725 1.047327962 1.060319333 1.040493843 1.060973727 1.05272854 1.07138216 1.103658704 1.084940351 383933729 FBPase Rheinheimera nanhaiensis E407-8 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 0.795332704 0.791884983 0.802451337 0.783060869 0.781188763 383083208 amyA Leptospirillum ferrooxidans C2-3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum;species:Leptospirillum ferrooxidans; 1.086677544 1.076221479 1.059826717 1.141789539 1.109530931 1.092370688 1.114116759 1.135013145 1.12460436 1.064504957 1.083383917 1.116890135 1.037215855 1.033224907 1.010212857 1.050661235 1.120894284 1.110884902 189196512 glx Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 1.313628355 1.29547715 1.290317612 1.2873299 1.248428663 1.288808646 1.215608478 1.280079851 1.256829513 1.30044481 1.276151909 1.294990078 1.264556644 1.219834057 1.235154619 1.2275481 1.318360128 1.292997519 171680536 tannase_Cdeg Podospora anserina Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 0.86677492 0.899653944 0.821008951 0.871665633 0.821412172 0.846509214 0.819072382 0.861233123 0.850198688 0.818157176 0.821430094 0.85660413 0.817382545 0.94517411 121495610 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.893452587 0.811148406 0.767506836 0.815787767 0.83419958 0.804404743 0.821390264 0.80194034 0.83272038 0.799314566 320332969 mannanase Deinococcus maricopensis DSM 21211 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 1.387377009 1.341262217 1.340308623 1.357472705 1.332412469 1.346378079 1.311926214 1.337771326 1.342755954 1.323270834 1.32414605 1.341696043 1.313101745 1.290427381 1.22872129 1.299007569 1.364223112 1.31398743 114330729 amyA Nitrosomonas eutropha C91 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 0.86403627 0.79300187 0.829963893 0.857086204 0.83504005 0.785943184 0.800953414 0.798166973 0.8031548 0.85321518 0.795988367 0.812758978 0.843900865 0.849254366 229611240 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.959013401 0.87888855 0.95930554 1.010318109 0.942327274 0.935888803 0.967388656 1.028638677 0.95035598 0.924894336 0.914803872 0.957287578 0.901082065 0.864896479 0.888777176 0.914696134 1.003384948 0.912235885 296846742 amyA Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 0.846409966 0.838104855 0.851156423 0.860359711 0.879722223 0.859868243 0.852157818 0.904620796 0.799437706 0.773348663 0.894597142 145576103 phn Pseudomonas mendocina ymp Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 0.906985432 0.853740276 0.915159468 0.880662427 0.891894999 0.895875945 0.931348996 0.917475357 0.861428206 0.904438724 0.903539606 0.903841407 0.835462718 0.827802488 0.821052621 0.845110494 0.925242135 0.951823808 357406770 exaa(moxf) Methylomicrobium alcaliphilum 20Z Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium alcaliphilum; 0.971032639 0.948056986 0.913526514 0.925245786 0.894708129 0.914131835 0.896508028 0.896346386 0.930981499 0.944753221 0.926043372 0.931940292 0.896921922 0.937919467 0.838278069 0.875708097 0.924235633 0.946441625 407787065 nosz Celeribacter baekdonensis B30 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 1.158865511 1.157606289 1.19376405 1.19515024 1.167510233 1.171925556 1.189424275 1.216248326 1.187278915 1.172567869 1.146101885 1.190586008 1.132373174 1.123519927 1.124768193 1.157317896 1.177787667 1.144057997 254510744 arsm Rhodobacteraceae bacterium KLH11 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.899142612 0.843489914 0.849199526 0.882598844 0.827163919 0.820927986 0.848075603 0.851585178 0.856876173 0.79653606 0.818542086 0.773774725 0.801519399 0.812880294 0.85552656 0.915632287 17385460 narg Pseudomonas sp. Lgg10.5 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.876114431 0.864367266 0.884882503 0.907429173 0.912901937 0.89092891 0.891780044 0.866977825 0.863448694 0.873583675 0.876773548 0.897709897 0.843095171 0.892512871 0.920353457 424046193 nfsb_2 Vibrio cholerae HENC-03 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 1.013237547 1.053306894 1.020395023 1.068942394 1.074490188 1.05522768 1.0209407 1.011424741 1.022079802 1.071699156 1.031331658 1.065622903 1.052643383 1.001158511 1.009114932 1.049901094 1.026891662 1.034631782 192764476 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.104453515 1.084736474 1.035243308 1.101917413 1.044398976 1.081387047 1.031229203 1.073725423 1.057316246 1.063597092 1.036088593 1.048409538 1.047475281 1.0667556 1.008069152 1.055142252 1.08952817 1.078411999 345881645 acetylglucosaminidase Prevotella oulorum F0390 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oulorum; 0.804214795 0.811595588 0.787696321 0.815871691 319652870 CsoS1_CcmK Bacillus sp. 2_A_57_CT2 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.82038273 0.790736201 0.838675105 0.80735525 0.784436479 0.806752702 0.790566104 0.847626098 0.846585819 0.830395421 0.798271575 0.843233094 357006282 ccmL Paenibacillus larvae subsp. larvae B-3650 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 0.903225331 0.918759379 0.927727652 0.898917914 0.880652166 0.923251572 0.893019435 0.918871539 0.965146708 0.943592979 0.833797155 0.915607519 0.800416105 0.902208567 0.828858012 0.859809235 0.904936074 0.909563649 239820777 pcpe Variovorax paradoxus S110 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.225519187 1.173379604 1.19742035 1.201225597 1.176483266 1.201856367 1.201618883 1.194259575 1.187032155 1.169472034 1.181821716 1.195551813 1.179619592 1.158779374 1.182079141 1.21349982 1.202216804 1.160636243 229473031 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.784714945 0.805297118 0.832923784 0.830281937 0.820495787 0.765912832 260839753 FBPase Vibrio sp. RC341 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.863285537 0.819942552 0.805795604 0.869917891 0.835632236 0.909993853 0.858550481 0.796397686 0.830774098 0.80095651 0.838805679 312195127 xylg Frankia sp. EuI1c Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.937228749 0.991563673 0.94158029 0.974687921 1.001650885 0.982036075 0.951103267 0.940894514 0.950169392 0.979417014 0.979602479 1.00600431 0.992036599 0.969038153 0.95681796 0.97182276 0.984329831 0.976806601 110825410 cdh Rhodococcus sp. RHA1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.561140082 1.526557708 1.534366014 1.548922609 1.519863996 1.552258067 1.511019532 1.560968688 1.543105721 1.503146353 1.513434347 1.542092193 1.508742308 1.490228381 1.519252952 1.525960024 1.517369101 1.481899059 260651759 ara Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.152215233 1.084637414 1.110638502 1.098620409 1.150710219 1.176664735 1.135138535 1.158673053 1.12001643 1.147190382 1.117184415 1.113744589 1.119372608 1.089595259 1.101443484 1.085565581 1.147620567 1.111769476 325965169 RgaE Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.850615733 0.874988716 0.837768952 0.878318093 0.844120959 0.869104783 0.824842259 0.852497631 0.861180124 0.846393794 0.814693714 0.833205478 0.851086562 0.905970143 0.808138428 0.805441762 0.89059439 0.868320528 220904627 CsoS1_CcmK Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 1.049331525 1.010776267 0.998436904 1.027322256 1.018504704 0.991122964 1.007949378 1.027614615 1.012965516 0.959969022 0.966767546 0.990008824 0.995332613 0.929661999 0.947137076 0.972658718 1.00723571 0.977471243 194310701 dsra Prosthecochloris aestuarii DSM 271 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 1.113442188 1.03088601 1.073699833 1.153725829 1.067293694 1.070139856 1.093975012 1.095425436 1.096063755 1.067602517 1.090079923 1.099096046 1.03674145 0.990174887 1.012265048 1.035854324 1.136049156 1.067396791 39649069 tfth Rhodopseudomonas palustris CGA009 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.215055821 1.167026645 1.147549047 1.208210788 1.126978813 1.209751882 1.152524942 1.18397159 1.169965619 1.169664378 1.123822363 1.160093751 1.099651131 1.124987878 1.084016607 1.127384135 1.198100941 1.178669199 297155974 chitinase Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.941593708 0.915345907 0.896057129 0.944091224 0.915497853 0.951581467 0.994332799 0.914566708 0.931936887 0.873218598 0.928448149 0.937095354 0.908083106 0.923454376 0.908195324 0.88216733 0.925074507 0.923293945 321165281 cellobiase Granulicella tundricola MP5ACTX9 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 1.350289333 1.317579256 1.261086848 1.236890188 1.26430991 1.251934116 1.169316214 1.228749452 1.247171582 1.180375544 1.187892414 1.254032511 1.262011001 1.177709584 1.165272532 1.228405778 1.275916118 1.270990838 116067966 PRK Synechococcus sp. RS9916 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.967333283 0.989926882 0.971853363 0.947982339 0.951575881 0.989485782 0.930732852 0.99767767 0.968570235 0.986930926 0.937591662 0.950963163 0.927947912 0.984249104 0.903849219 0.943297163 0.941868882 0.949486263 50982466 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.9395131 0.8864727 0.88186728 0.910419267 0.88558101 0.916419028 0.853759417 0.85725303 0.898923079 0.865302684 0.888944948 0.856270427 0.88248587 0.833637854 0.844912027 0.840560979 0.943605894 0.914139219 148628249 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.915022883 0.865062983 0.888435681 0.931526607 0.892958516 0.917085168 0.879611388 0.891013932 0.872962093 0.886524029 0.793259231 0.83693967 0.804436539 0.882162899 0.910116435 15825442 chrr Bacillus subtilis Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.899619231 0.831261796 0.798310333 0.821777993 0.922371649 0.917143831 0.916586103 0.850242141 0.853915847 0.802252784 0.893795336 0.874910462 0.909503832 0.83879097 0.92577484 209401742 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.32119272 1.294215423 1.270868614 1.278211033 1.255737727 1.313218543 1.261786928 1.289618621 1.260505343 1.246774765 1.27014476 1.276393452 1.252778528 1.258267419 1.246058949 1.276392925 1.285872078 1.264642671 357402281 amyA Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.55765466 1.494943252 1.489571949 1.487670106 1.478221463 1.551044558 1.489139105 1.49312664 1.496324279 1.472242799 1.499891977 1.482152926 1.494835918 1.453931828 1.47896203 1.473963214 1.539753867 1.470328721 5441780 cumc Streptomyces coelicolor A3(2) Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.147299645 1.199503203 1.119462078 1.115312286 1.121164714 1.148779459 1.090406986 1.121450419 1.141911524 1.116596206 1.115841826 1.117234022 1.101509049 1.088428224 1.05272816 1.108763629 1.127568437 1.162225553 26278878 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.213615881 1.215231462 1.214885491 1.217074746 1.219726708 1.22935833 1.183531334 1.20642932 1.210382819 1.20545443 1.192768104 1.198518564 1.197061426 1.171658966 1.166828305 1.220164321 1.222952084 1.206929588 113730621 poba Caulobacter sp. K31 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.988196479 1.028735652 1.016060469 1.014605879 1.00825132 1.040451037 0.938150445 0.946195079 0.975895991 1.006444941 0.999914362 0.9705715 0.997965835 0.994209154 0.98456084 0.97662959 1.036345795 1.057513121 375141914 amyA Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.967195699 0.909119419 0.941454063 0.90314046 0.951653316 0.923039184 0.923248891 0.906169221 0.927577008 0.959051645 0.905827568 0.915729978 0.881610849 0.843521872 0.921439978 0.897629063 0.926413309 0.922277926 9716120 urec Streptomyces coelicolor A3(2) Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.184968773 1.128665698 1.13833763 1.157785459 1.131697532 1.164329559 1.10934692 1.149493045 1.154720516 1.119369824 1.124804594 1.127707472 1.101429739 1.108438854 1.065012677 1.095828409 1.186141198 1.156762555 70930914 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.125860026 1.090624554 1.102960708 1.108810182 1.050877914 1.064605747 1.07242995 1.089620675 1.099519742 1.100412965 1.076408515 1.112398895 1.062931658 1.049167873 1.042822849 1.0586406 1.125704776 1.091851395 56709218 dehh109 Silicibacter pomeroyi DSS-3 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.900281 0.897778085 0.899735347 0.936298845 0.896707523 0.915317197 0.906846737 0.878375572 0.842473303 0.889185607 0.879532991 0.865271404 0.825472573 0.849333003 0.881826786 0.984112715 27351775 soxY Bradyrhizobium japonicum USDA 110 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.911478497 0.805715697 0.802969974 0.808366258 0.859340216 0.832489673 0.865169586 0.86066513 0.822116627 0.80494598 0.846690276 0.831420164 1255504 nifh unidentified bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.287598605 1.265005473 1.248518992 1.284423544 1.265138737 1.240253787 1.230533665 1.240109534 1.247178272 1.26149913 1.247226745 1.286594768 1.241472145 1.225167002 1.207940046 1.188089126 1.258426383 1.20238717 357022852 alkb Mycobacterium thermoresistibile ATCC 19527 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 1.073673915 1.078493324 1.024071774 1.073241382 1.003066579 1.055555847 1.027583663 1.050244356 1.118233281 1.041936994 0.998677006 1.052511474 0.985960883 1.017565185 1.00120047 1.006162931 1.074289161 1.059037794 84383810 amyA Janibacter sp. HTCC2649 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 1.180032901 1.144751516 1.107333798 1.137767217 1.131746239 1.180634503 1.097744968 1.139509828 1.08201594 1.128493194 1.064542269 1.077579136 1.103326524 1.147319809 1.102796419 1.127313543 1.219884481 1.176756946 115401686 cutinase Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 1.025254002 0.963166319 1.022530392 1.025162219 0.995982219 1.01520857 1.041022932 1.04041626 1.030822256 1.006933666 0.956872988 0.98484012 0.980385093 0.967785756 0.940932799 0.922344436 1.000550251 1.028101221 177840389 RgaE Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.052472035 1.067402112 1.043578787 1.009131396 0.97279624 0.977732209 0.961910682 0.979305283 0.984534197 1.014146817 1.021008049 1.033326447 0.969107382 0.922650534 0.928583039 0.976128473 0.990891306 0.9845184 77465140 arsc Rhodobacter sphaeroides 2.4.1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.105044127 1.209716083 1.08925409 1.061762577 1.048367363 1.120938666 1.039311438 1.028005694 1.050195082 1.043156034 1.029939495 1.029625433 1.044039899 1.053788023 1.014867515 1.020331296 1.049399732 1.077660199 284042004 linb Conexibacter woesei DSM 14684 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 1.145201621 1.116297023 1.050648806 1.116719717 1.070210806 1.11095078 1.036091177 1.070433469 1.090848894 1.058848492 1.064319414 1.075596006 1.047161569 1.045025805 1.016332705 1.065122286 1.128794361 1.098229294 323454151 terc Aureococcus anophagefferens Metal Homeostasis Tellurium Detoxification superkingdom:Eukaryota;class:Pelagophyceae;genus:Aureococcus; 0.812194914 0.859409155 0.867350147 0.877144772 0.857924701 0.892539058 0.874162938 0.795566391 0.879244987 0.82517597 0.846292132 0.844612967 0.825668916 0.843703808 0.833307065 0.860963355 0.871762468 296028071 arsc Tsukamurella paurometabola DSM 20162 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 1.194913368 1.207864766 1.072741559 1.163810049 1.185641904 1.162093093 1.166914834 1.228388424 1.19229199 1.094075672 1.076292124 1.101971628 1.167653387 1.233604362 1.040669164 1.032316989 1.206427178 1.254437536 325128259 cysI Neisseria meningitidis N1568 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 0.774240411 0.790210406 0.85442342 259023519 alkb Rhodobacter sp. SW2 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 1.012340213 0.941362841 0.989470623 1.018715677 0.999464901 0.965155019 0.982609324 1.005291669 0.993293458 0.95730522 1.001717398 1.008987672 0.925260335 0.905032903 0.936309229 0.927919375 0.976093746 0.952883443 226366506 mhpa Rhodococcus opacus B4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.855333191 0.848603639 0.886426942 0.862640833 0.868754279 0.837345697 0.844693131 0.892933135 0.896473781 0.888367953 0.861366069 0.891833391 0.842791199 0.848653689 0.834067703 0.851475319 0.861729567 198260950 ara Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.809681215 0.847115183 0.837745262 0.827960989 0.904541134 0.84288291 0.876162869 0.821802302 0.845760271 0.853578804 0.803570051 0.81122643 0.802638127 0.85112093 0.836105089 156062912 lactase_fungi Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.907351726 0.812804403 0.861713291 0.856338791 0.812187239 0.838068185 0.860664622 0.820292948 0.859674514 0.925624412 0.913939579 0.848928691 0.821753177 0.856740115 0.795499168 0.875756634 0.842594797 0.88552099 113724267 nhh Sinorhizobium medicae WSM419 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.886220446 0.858342168 0.880788781 0.858311754 0.858851707 0.892443622 0.893259502 0.873346459 0.863118795 0.86675406 0.844009191 0.866965274 0.839789219 0.855190602 0.942397997 0.887248448 190574362 arsc Stenotrophomonas maltophilia K279a Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 1.449196443 1.423174149 1.342440159 1.429172394 1.303956036 1.483662562 1.328452315 1.344114488 1.35742176 1.415720552 1.364053294 1.414188951 1.334952582 1.374269071 1.317555673 1.390264043 1.450545363 1.407806801 154704313 protease_serine_fungi Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.998043575 0.955252096 1.00431546 1.012723582 1.0260436 1.004027238 1.030042554 1.021619394 0.982781134 1.011615136 1.02852679 0.989998684 0.99246098 0.951623219 0.890800581 0.937166767 1.025258308 0.990732812 398027245 trze Novosphingobium sp. AP12 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.903826116 0.863469032 0.875412747 0.875005154 0.847894855 0.878371303 0.836550318 0.838905024 0.845610132 0.817889691 0.835836102 0.927042887 0.862079971 344039093 catechol_b Streptomyces violaceusniger Tu 4113 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.835511099 0.829634503 0.886606963 0.829464924 0.808782481 0.81072634 0.83783573 0.828745192 33320448 dsrB Desulfacinum infernum Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulfacinum; 0.914303231 0.873031179 0.835108152 0.944609589 0.876830747 0.92424268 0.860026652 0.832324652 0.860124984 0.88579911 0.855775735 0.859444431 0.812849832 0.913040999 0.838068286 0.841547478 0.910419574 0.86067845 33386644 glx Ustilago maydis Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago; 1.040508107 0.817679953 0.945861334 0.813491301 0.856993425 0.790479249 0.848189134 0.822447096 0.823196575 0.880098942 0.990090797 0.779159383 94966431 amyA Brachybacterium sp. LB25 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium; 1.243551633 1.211674763 1.218505345 1.223592651 1.171418115 1.206383828 1.21078339 1.22105554 1.214714755 1.227808004 1.202760719 1.222450484 1.175844918 1.204531776 1.179005785 1.210209062 1.240396761 1.222376987 330971429 nhh Pseudomonas syringae pv. aceris str. M302273 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 0.871754015 0.834333296 0.840321756 0.842634486 0.850537017 0.807077881 1.029589782 0.869067446 0.842550784 0.819524005 0.85438587 0.831056957 0.863914063 356881553 chitinase Azospirillum brasilense Sp245 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.146829988 1.125494713 1.08270973 1.110930217 1.093567026 1.101928732 1.077053332 1.083844183 1.112887866 1.099424898 1.107991871 1.111552385 1.090742073 1.042156828 1.057483503 1.048665676 1.132781953 1.095720823 194343579 cellobiase Streptomyces sp. Mg1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.123477684 1.158429118 1.125758285 1.095126984 1.045462818 1.138441671 1.037013284 1.095650352 1.087095679 1.098256686 1.0925768 1.085632053 1.033150507 1.085267665 1.015363327 1.071189988 1.110811182 1.108355995 72161237 amyA Thermobifida fusca YX Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 1.322135442 1.327224194 1.295924511 1.30140605 1.285878486 1.339940162 1.302869165 1.311185776 1.276291404 1.313887839 1.30490072 1.293994152 1.237247863 1.266005892 1.234468426 1.292123038 1.277596652 1.289631556 165880013 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.910594096 1.069574332 0.95247982 0.981361685 0.929649709 0.982064906 0.920149241 0.950822406 0.899293276 0.995268305 0.940939418 0.937016875 0.945164576 0.933754076 0.894336295 0.943665387 0.948132346 0.974500517 259703991 FBPase Methylibium petroleiphilum PM1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.938449593 0.921938517 0.928690616 0.916487119 0.955089943 0.987977854 0.981032895 0.957110879 0.942498799 1.019018414 0.960938488 0.94177409 0.939785152 0.946994671 0.86367482 0.956708146 0.94060081 1.002143323 164455684 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.97293574 0.938023151 0.955813804 0.988887934 0.894893045 0.919167401 0.878122604 0.909318481 0.966653825 0.935072386 0.880934063 0.947478471 0.912653908 0.895845466 0.891717618 0.875478613 0.978243515 0.936001873 308919937 cysI Ralstonia sp. 5_7_47FAA Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 1.130522655 1.089054935 1.117636003 1.107087139 1.035699697 1.09136715 1.056615059 1.072190869 1.103387278 1.099148288 1.087994917 1.080063282 1.068904473 1.034747566 1.044938709 1.038392883 1.116118522 1.100066317 222543110 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 1.239555117 1.206916083 1.2183781 1.215354801 1.220569768 1.274610667 1.221304298 1.193946749 1.198348786 1.216854713 1.238389679 1.199603727 1.265551581 1.196686516 1.191220962 1.203538987 1.227812592 1.204330055 307742774 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.84750666 0.839824601 0.850961182 0.886435119 0.871534882 0.863007893 0.884447388 0.854674154 0.874130206 0.881623841 0.809300381 0.876334939 0.815641823 0.864542487 0.830679194 0.889870741 0.85803047 332297127 chitinase Treponema brennaborense DSM 12168 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 1.116580725 1.094618102 1.132000265 1.147569687 1.110663162 1.132383313 1.127941815 1.131666737 1.139337118 1.094119718 1.105976218 1.120911853 1.093854104 1.078446699 1.089550992 1.085022672 1.119303858 1.091159633 2588986 phdk Nocardioides sp. Organic Remediation Polycyclic aromatics NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 0.767982507 0.814423113 0.818255146 0.801396706 0.785168325 261284230 ara Geobacillus sp. Y412MC10 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.846226911 0.792752547 0.802341774 0.821573474 126708216 GAPDH_Calvin Sagittula stellata E-37 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 1.092186668 1.102838079 1.178503202 1.112169299 1.145250145 1.063544987 1.082582757 1.017854929 1.03934514 1.180472542 1.171263014 1.149832942 1.163852404 1.100213416 1.171122899 1.141290039 1.066920626 1.090241503 120603179 aps_apra Desulfovibrio vulgaris DP4 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 0.922428434 0.844326327 0.890233924 0.946953814 0.878886981 0.884099234 0.810314339 0.871224846 0.907320007 0.885104033 0.850223092 0.88703295 0.866122033 0.873606199 0.862566178 0.854440593 0.952098263 0.872463959 315590110 amyA Intrasporangium calvum DSM 43043 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 0.854379177 0.811856681 0.889490571 0.890958168 0.930327357 0.855531301 0.922818892 0.948102294 0.869453242 0.887544173 0.88734702 0.918720611 0.914283164 0.864438478 0.970159325 0.844581745 0.889008042 149357989 linb Marinobacter algicola DG893 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 1.148422292 1.139370836 1.216967521 1.162308909 1.170779754 1.142915368 1.138838672 1.123929536 1.130265536 1.208223959 1.127236116 1.142831975 1.117915073 1.0739761 1.100997814 1.134720321 1.163250318 1.093911282 23429039 exoglucanase Cochliobolus heterostrophus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Cochliobolus; 0.921824863 0.927777056 0.873109105 0.933515216 0.892491361 0.885138012 0.906079543 0.811126232 0.933041768 0.906693486 0.871337668 0.917904536 0.908325117 0.885279682 0.84772607 0.9181215 0.904913837 353210191 fccab Hyphomicrobium denitrificans 1NES1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.936734816 0.963277278 0.99552465 0.959322856 0.988988729 0.94442287 0.916471978 0.881383524 0.920813644 0.923476056 0.914183618 0.905877861 0.916825697 0.86821058 0.982945928 0.904202329 0.936080269 0.898037675 34014589 exoglucanase Athelia rolfsii Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Atheliales;family:Atheliaceae;genus:Athelia; 0.897266579 0.834637595 0.830193901 0.892804106 0.832248203 0.833083871 0.856618409 0.843413155 0.880208535 0.822881457 0.848444565 0.81065565 0.867228434 0.904854806 351592049 pcpe Pelagibacterium halotolerans B2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 0.76617036 0.82543534 0.809034501 0.819751618 377559541 amyA Gordonia otitidis NBRC 100426 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 0.912623122 0.992903412 0.9780762 0.907633308 0.876063959 0.932867913 0.847870522 0.883912806 0.956656332 0.944155168 0.917968983 0.866300236 0.838004281 0.922023148 0.860872561 0.881794149 0.919781676 0.922702075 90420163 terc Aurantimonas sp. SI85-9A1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 0.906567814 0.917191776 0.891920191 0.927853998 0.887631034 0.897174372 0.939703708 0.855914663 0.880883342 0.92859607 0.947399223 0.935074179 0.936650833 0.877169157 0.861790554 0.916392213 0.910875395 0.877364625 384192350 amyA Bifidobacterium animalis subsp. lactis CNCM I-2494 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 0.861858771 0.891887306 0.849237045 0.866428429 0.837410497 0.884824848 0.824663118 0.834844855 0.825045723 0.882820883 0.923437171 295091675 ccmL Clostridium cf. saccharolyticum K10 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 0.782647993 0.797641602 0.791928828 0.853442005 0.894820048 0.856207552 0.852990559 0.837697596 0.85613696 0.844389606 0.82026952 0.780878184 0.838987749 0.864681933 254423965 amyA Synechococcus sp. PCC 7335 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.855916331 0.876039906 0.85752235 0.858620681 0.882485901 0.902611709 0.827816283 0.855185215 0.895843989 0.905872627 0.845434464 0.860878136 0.87874986 0.840886031 0.862173091 0.922851843 0.911362449 386691635 terc Micromonospora lupini str. Lupac 08 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 0.934623715 0.8918175 0.846171149 0.892168663 0.87614191 0.896653615 0.858017162 0.879888322 0.895220476 0.875827505 0.871272102 0.873109682 0.889629483 0.900887771 0.913457692 37522894 GAPDH_Calvin Gloeobacter violaceus PCC 7421 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 1.184675232 1.1827686 1.126439873 1.178808614 1.156951496 1.167369662 1.133466541 1.159309535 1.17879265 1.139268048 1.16552869 1.180741426 1.133521809 1.135557882 1.103668547 1.096910099 1.139059225 1.143830889 256360247 ara Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.112189402 0.985606844 1.112274091 1.078244995 1.118439116 1.092632871 1.07944733 1.093174181 1.086959379 1.113354698 1.151605185 1.112779011 1.043798405 1.070486574 1.072672165 1.065599918 1.114058031 1.130307251 226358398 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.836238736 0.843351007 0.934321602 0.947226554 0.949546774 0.93065168 0.923283609 0.971595858 0.920565789 0.893692471 0.912835899 0.945889023 0.91607938 0.917765205 0.938118795 0.945747548 0.905186963 301109681 pectin_lyase_Oomycetes Phytophthora infestans T30-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 0.992080125 1.003106885 0.930657997 1.026879924 0.93136269 0.961913485 0.911079222 0.94634719 0.9493945 0.940023368 0.898147798 0.931920063 0.906235355 0.906264162 0.889724561 0.935758977 1.009409592 0.974967031 189207875 phospholipase_D_fungi Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.881111094 0.888221335 0.855189082 0.891238798 0.861773658 0.912292643 0.895450819 0.875321425 0.89811136 0.903002454 0.87639436 0.902990351 0.80968037 0.866301691 0.83659561 0.833730247 0.910103051 0.952622268 38427030 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.970145107 0.925105379 0.94994489 0.920216457 0.957470889 0.950365191 0.931168639 0.919152563 0.949672992 0.93369883 0.916820011 0.902288666 0.943149796 0.951766355 1.01691982 0.934535213 0.941920923 0.935851773 398206251 bphF1 Pseudomonas sp. GM74 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.806517267 0.831721265 0.841034894 0.785817404 0.817930836 0.836372086 0.846673315 374702215 one_ring_12diox Pseudomonas sp. S9 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.891387891 0.879758319 0.879526041 0.852342317 0.932667846 0.908998083 0.891564306 0.900893973 0.873579719 0.880957925 0.873255014 0.882246044 0.837279878 0.844417534 0.844905486 0.919562447 0.823872936 308737199 narg uncultured prokaryote Nitrogen Denitrification NA 0.785244138 0.791852533 385669582 urec Streptomyces tsukubaensis NRRL18488 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 1.013241127 0.929976503 0.956871746 0.973737776 0.989971727 0.958986092 0.944369681 0.955565963 0.976011785 0.963183837 0.938168886 0.936441128 0.946730139 0.9160784 0.873807293 0.891731678 0.962577063 0.968501352 260222561 dehh Curvibacter putative symbiont of Hydra magnipapillata Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 0.881308309 0.857505164 0.876122689 0.957186754 0.919271511 0.911119926 0.964790956 0.934100343 0.926272703 0.951165753 0.923668105 0.943538192 0.889924353 0.919085831 0.849414013 0.894877608 0.923306378 0.918663095 54027836 arsc Nocardia farcinica IFM 10152 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.060491903 1.009548262 1.036406632 1.008345647 1.030104106 1.02870536 1.008267401 0.993954331 1.023920544 1.035156101 1.012507259 0.996987294 1.000901095 1.045299577 1.024362247 0.956667037 1.033314477 1.034444932 163738626 FBPase Phaeobacter gallaeciensis BS107 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 0.875979547 0.993119081 0.866618382 0.966759814 0.818163491 0.815684959 0.815942519 0.840251984 0.826630177 0.875032491 0.863874982 0.86081 0.83594861 0.797371371 349700190 TIM Gluconacetobacter europaeus LMG 18494 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 1.365122223 1.310376206 1.329398352 1.329036823 1.291150118 1.316786824 1.285418444 1.338338331 1.314067109 1.300351623 1.314441552 1.32743507 1.288290519 1.27829921 1.291887392 1.310448941 1.326946119 1.308539232 51870942 endochitinase Rhodothermus marinus Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus; 1.603311944 1.577679117 1.554182825 1.57719088 1.555101714 1.593796768 1.545351916 1.579583964 1.556681691 1.549112927 1.552149174 1.580676738 1.524029629 1.527870515 1.542698348 1.549126564 1.564971363 1.512984784 359400716 vdh Novosphingobium pentaromativorans US6-1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 0.823295692 0.782605279 0.839606335 0.826123556 0.835785698 0.846628597 0.823395948 0.853934723 0.84141846 0.808676603 0.8284603 77378693 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.789315173 0.814560906 0.828850309 0.839889093 0.926090771 0.828126255 334696529 merb Corynebacterium ulcerans 809 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 1.277642407 1.263084032 1.276802055 1.288342169 1.278038707 1.314273594 1.285234126 1.272530092 1.225304925 1.255090329 1.264319934 1.255855652 1.22283966 1.231209791 1.205094673 1.247294399 1.280722773 1.266820608 261407519 cysJ Paenibacillus sp. Y412MC10 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.799264537 0.831548892 0.824737962 0.833800866 0.962702613 0.801901746 0.83742991 0.905761355 0.83223228 0.800323475 0.891157204 0.819006682 365423675 ara Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.872650279 0.896396741 0.927983968 0.911957838 0.894730129 0.913018233 0.890078941 0.915953777 0.912925112 0.928244074 0.851280632 0.912509058 0.868533241 0.945043883 0.840313324 0.910775815 0.965700053 0.947822164 51246881 ccmL Desulfotalea psychrophila LSv54 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 1.003555518 0.990767047 0.99432234 1.018223425 0.991360184 0.997812213 0.965718596 1.005724071 0.995166026 0.985745687 0.95271781 0.993347181 0.983817255 0.954602161 0.977770287 1.001732395 1.016936047 0.959370208 299767098 mnp uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 1.053595138 1.031859987 1.052394855 1.097674701 1.073015355 1.076818223 1.008025316 1.020321001 1.050539093 1.002520564 1.016582439 1.041548015 1.018985581 0.975064088 0.998867614 1.01214865 1.104139769 1.037420076 187476816 cysI Bordetella avium 197N Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 0.883296509 0.963426634 0.869767785 0.881416974 0.875342687 0.910228675 0.852074092 0.801854994 0.79898753 0.922088979 0.84358967 0.862307543 0.890252317 0.86118039 0.85094975 0.849531668 0.874483089 0.903629985 357386552 urec Pelagibacterium halotolerans B2 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 0.841433801 0.927420812 0.884423449 0.878626325 0.88509648 0.893130932 0.856661483 0.871332169 0.813381343 0.929689908 0.833410721 0.881496704 0.909340243 0.866695814 0.849678209 0.878450161 0.859454032 0.9058181 170144434 xyla Burkholderia graminis C4D1M Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 1.030317244 1.046107377 0.95495506 1.049940106 0.947943819 1.012117373 0.941116134 0.929838596 1.00360841 1.003135985 0.967768812 0.977769412 0.955858367 0.971176909 0.935124401 0.995439432 1.056037335 1.035318682 299140842 amyA Prevotella oris C735 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 0.834353702 0.811721465 0.864890483 0.920533517 0.841929642 0.81058713 0.849387105 0.88864853 0.881371775 0.81882804 0.947798185 0.866857433 0.834939609 0.842689215 0.798375383 144425 exoglucanase Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 0.93501075 0.950718378 0.912630476 0.960711788 0.923248234 0.920403651 0.897281889 0.869789219 0.944249546 0.93632122 0.933949111 0.895367415 0.882686329 0.90744917 0.891170962 0.842259571 0.96933211 0.962764758 90195860 limeh Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.31223856 1.288514178 1.280654073 1.262396679 1.252259742 1.291228593 1.237762852 1.237095947 1.269497129 1.286261031 1.269605043 1.277685369 1.238971668 1.259458604 1.231047454 1.243800932 1.28729418 1.28793427 325066972 amyA Actinomyces oris K20 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces oris; 0.968814501 0.999579408 0.93522311 1.01186182 0.932104948 0.99630443 0.902852308 0.938954542 0.949692012 0.947428577 0.947067819 0.941508887 0.903802033 0.942964171 0.852671242 0.90438085 0.978327002 1.018385223 190891477 narb Rhizobium etli CIAT 652 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.222584195 1.212613278 1.182808914 1.216820778 1.202134965 1.213024767 1.171912785 1.199159503 1.175583303 1.181177072 1.165751302 1.200680443 1.169112662 1.163096393 1.073740544 1.181662577 1.218943683 1.192013742 73534357 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.991642601 0.946933519 0.887177219 1.022917169 0.914774628 0.976629479 0.914863303 0.987222072 0.990225652 0.973720905 0.929432827 0.982578117 0.911093946 0.92502471 0.938667257 0.953895557 0.976298222 0.97246801 308750400 amyA Enterobacter cloacae SCF1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 0.907911005 0.938244441 0.910391775 0.903544515 0.946787307 0.921763213 0.921400427 0.904866959 0.948862081 0.911417758 0.942409058 0.917950232 0.913743492 0.840532058 0.818560872 0.854995748 0.895217091 0.906385648 83317100 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.256612403 1.24063992 1.214243011 1.250426813 1.227277205 1.253901726 1.22720765 1.206487016 1.225928618 1.232311126 1.228871361 1.245563141 1.210326109 1.212413935 1.257314698 1.217898091 1.267738015 1.207200513 114705586 arylest Fulvimarina pelagi HTCC2506 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 0.949334459 0.926544826 0.957313029 0.983242724 0.857721566 0.893355104 0.89757612 0.957688435 0.936144543 0.902117476 0.890887221 0.932781593 0.901298708 0.908882247 0.858591654 0.898370505 0.937165338 0.912343343 123988417 fthfs Microscilla marina ATCC 23134 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 0.910529344 0.851695152 0.838435736 0.898777905 0.919299073 0.828662005 0.901873448 0.856649175 0.905880179 0.896485554 0.937230071 0.904516545 0.836195499 0.851051205 0.821111456 0.862221223 0.903103841 94983265 silicon_transporter NA Metal Homeostasis Silicon Transport 0.827027725 0.841896897 0.852918914 0.811855803 0.911329067 0.851990589 0.823093611 0.805687117 0.867006073 0.867308855 118194172 urec Cenarchaeum symbiosum A Nitrogen Ammonification NA superkingdom:Archaea;phylum:Thaumarchaeota;order:Cenarchaeales;family:Cenarchaeaceae;genus:Cenarchaeum;species:Cenarchaeum symbiosum; 0.800687408 0.87622824 0.867609081 0.838558663 0.862820711 0.827188055 0.810277327 0.901470512 0.818687166 0.889343377 0.77620469 0.809802517 0.795909457 0.843617227 359819737 cutinase Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.940977415 0.885260694 0.933906077 0.981215763 0.886976124 0.92384026 0.903809459 0.94433313 0.97027138 0.906660355 0.879989513 0.932252338 0.890931659 0.87844169 0.832188658 0.89479758 0.937654886 0.919457267 258571131 ppx Uncinocarpus reesii 1704 Phosphorus Polyphosphate degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 0.975307134 0.958188893 0.931459974 1.02960016 0.950530422 0.948472164 0.931490154 0.927673835 0.97358267 0.940146463 0.945773158 0.953005083 0.940559515 0.921597888 0.944385839 0.94558532 0.977397953 0.948032513 151939786 chitinase Vibrio sp. Ex25 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 0.955559137 0.888609647 0.893530161 0.879207244 0.813443328 0.84949004 0.89779521 0.86367779 0.872375676 0.864454405 0.885911145 0.840895591 0.813708081 0.840626091 0.865109934 0.867916504 375007837 chrr Geobacillus thermoleovorans CCB_US3_UF5 Metal Homeostasis Chromium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermoleovorans; 1.031572849 0.99147038 1.055195837 1.057168459 1.075030189 1.057687368 1.029075722 1.133452832 1.055783453 1.046243191 1.060236925 1.063002283 1.02192185 1.007098271 1.076410149 1.015923519 1.064365085 1.020003173 3402328 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.51060812 1.484830704 1.467346665 1.467285943 1.458497542 1.500596647 1.463105819 1.470205 1.456692971 1.452015747 1.462830113 1.458062461 1.427712908 1.429414693 1.445898454 1.434586298 1.478556273 1.45384607 262198322 pula Haliangium ochraceum DSM 14365 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 1.09187876 1.136825331 1.081651852 1.078458794 1.103521067 1.124429084 1.109473254 1.11984279 1.092921237 1.096334415 1.151419217 1.081169398 1.106985003 1.052709327 1.102421171 1.070021225 1.084990406 1.095248336 313104774 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.069911688 1.088005506 0.969348823 1.052656237 1.003913617 1.064581937 0.93504104 0.869662516 1.064711238 1.070563185 1.02337191 1.075765799 0.985322268 1.050371978 0.974366003 0.967869785 1.054054179 1.064296264 260862024 ppx Selenomonas sputigena ATCC 35185 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 0.778359188 0.827007295 60475984 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.960487866 0.980335499 0.97178353 0.951396492 0.975479079 0.952140668 0.957680871 0.977705098 0.963045877 0.934831322 0.979515111 0.930729633 0.886598909 0.863103529 0.879933175 0.883161205 0.957001375 1.001901218 150034100 nifh Methanococcus maripaludis C7 Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 0.818439069 0.83883987 0.869115592 0.873274019 0.866607608 0.791280762 0.865220797 0.87310023 0.877832604 0.889295049 0.85181984 0.840202471 0.848718653 0.828327385 120593974 nitrilase Polaromonas naphthalenivorans CJ2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1.111272983 1.177406296 1.130125387 1.144960734 1.122368565 1.141141508 1.053464758 1.090227426 1.102671959 1.108995024 1.12570819 1.116599397 1.09056102 1.091778522 1.068856682 1.101204209 1.16456988 1.13742991 124257911 tutfdg Geobacter sp. TMJ1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 0.787209757 0.832981455 0.824065581 0.789429073 0.827425764 0.851110415 0.844639634 0.821234878 0.833408854 86611381 vana Rhodococcus sp. DK17 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.44829713 1.4197265 1.41411053 1.405402387 1.390405456 1.463213296 1.382023043 1.394305657 1.388080462 1.386685886 1.403244913 1.378449094 1.380306482 1.363426042 1.36028932 1.370355647 1.430041563 1.40093514 298541547 pgk Bartonella quintana Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella; 1.043387432 0.937233871 0.921828112 0.932225737 0.890523 0.885769704 0.883617757 0.897933277 0.923398866 0.928125613 0.940236705 0.947282724 0.897348951 0.889423037 0.881358987 0.910140543 0.952861339 0.91019609 113526287 arylest Ralstonia eutropha H16 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.79181052 0.847813896 0.821397629 0.836785742 0.843375727 0.8107016 0.843085955 0.888344792 0.885826615 0.844794498 0.831249571 0.903929495 0.856541259 0.901733711 0.839578044 325301860 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.929607546 0.980850727 0.927863562 0.930817767 0.9384969 0.934560175 0.898399055 0.851760636 0.930686038 0.919739881 0.903234155 0.901762602 0.816344033 0.855008703 0.874851808 0.871503012 0.944353593 0.974935207 290570387 amyA Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 0.995448451 0.961707023 0.97079887 1.002848401 0.900094197 0.968094094 0.918706115 0.951220523 0.965752519 0.963289547 0.93593592 0.95777041 0.918927419 0.930301084 0.910868086 0.907635579 1.009388298 0.985704501 257323051 pec_Cdeg Colletotrichum gloeosporioides Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella cingulata; 0.8089969 0.845826522 0.831852062 0.80240266 0.820484785 0.810393469 0.818586216 0.841411924 21388681 one_ring_23diox Rhodococcus sp. YK2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.984814364 1.002203591 0.970963137 0.967805051 0.899635478 0.965906779 0.908669489 0.966405446 0.961560866 0.964215758 0.944350385 0.948721489 0.910734119 1.002608365 0.869293036 0.93296059 0.964426112 0.98799716 54017000 catechol Nocardia farcinica IFM 10152 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 0.887149745 0.931197588 0.913189545 0.91565495 0.908203542 0.905697713 0.925673813 0.940379375 0.86969021 0.860734271 0.84733211 0.908434863 0.919996784 0.836370879 0.850830642 0.82536622 0.915769982 1.316833177 356879587 nirb Azospirillum brasilense Sp245 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.053315362 1.032780356 0.98137518 1.021039605 0.979142191 1.00297245 0.954625356 0.996867451 1.027329891 1.00148643 0.921906957 1.033135018 0.921959424 0.948812802 0.961376945 0.973965656 1.03419742 1.052861494 117618319 nrfa Aeromonas hydrophila subsp. hydrophila ATCC 7966 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 0.826316029 0.911863375 0.874203 0.888470682 0.8789183 0.854911463 0.841022051 0.766464954 0.853138713 0.851558999 0.861246132 0.833308728 0.844632891 0.871602532 0.880320334 197322318 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.169630421 1.150416629 1.135200754 1.142598997 1.139009024 1.150598738 1.118028339 1.086847496 1.140826617 1.134017888 1.117558263 1.126916453 1.14954141 1.114629389 1.093396209 1.104692405 1.166670849 1.138322172 229335584 Sir Vibrio cholerae 12129(1) Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 1.383094247 1.331369689 1.346254276 1.374543538 1.357008351 1.367745038 1.339018185 1.388128827 1.35880086 1.344183777 1.336257164 1.408853863 1.307250615 1.326294023 1.326264785 1.362065492 1.351155906 1.319410048 383650756 catechol Streptomyces chartreusis NRRL 12338 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces chartreusis; 0.869735116 0.86533373 0.853413313 0.879949923 0.829056788 0.873843892 0.809533538 0.875011948 0.826686697 0.836998598 0.822255874 0.880732623 0.898178785 320135938 amyA Actinomyces sp. oral taxon 171 str. F0337 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 171; 0.881093587 0.860216077 0.860350414 0.946021008 0.828018328 0.843824588 0.928198333 0.906676686 0.858990169 0.9004597 0.891173044 0.938669975 0.87300594 0.880651601 0.903881257 0.910290573 0.885958373 15021242 tfda Streptomyces coelicolor A3(2) Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.802476983 0.788304138 0.821807708 0.834750356 239839367 amyA Micrococcus luteus NCTC 2665 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 1.288190436 1.306541759 1.269344965 1.260881711 1.252297526 1.258453803 1.256637822 1.250686469 1.275483773 1.267989058 1.225308888 1.290764803 1.245165871 1.239597076 1.196549357 1.211953029 1.259975373 1.318648648 145303444 cellobiase Salinispora tropica CNB-440 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.887699954 0.871619205 0.892159565 0.942564608 0.923538176 0.846536879 0.871895366 0.889821776 0.904515632 0.869993199 0.841152355 0.876353337 0.885290504 0.820025521 0.859297124 0.8591641 0.91669024 0.896175114 380512214 amyA Xanthomonas sacchari NCPPB 4393 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 0.96927677 1.004697909 0.976255145 0.96477182 0.921033897 1.010993592 0.972727763 0.950403655 0.962644563 0.960471086 0.939793215 0.940695969 0.928940138 1.003710316 0.898532802 0.924158776 0.921665833 1.002585748 223714290 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.015272802 1.027965051 1.028913238 0.986683059 1.004166569 1.038892491 1.008523898 0.970038299 0.993249579 1.055040881 1.085289261 1.002051438 1.011501025 1.017702363 0.969044466 0.976623277 0.977157773 1.024516985 357935650 catechol Burkholderia sp. YI23 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.836953252 0.78920635 0.812834837 0.808317972 0.825256144 0.786671611 0.841562319 0.84362981 222099746 pula Thermotoga neapolitana DSM 4359 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 0.793285531 0.882392409 0.878579925 0.874225172 0.854064286 0.784970123 0.868276778 0.865197879 0.847333657 0.833433012 0.843179848 118424413 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.892843576 0.848770353 0.830645671 0.910361397 0.824329933 0.878841511 0.81046416 0.839938438 0.872905193 0.882198504 0.854677758 0.850055926 0.891792061 0.8588908 356882675 nagg Azospirillum brasilense Sp245 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.157157145 1.151898485 1.103541523 1.134039988 1.117702072 1.145166773 1.101071667 1.117900867 1.137010334 1.124216282 1.114158235 1.136244382 1.11016128 1.109523374 1.116832154 1.124536172 1.155910035 1.118597315 167945384 ppx Endoriftia persephone 'Hot96_1+Hot96_2' Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 1.011773836 1.02949135 0.988085709 1.058661869 0.969284376 0.96033383 0.982472311 1.008857314 1.027584181 1.021304793 1.004234279 1.062715085 0.975587492 0.953736256 0.96963821 0.955175002 1.00463626 1.037808754 298251924 endoglucanase Ktedonobacter racemifer DSM 44963 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 1.101908794 1.127655429 1.030062821 1.10211027 1.05501305 1.105667475 1.043614283 1.066602777 1.049301038 1.052289372 1.033008498 1.029620167 1.042897178 1.036098784 1.019118787 1.03375503 1.065452172 1.088771142 77459481 terc Pseudomonas fluorescens PfO-1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.804705152 0.804341501 0.842066737 0.881691063 0.850590686 0.82685055 0.848359175 0.826389255 0.900582327 0.824686142 0.807201051 0.837277853 0.796431277 0.857476652 54013570 cutinase Nocardia farcinica IFM 10152 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 0.959452481 0.959698822 0.944001598 0.979671709 0.905778828 0.946919125 1.033685235 0.891087202 0.955301378 0.966930451 0.93257374 0.918761942 0.903650846 0.947722287 0.866304221 0.926728493 0.977603618 0.981758139 307352853 dsra Methanoplanus petrolearius DSM 11571 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoplanus;species:Methanoplanus petrolearius; 0.898123217 0.905989266 0.90456894 0.948635863 0.824485965 0.879122896 0.86495273 0.930059543 0.909123014 0.882336755 0.849775143 0.903276112 0.778884663 0.835472431 0.842119774 0.856545196 0.881959727 0.909534607 380766219 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 1.654466049 1.614354691 1.609911873 1.611882993 1.595317997 1.624046551 1.588306541 1.580678177 1.610347541 1.590362757 1.60150948 1.611521757 1.572442026 1.554557052 1.569887874 1.581956321 1.623426261 1.566020143 379057283 Sir Serinicoccus profundi MCCC 1A05965 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 0.820328769 0.81351884 0.830546822 0.809624103 0.86832062 0.853541043 294980602 b_lactamase Zunongwangia profunda SM-A87 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zunongwangia;species:Zunongwangia profunda; 0.811432176 0.814798471 325918857 ppx Xanthomonas vesicatoria ATCC 35937 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 1.135488287 1.126386789 1.152699793 1.147519885 1.143107133 1.138148284 1.164938564 1.163782676 1.136848864 1.098508619 1.130956119 1.115477264 1.083021295 1.020272291 1.057302101 1.086472946 1.139581648 1.108698314 304310494 tehb gamma proteobacterium HdN1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.87107667 0.828199345 0.85366663 0.868061626 0.816123202 0.843866285 0.840705429 0.856822728 0.887264969 1.027886088 0.838473339 0.852008898 0.85938477 0.851695351 225194133 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.974058192 0.886511418 0.934955405 0.960863065 0.965922316 0.91788473 0.966076356 0.986953591 0.961210015 0.93523449 0.928147315 0.928489126 0.868807645 0.868409328 0.885401087 0.846511771 0.936114509 0.961712357 296394858 badh Segniliparus rotundus DSM 44985 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 0.912168561 0.957148177 0.996291466 0.957551045 1.059450606 1.048506482 1.081678144 0.940330762 0.96675141 1.062233116 1.063173698 1.004740433 1.066449147 1.011090492 0.971794763 1.033620215 0.950138199 0.969288717 127511439 nrfa Shewanella loihica PV-4 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 1.423617077 1.356306182 1.385866896 1.400806383 1.355178152 1.413548591 1.350400531 1.376487816 1.363723539 1.362838366 1.373917604 1.375700065 1.349259284 1.350386194 1.348930228 1.375654658 1.400658625 1.364231159 325555524 amyA Rhodococcus equi ATCC 33707 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 1.268317296 1.25949078 1.266917974 1.291093197 1.256147282 1.272280188 1.264545463 1.284957514 1.254803028 1.245120543 1.264098224 1.281538853 1.269346699 1.211817592 1.250196963 1.233306671 1.267974248 1.209704045 422314227 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.9371959 0.92968933 0.942536869 0.888625866 0.881366685 0.947510664 0.886906366 0.875699763 0.86596331 0.992795774 0.845032382 0.867568411 0.952221337 0.966815567 0.856600462 0.903271534 0.905420554 0.9050258 308805693 terc Ostreococcus tauri Metal Homeostasis Tellurium Detoxification superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 0.828471698 0.814994643 0.80522679 0.829846731 0.784422693 0.798765286 0.835069276 0.862685472 0.825407252 0.827567531 118018608 terc Serratia proteamaculans 568 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 0.978560695 0.878342528 0.915512987 0.966984663 0.947558571 0.960683002 0.940188301 0.963774669 0.924858731 0.89517615 0.863048266 0.942802199 0.855666371 0.87616719 0.879191386 0.904295476 0.939650656 0.982144501 4249601 urec Actinomyces naeslundii Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces; 0.975225925 0.949692222 0.881833943 0.927392965 0.847833275 0.863146532 0.866351893 0.938463826 0.955720535 0.912984082 0.810689768 0.910938639 0.888780884 0.912797165 0.967251578 71089868 vdh Pseudomonas fluorescens Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.976617679 1.019645536 1.024133245 1.004067486 1.006046827 1.022235581 1.003123456 1.012712346 1.00073355 1.000062896 0.99604358 1.00429184 1.00324088 0.998518149 0.99658353 1.011647453 1.000817291 1.003929885 154159546 fccab Xanthobacter autotrophicus Py2 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.07148971 1.06847757 1.074871768 1.097653616 1.042139618 1.029121754 1.058444919 1.089247547 1.076790075 1.072037463 1.053656428 1.114438572 1.026137884 1.057100831 1.027696918 1.039828947 1.04013933 1.038371128 52347036 mannanase Bacillus licheniformis DSM 13 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 0.843832817 0.844033546 0.836308279 268638373 alkb Gordonia soli Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 1.202460591 1.183430278 1.17905305 1.200682523 1.19744156 1.206303737 1.165137832 1.160864894 1.179575457 1.128364371 1.181020455 1.173329026 1.146023 1.11662581 1.130466742 1.137472959 1.195924255 1.158487907 347820862 catechol Verminephrobacter aporrectodeae subsp. tuberculatae At4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter aporrectodeae; 0.952454932 0.94572977 0.877917549 0.930392043 0.888514117 0.923453598 0.922316838 0.909558279 0.955276009 0.964104836 0.913941564 0.915743474 0.887954939 0.922531797 0.891957925 0.872217756 0.938843521 0.94967183 302675657 bph Schizophyllum commune H4-8 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.054645836 1.022155432 1.033541267 1.010786463 1.029464448 1.007906128 0.908580434 0.963940408 1.01326858 0.972654779 1.010763577 0.958165697 0.95042499 0.932107453 0.901316806 0.922177187 1.031038532 1.004686312 3724170 bco Thauera aromatica Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 0.798358317 0.77507351 149810230 dmdA Roseobacter sp. AzwK-3b Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.029339137 1.040995214 1.050571796 1.026515795 1.019200269 1.009145297 1.002209448 1.014960562 1.023675188 1.004746329 1.009294759 1.029266488 0.998847175 0.998022064 1.003165709 1.035586299 1.045138523 1.049373938 150027803 TIM Sinorhizobium medicae WSM419 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.936671479 0.917875184 0.951567535 0.945572373 0.94848579 0.951167902 0.938754537 0.957337546 0.97696248 0.93416056 0.951514662 0.949552077 0.935760488 0.914057899 0.903910187 0.918903733 0.931860033 0.956471343 161160558 ppx Sorangium cellulosum 'So ce 56' Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.341051208 1.299870928 1.284883066 1.310064998 1.299767839 1.340935305 1.299395364 1.305883999 1.269778687 1.278475838 1.280618086 1.306885553 1.282985905 1.287713648 1.284023828 1.309698474 1.313102963 1.279897437 154695336 Glucose_oxidase_fungi Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 1.088357387 0.982253362 0.9271705 0.853432732 0.977671181 1.128196896 0.923350131 0.898992018 0.903165765 1.000021058 0.975421759 0.93632147 1.007116557 1.09262425 0.914809897 0.974089099 1.142524929 1.059029327 603078 endopolygalacturonase_fungi Sclerotinia sclerotiorum Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia; 0.86178515 0.839338786 0.86593251 0.903073764 0.829048453 0.809266127 0.822182386 0.852581617 0.825492114 0.837638495 0.821241315 0.880148974 0.833810943 164455506 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.236949496 1.219706473 1.220354684 1.246625356 1.210974714 1.203745488 1.159761254 1.18375074 1.232123706 1.225849774 1.208756905 1.246126317 1.198595834 1.188175319 1.150421891 1.194963733 1.22144798 1.192107172 302538125 mdlc Streptomyces sp. C Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.98142942 0.958234408 0.939900923 0.966704212 0.933750894 0.934408587 0.870816402 0.882119278 0.966145071 0.949738398 0.924364065 0.860149573 0.916438987 0.982733946 0.890900464 0.879970219 0.941807093 0.931301666 164455638 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.796332873 0.766101087 196482334 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.876097002 0.898444325 0.808361043 0.856938352 0.86334059 0.86417416 0.847066458 0.815825822 0.850035494 0.859563474 0.817566302 0.884779304 0.925225722 372274734 amyA Pantoea sp. SL1_M5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 1.189708716 1.191301032 1.14724751 1.196496643 1.152249152 1.184174483 1.129018299 1.167714228 1.129299868 1.14835833 1.131678789 1.145954055 1.115580781 1.12269102 1.151719076 1.144277983 1.179153208 1.145817283 383782417 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.105231682 1.124110322 1.091778729 1.133348933 1.102062191 1.091289289 1.085948588 1.103546797 1.098823758 1.125164186 1.069343923 1.118267331 1.054809603 1.101484401 1.06865389 1.063049077 1.091645344 1.116399771 164455670 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.953654846 0.843029277 0.862683845 0.859800563 0.856775486 0.844533867 0.859371693 0.849320544 0.860217991 0.829053229 0.783356985 0.81620807 0.873302633 270210916 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.960958106 0.956286829 0.972398445 1.026222953 0.986542452 0.956259832 0.984120028 1.010562169 1.018636475 0.938516867 0.945625068 0.953167987 0.916534073 0.939357021 0.913059473 0.92119191 0.974691119 0.971337916 374348990 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.873335967 0.896728935 0.867541898 0.896374662 0.823271109 0.879472451 0.827961792 0.880881362 0.874876199 0.86756902 0.84543276 0.908302909 0.899506759 149783143 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.052115638 1.036014566 1.06912401 1.0303165 1.042808634 1.062169508 1.031161337 1.009652135 1.044300092 1.042416769 0.994910229 1.032089849 1.018992841 0.992821063 0.965141638 0.983725996 1.031715066 1.047699783 210634926 acetylglucosaminidase Collinsella stercoris DSM 13279 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 0.834258927 0.823780059 0.796524853 0.814794415 0.817815207 0.848752881 373233016 RgaE Niabella soli DSM 19437 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 0.808829659 0.895060772 0.809009127 0.873239736 0.858062442 0.798117525 0.813649316 0.862413727 56710238 catechol uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.807838565 0.770841102 0.800567468 0.807606468 0.795694599 0.846177296 346058532 merb Pseudomonas aeruginosa NCMG1179 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.850222549 0.865927713 0.874629443 0.883841829 0.941210292 0.934529207 0.888184388 0.907138066 0.858355882 0.915239648 0.85758933 0.884371526 0.91219903 0.86335636 0.891149983 0.893594779 0.878149585 0.878894384 163758498 vdh Hoeflea phototrophica DFL-43 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.83861089 0.833204226 0.869128608 0.847177372 0.786830718 0.825317908 0.808129673 0.863795407 0.876908329 342316494 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.513327612 1.448952811 1.456024684 1.472462167 1.423581888 1.50262155 1.425344971 1.45581562 1.448213701 1.425576313 1.441541821 1.443271725 1.41625593 1.424864921 1.425690623 1.450958376 1.486085104 1.425541112 160917536 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.982039278 1.008584174 0.93604888 0.987905453 0.999070526 1.022596966 0.980890001 0.985124662 0.983169704 0.959724322 0.986695644 0.974262602 0.971763688 0.956842419 0.986790255 0.981432471 0.987160424 0.99344668 373101360 xylg Cupriavidus basilensis OR16 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 1.14256742 1.149560009 1.151004571 1.152423598 1.185629451 1.172754362 1.150033124 1.144387823 1.141059925 1.176669517 1.16185781 1.218513418 1.184522208 1.159024118 1.252292805 1.199839563 1.162721419 1.164687375 84494737 amyA Janibacter sp. HTCC2649 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 0.800752575 0.824965433 0.868310272 0.817198465 0.852062237 0.816744023 0.797892576 0.900366406 0.840725377 0.918756864 357200839 cda Paenibacillus terrae HPL-003 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 0.88745163 0.818959358 0.854248075 0.798117701 0.846515149 0.85235903 0.823377037 0.826428226 0.836292555 0.853163639 0.906316816 0.832771609 0.805449081 0.816852372 0.807264085 0.8140977 0.855901645 148657308 pcs Roseiflexus sp. RS-1 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 0.969140718 0.931128468 0.958409075 0.93458526 0.967350831 0.944043795 0.953604655 0.956333287 0.971135079 0.972873817 0.941656684 0.930443009 0.922173795 0.885588203 0.887295628 0.918851338 0.963813011 0.991122932 310791430 cutinase Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 1.047021128 0.992420397 1.089453266 1.115051921 1.064590067 1.123005512 1.171632802 1.094719307 1.054441511 1.095757201 1.128908349 1.10098556 1.053824462 1.042491858 1.036923076 1.049920668 1.079093804 1.065497377 363423130 amyA Rhodococcus pyridinivorans AK37 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.812166842 0.810523649 0.854152866 0.842352846 0.801162915 0.832283452 0.816615838 168199246 nhh Methylobacterium sp. 4-46 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.33701032 1.358670677 1.287236987 1.290552084 1.289269188 1.331792412 1.284777971 1.291110743 1.289433334 1.285869127 1.278654889 1.272024344 1.270601172 1.27564616 1.246030236 1.273171541 1.311260081 1.306256919 256387104 adpb Arthrobacter sp. scl-2 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.973092086 0.941596912 0.995322405 1.006449822 0.926356495 0.963081461 0.918785153 0.982128245 0.984484578 0.960031325 0.940408287 0.994248671 0.943033645 0.923542792 0.89942363 0.957911453 1.002220182 0.96769625 147886218 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.809324553 0.793007209 117928665 exochitinase Acidothermus cellulolyticus 11B Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 1.238288984 1.224315764 1.201833086 1.191327068 1.160890668 1.189296888 1.158508689 1.19704048 1.205463547 1.189450813 1.19841988 1.213677072 1.137148932 1.152822874 1.123250532 1.163825839 1.205880348 1.200746468 119395258 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.933339463 0.902657295 1.058269077 0.984624613 0.919986357 0.927439549 0.952554043 0.915578692 0.973581614 0.971738223 0.989861163 0.988218765 0.927010896 0.931863284 0.91094259 0.919917392 0.990801759 0.956934346 161380507 tktA Oceanibulbus indolifex HEL-45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.868918284 0.940731755 0.905282824 0.966254317 0.911109467 0.972228482 0.889215815 0.949541277 0.884944873 0.917372793 0.925576712 0.939517419 0.890410751 0.898142238 0.878800915 0.877123256 0.938468853 0.937210511 344039014 acetylglucosaminidase Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 1.595113723 1.540003212 1.536072849 1.565340847 1.513493935 1.59152672 1.517412277 1.530367097 1.53578276 1.504489998 1.513830574 1.524306103 1.505507258 1.495082719 1.495545578 1.515339044 1.577237946 1.514348722 239506387 amyA Kosmotoga olearia TBF 19.5.1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 0.770000572 0.834443517 21673682 dsra Chlorobium tepidum TLS Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 0.80198541 0.826605058 0.777097257 0.807257378 0.829395806 408780487 linb Mycobacterium kansasii ATCC 12478 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 0.87952544 0.857489227 0.823553239 0.889782723 0.821159959 0.832965949 0.855758822 0.801534898 0.83934692 0.816719359 0.835496468 0.906820217 0.854311477 77814270 arsc Shewanella putrefaciens CN-32 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 1.067880826 1.064709994 0.973538381 0.989686037 0.931532552 1.012203019 0.960906308 1.0339986 1.014400811 0.990148673 0.9993214 0.975606925 0.976048611 1.020501444 0.934752349 0.95700419 1.020321408 1.032383137 220906104 arsc Cyanothece sp. PCC 7425 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.852354067 0.846068109 62906756 dsra uncultured prokaryote Sulfur sulfite reduction NA 0.848388142 0.842505681 0.84326532 0.916246626 0.865976233 0.829622336 0.868969186 0.849460541 0.888119948 0.862425631 0.8195697 0.911131795 0.883790265 0.85078171 390411676 amyA Terriglobus roseus DSM 18391 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 0.804586679 0.792841792 0.801230639 0.798630979 288942021 terc Allochromatium vinosum DSM 180 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 0.910977543 0.902558217 0.853106259 0.912905316 0.802846432 0.882229093 0.866363883 0.936440302 0.979146765 0.852342695 0.841401638 0.834210932 0.809984357 0.826128745 0.85462991 359782323 tktA Pseudomonas psychrotolerans L19 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 1.083981931 1.087442495 1.042657619 1.078906115 1.059613268 1.077325627 0.982626713 1.019248029 1.052543215 1.050194525 1.043564996 1.045960401 1.009281363 1.051743384 1.021258579 1.015979377 1.089812026 1.035030621 254442885 mannanase Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.848348077 0.923631761 0.892519741 0.922319615 0.882421736 0.874977895 0.84182441 0.853825557 0.902766346 0.886346482 0.858250211 0.877741856 0.891035381 0.849732832 0.812627997 0.827399415 0.894418939 0.917552664 154362234 fthfs uncultured microorganism Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway 0.874351558 0.858579552 0.917489953 0.95173373 0.906933278 0.900044552 0.882815696 0.879382859 0.933856381 0.929246132 0.919831235 0.898136966 0.859625109 0.868622362 0.827447648 0.838020071 0.945034629 0.914569881 221726276 terc Agrobacterium radiobacter K84 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.093556068 1.130009686 1.089396958 1.107714048 1.124849933 1.174482743 1.108960128 1.098708514 1.078435019 1.150006725 1.137328733 1.113540541 1.12745347 1.144890395 1.069712297 1.117190513 1.125789998 1.125188994 377562406 cysJ Gordonia otitidis NBRC 100426 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 1.072873712 1.080501305 1.065092293 1.074759606 1.061264191 1.109749087 1.053993184 1.066221188 1.098349767 1.098018025 1.085825626 1.111260398 1.052158726 1.041527472 1.018089082 1.074605457 1.083183005 1.055329865 46115128 pme_Cdeg Gibberella zeae PH-1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 0.808898568 0.849078103 0.809249184 0.855703456 0.828600769 0.782607571 407198260 aln Celeribacter baekdonensis B30 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 0.900627732 0.897144966 0.914666764 0.973674713 0.953111824 0.93749531 0.893059882 0.967633997 0.945032552 0.930807609 0.92352876 0.92796088 0.883475731 0.925935408 0.914945664 0.949483851 357393893 endoglucanase Kitasatospora setae KM-6054 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 0.958019677 0.983318918 0.98108481 0.992180917 1.003046223 0.980193038 0.99594619 0.983133452 0.955634262 0.959322355 0.981931664 0.913660151 0.874253552 0.887522964 0.870118952 0.834375583 0.954339085 1.022532046 52549158 mcra uncultured archaeon GZfos26B2 Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.833031388 0.852603309 0.81097434 0.86853095 0.796967764 0.812293286 0.837424642 0.821450362 0.844136062 0.823343523 0.846835828 0.855788653 37521000 amyA Gloeobacter violaceus PCC 7421 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 0.958486973 1.009848172 0.92601866 0.951714043 0.994652555 0.998029313 0.952988174 0.903896204 0.959939196 1.003885991 0.955420325 0.991030188 0.992041578 0.99857701 0.95557021 1.014005951 0.927447165 1.012519492 163744445 GAPDH_Calvin Oceanibulbus indolifex HEL-45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 1.02304535 0.990690977 1.004670476 0.994737897 1.017964819 1.000785909 1.072193448 1.020249165 1.041041307 1.035597762 0.980285808 1.039776327 0.978046387 1.031746752 0.929993291 1.004230639 0.961137815 0.982562133 78102419 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.115859184 1.148939075 1.101665093 1.084448929 1.106873823 1.112101675 1.093245728 1.081272414 1.077881646 1.099471352 1.126938017 1.106935813 1.105216346 1.079099654 1.052958716 1.080549438 1.13993548 1.078815034 326949267 tfdb Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.954229405 0.987181843 0.965109003 0.9685664 1.000294734 0.969289939 0.967689386 0.949113341 0.951169409 0.995478714 0.978220633 0.968604503 0.989408515 0.978920115 0.964180321 0.974816931 0.961864842 269928479 linb Sphaerobacter thermophilus DSM 20745 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 1.214379251 1.233035673 1.197236064 1.156455308 1.194072873 1.254074637 1.178620851 1.17396204 1.191384536 1.226496529 1.186520059 1.194033301 1.155753409 1.183060386 1.12833198 1.209083721 1.20474331 1.224509998 77463896 norb Rhodobacter sphaeroides 2.4.1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.424585889 1.377996007 1.391914057 1.396004299 1.385453944 1.432936747 1.384516776 1.393877904 1.371830325 1.367669964 1.392822754 1.388254364 1.379586266 1.342945904 1.360180226 1.366640884 1.419401824 1.36190074 288912935 pcpe Azospirillum sp. B510 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.358194582 1.325561981 1.325792193 1.336453437 1.340230733 1.356987 1.312516117 1.317593106 1.317347234 1.312258552 1.324938567 1.33290681 1.321017392 1.275499653 1.315142556 1.314256309 1.363524715 1.304470637 123967446 xylj Sphingobium yanoikuyae Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 0.923011522 0.880970343 0.90680716 0.921481192 0.922413095 0.911272725 0.935481783 0.920735328 0.916773534 0.933632247 0.927087561 0.922081812 0.902731588 0.886395907 0.888704253 0.907582574 0.904885226 0.949657108 325672899 urec Rhodococcus equi ATCC 33707 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 1.418507484 1.377459412 1.385961443 1.40014983 1.391873673 1.424223266 1.368111531 1.376282069 1.383877422 1.348329777 1.368198473 1.38981846 1.368206331 1.33427329 1.362657916 1.359241538 1.411688729 1.364794558 345002754 RgaE Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.771862171 0.799965985 115371850 ppx Stigmatella aurantiaca DW4/3-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.979705812 0.958530376 0.968487815 1.005441129 0.909593455 1.027682426 0.965928268 0.980820007 0.99308965 0.966182937 0.921197675 0.983628227 0.903085948 0.901188067 0.862551704 0.856654276 0.995013421 0.997979212 94555060 amyA Deinococcus geothermalis DSM 11300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 0.885954376 0.88759006 0.860086645 0.918309571 0.90476437 0.897327092 0.882819687 0.889426988 0.883919827 0.900868212 0.889324363 0.872687552 0.861412889 0.79142431 0.806368128 0.917946738 324316626 arsc Deinococcus proteolyticus MRP Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 0.78654487 0.800276873 0.769696736 0.803723002 0.807060565 0.793552784 375140302 mult_ring_12DiOx Mycobacterium rhodesiae NBB3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.103616223 1.028555774 0.835035914 0.935686822 0.956114567 0.922725162 0.911817788 1.039934065 0.985240888 0.997009387 0.901283498 0.98065126 0.984153399 0.896767477 0.99298081 0.979743721 334365082 amyA Alistipes sp. HGB5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 1.164445311 1.065391944 1.187826394 1.132594682 1.159908556 1.115065143 1.130518617 1.103569921 1.13088047 1.087896055 1.090576549 1.157563391 1.108517367 1.073589968 1.118052572 1.097385866 1.080657991 119376796 poba Paracoccus denitrificans PD1222 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.947951707 0.920489828 0.946700877 0.963068491 0.921432535 0.927887912 0.910603641 0.914324376 0.930050843 0.952117597 0.940676924 0.92732299 0.900032277 0.911784875 0.886182301 0.890915049 0.94602558 0.952942443 87281077 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.980083589 0.995314956 0.903053736 0.939269395 0.96471201 0.962816694 1.001500912 0.866111232 0.964045733 1.032078809 1.037961412 1.009332487 0.983729349 0.989605922 0.921907898 0.953762538 0.927943415 1.011251158 408781630 alkk Mycobacterium kansasii ATCC 12478 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 1.252190545 1.283720011 1.227329205 1.219403473 1.221697448 1.244458226 1.208997838 1.200262645 1.22308562 1.220240457 1.205796187 1.209230825 1.200020198 1.155079189 1.137728021 1.177730802 1.249370523 1.218855211 343460141 por_DiC4HB Pyrolobus fumarii 1A Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Pyrolobus;species:Pyrolobus fumarii; 0.896411813 0.985967626 0.917789384 0.861445697 0.904870328 0.898784964 0.889542186 0.855846949 0.914109284 0.912074001 0.947646636 0.849028912 0.842916963 0.907536204 0.856918466 0.832179492 0.891496323 0.96291288 206677616 vana Rhodobacterales bacterium HTCC2083 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.821185612 0.826571708 0.896752221 0.954900748 0.851481062 0.916292249 0.864747905 0.907278714 0.899905705 0.821256464 0.882626188 0.887564217 0.893949399 0.918269597 0.847625041 0.872873152 0.843319999 311230829 vdh Frankia sp. EuI1c Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.130508735 1.096378067 1.114424449 1.202422647 1.136032044 1.153441082 1.152423273 1.161183403 1.139700944 1.155984519 1.116150765 1.148526881 1.110218558 1.114396241 1.093337023 1.115357127 1.149946015 1.104220749 7801167 dextranase_fungi Penicillium funiculosum Carbon Cycling Carbon degradation sucrose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 0.904500789 0.867429837 0.885383227 0.845355655 0.829761913 0.800475893 0.800563728 0.897787959 0.803309852 0.90414786 0.85083854 257077346 mer Ferroplasma acidarmanus fer1 Metal Homeostasis Mercury Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Ferroplasmaceae;genus:Ferroplasma;species:Ferroplasma acidarmanus; 0.957373676 0.906733655 0.880977683 0.916764956 0.919683672 0.89839196 0.928894743 0.968890453 0.93815404 0.886243404 0.863493898 0.948294135 0.872996962 0.843522141 0.920024721 0.915118152 0.888131804 0.903145723 353212035 GAPDH_Calvin Hyphomicrobium denitrificans 1NES1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.795384186 0.838829974 0.785804622 0.831353861 114324585 cellobiase Chaetomium thermophilum Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 1.08845231 1.107369484 1.079924643 1.103411211 1.038951953 1.132238483 1.046576427 1.076653135 1.068927823 1.129271022 1.082484879 1.045873506 1.027639531 1.046169987 1.009452912 1.059651935 1.105442464 1.106518328 105893048 catechol Burkholderia cenocepacia AU 1054 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 1.085077066 1.180208326 1.086556045 1.096163207 1.11155914 1.131086481 1.091696803 1.085790406 1.107442641 1.10251294 1.109899529 1.125432581 1.117379415 1.093618572 1.071708475 1.095740644 1.084338789 1.137399788 163783644 nosz Hydrogenivirga sp. 128-5-R1-1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 0.935225432 0.898561055 1.021014572 0.962915858 0.943930192 0.950084524 0.919434498 0.972164781 0.911356031 1.000264185 0.941662556 0.990119353 0.95643048 0.933823781 1.030331984 0.929644057 0.965502584 0.930769135 355378609 terc Selenomonas noxia F0398 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 1.106304007 1.072867177 1.060083344 1.047908809 1.06684891 1.062471246 1.04629277 1.048678534 1.047774224 1.042040618 1.060827558 1.066659734 1.03649525 1.014926339 0.9819994 0.995056504 1.089157839 1.071495241 255010727 acetylglucosaminidase Bacteroides fragilis 3_1_12 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 0.887575276 0.875431996 0.846994503 0.878611569 0.877237094 0.876313844 0.861890041 0.830641697 0.898738508 0.891616905 0.896730366 0.874735237 0.870550293 0.923462272 0.860656722 0.842501931 0.848733706 0.882444232 225024827 terc Eikenella corrodens ATCC 23834 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella;species:Eikenella corrodens; 1.109391318 1.098519708 1.117678205 1.128377521 1.087267159 1.136944003 1.08521375 1.116485147 1.106408573 1.09986816 1.09850069 1.1363531 1.086761902 1.103666544 1.06102138 1.113596048 1.094639659 1.106074279 306985625 glucoamylase Cyanothece sp. PCC 7822 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.800503976 0.873012541 0.829057268 0.933731034 0.793368696 0.800160925 0.864854954 0.798631604 0.825674513 0.809174251 0.868350098 316943133 phn Desulfovibrio aespoeensis Aspo-2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 0.953054292 0.990482407 0.930701736 0.950569483 0.937899114 0.966410254 0.941846667 0.970446294 0.918069437 0.986781523 0.921483059 0.974859458 0.87036854 0.8700485 0.830436114 0.959509789 0.963599171 1.022153504 91201988 amyA Candidatus Kuenenia stuttgartiensis Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Kuenenia; 0.858989738 0.847125222 0.83638383 0.898623157 0.81616564 0.792429478 0.870453877 0.862454065 0.866826188 0.788807802 0.814836585 0.812700681 0.795791796 0.868112897 0.832783778 118172380 cutinase Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.182539682 1.179450018 1.180939353 1.203285531 1.205236835 1.220256452 1.191477172 1.188803941 1.212880319 1.215803032 1.196850749 1.205550258 1.168093516 1.16282166 1.13305632 1.162833007 1.191239992 1.168056955 302541001 RgaE Streptomyces hygroscopicus ATCC 53653 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.136171749 1.06808718 1.076876223 1.097710622 1.082704299 1.092393485 1.065857411 1.026160893 1.091217834 1.045482188 1.043377762 1.072770182 1.036429952 1.008511228 0.956936886 1.088674252 1.117067223 1.067275712 282948453 chitinase Citrobacter rodentium ICC168 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 0.817319044 0.841641246 0.819551191 0.813189166 0.869349524 0.859285911 0.864668611 0.806103995 0.816921304 0.843700342 0.826278565 0.843694388 111224696 narb Frankia alni ACN14a Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 0.944738087 0.999047561 0.969102501 0.995373394 0.986524171 0.982907245 0.970846575 0.97522808 0.992122112 1.003205047 0.984321149 1.027556532 1.005566432 1.002659868 0.94977742 0.960904897 1.015183937 0.933199164 149376271 pcag Marinobacter algicola DG893 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 0.913795916 0.88808955 0.923878374 0.90914041 0.898162445 0.929713085 0.901085733 0.897985123 0.912718785 0.900025708 0.860336441 0.905196801 0.848616512 0.881388953 0.803627569 0.936667989 0.94271274 162568581 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.782406899 0.812171139 3982838 endopolygalacturonase_fungi Penicillium griseoroseum Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 1.245657491 1.220810617 1.221103664 1.248029873 1.180009195 1.276206338 1.18740793 1.231056435 1.222629636 1.211469306 1.201685729 1.207964622 1.16660696 1.226100899 1.210072738 1.218165605 1.248141031 1.232421597 91682484 rubisco Rhodopseudomonas palustris BisB5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.062990048 1.095368429 1.125704188 1.121398075 1.111371815 1.102537933 1.057682304 1.112324583 1.126299214 1.124626981 1.064732713 1.115474515 1.111238325 1.117051717 1.116794625 1.100051582 1.072447007 1.077619714 421953106 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.039972888 1.007387132 1.007681917 1.018141486 1.018637321 0.996430742 1.035641312 1.013353569 1.035036773 1.031960728 0.955686927 1.005213355 0.980013852 0.958490485 0.93131138 0.943380574 1.028542558 1.04186632 375310878 mannanase Paenibacillus sp. Aloe-11 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.925128802 0.918564579 0.900330888 0.964515914 0.888816712 0.930597543 0.908515177 0.898052568 0.947236299 0.922248951 0.902023627 0.921620851 0.87718849 0.900125408 0.864759629 0.876253821 0.960638715 0.934689778 377578676 cueo Escherichia hermannii NBRC 105704 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 0.78954359 0.802869207 0.973238312 0.839596959 403120727 xylj Alicyclobacillus hesperidum URH17-3-68 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus hesperidum; 0.911430206 0.913178519 0.844105153 0.926319658 0.881101288 0.918375635 0.864161819 0.836467905 0.917700016 0.898573383 0.882082165 0.847597945 0.840075384 0.852444254 0.886503788 0.928293625 0.892829765 238023374 mer Burkholderia glumae BGR1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 1.278236596 1.270564364 1.261918626 1.293977468 1.279482137 1.308585578 1.270223987 1.274269508 1.264757845 1.259079386 1.258064253 1.28962608 1.282616323 1.242714531 1.255356875 1.28068939 1.296083792 1.250024817 283949552 nitrilase Conexibacter woesei DSM 14684 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 0.79791573 0.866871542 0.858240563 0.794297686 0.818984961 0.882582213 163777270 mer Monosiga brevicollis MX1 Metal Homeostasis Mercury Detoxification superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 1.071723926 1.051141498 1.055610302 1.093512141 1.024588089 1.087243482 1.033499997 1.051942051 1.073386948 1.060438422 1.032785109 1.020998576 0.991263363 1.04053848 0.963062344 1.042546736 1.068613377 1.061641908 14023848 ara Mesorhizobium loti MAFF303099 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 1.090849921 1.064587836 1.116008195 1.055062404 1.066351604 1.0474851 1.064002505 1.030754733 1.051587158 1.103768892 1.082302194 1.06340061 1.037512492 1.033462283 1.010474842 1.028847826 1.048857543 1.075279233 76058152 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.305476163 1.306301533 1.285746105 1.292952308 1.243994633 1.319796994 1.300032508 1.289627616 1.277371787 1.268595148 1.265180812 1.302122322 1.220244388 1.234964501 1.211423119 1.23963827 1.274401742 1.284317474 365901003 exaa(moxf) Bradyrhizobium sp. STM 3843 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.837304377 0.797123969 0.883614824 0.822672116 0.878365014 0.840063193 0.823180219 0.844562512 0.861130117 0.826238578 154245482 tktA Xanthobacter autotrophicus Py2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.126589431 1.11031664 1.05769682 1.128580532 1.031062258 1.134989656 1.071317988 1.088833436 1.081819082 1.103566432 1.077537583 1.093864015 1.025586122 1.045340029 1.001170548 1.070361524 1.124004887 1.136260097 402499707 ben_bcla Rhodovulum sp. PH10 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 0.852434072 0.872031842 0.8951642 0.892962331 0.867546484 0.921416024 0.802890742 0.844409578 0.812392272 0.855425306 0.900783339 0.827243025 325681126 bphF1 Ruminococcus albus 8 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 0.852477046 0.881189894 0.830977369 0.900034189 0.788586905 0.839930575 0.82225035 0.854988591 0.808458338 0.828004026 0.859050146 0.845929344 0.853917902 62512311 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.86470495 0.843708924 0.884135957 0.901247528 0.895876092 0.88384377 0.879044228 0.92136479 0.901385039 0.841744464 0.889084793 0.838612796 0.839671623 0.81096166 0.833522145 0.850892134 0.895339242 295414358 PRI Roseovarius nubinhibens ISM Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 1.05195943 1.089786957 0.999272769 1.01825193 1.011378611 1.018746753 0.976377321 1.008927277 0.996156165 1.030751077 0.9982427 1.049919371 0.988467136 1.016467191 0.991011756 1.000754903 1.030102699 1.062170824 317465865 arsc Pseudoxanthomonas suwonensis 11-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 0.770544253 0.794714327 323365070 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.998236671 0.925612851 0.950042986 0.994284877 0.976196126 0.94661258 0.962470105 0.93832331 0.958979706 0.949715572 0.950769019 0.989211915 0.95174955 0.889410023 0.894441767 0.934019982 1.022402664 0.942821774 374846730 cutinase Nocardia cyriacigeorgica GUH-2 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 0.992639218 0.963883478 1.011267147 1.032278088 1.021757335 0.975064155 1.016910821 1.008765781 1.038260721 0.977878154 0.994363002 1.070382508 0.935203614 0.933710042 0.912829009 0.931545118 1.023631898 0.984390244 145322396 pchcf Novosphingobium aromaticivorans DSM 12444 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 0.980633982 1.009964356 1.019529444 0.979626008 0.982091483 1.014275337 0.97757604 0.955860185 0.978737561 0.979345521 0.9740769 0.984807795 0.981508143 0.948899568 0.915532885 0.957207147 0.991104274 1.004574513 118474039 pcpe Mycobacterium smegmatis str. MC2 155 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.843653902 0.810833085 0.8127433 0.809039735 0.752106107 0.822507593 61220985 tfth Arthrobacter sp. PNP1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.313973091 1.257200115 1.233385731 1.287544893 1.262857023 1.315214329 1.252140873 1.31273358 1.30289914 1.264790908 1.200812919 1.262006674 1.296866533 1.220842317 1.304107071 1.280590423 1.329997806 1.278042157 333930686 trze Serratia plymuthica AS9 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 1.127350388 1.097655587 1.130768784 1.154466732 1.112805779 1.113810847 1.087929589 1.135217748 1.116270076 1.115721101 1.107539814 1.110655231 1.10068634 1.087818773 1.055344514 1.090412313 1.142034311 1.100358535 162568569 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.136284036 1.106449098 1.089403226 1.101934031 1.101869656 1.191481914 1.129238772 1.088505713 1.081573308 1.161712778 1.12231072 1.143634287 1.108424892 1.116192858 1.063581708 1.109523902 1.068710433 1.10002665 355532531 ara Paraprevotella clara YIT 11840 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 1.264466717 1.259881985 1.208546467 1.266023758 1.216511929 1.26241587 1.19895389 1.242379332 1.229508475 1.226953247 1.218534791 1.233307264 1.191763829 1.182084572 1.205755096 1.20182652 1.254092999 1.227412338 32447867 ppx Rhodopirellula baltica SH 1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 0.80027838 0.770494104 169832337 dsrB Candidatus Desulforudis audaxviator MP104C Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 1.073666297 1.052105424 1.056601269 1.046185182 1.030487963 379988835 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.236491862 1.226386743 1.209041403 1.171764966 1.178639092 1.247287987 1.163205226 1.213817102 1.173759062 1.223663328 1.204688596 1.204813296 1.132242562 1.186010754 1.137935594 1.159823212 1.200800427 1.242192502 307742767 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.033801125 1.029867274 0.99151086 1.049609978 0.993758316 1.016799702 0.984435254 0.989058035 1.018157202 1.004571064 0.987449032 1.004433205 0.970940832 1.011714946 0.961053534 0.970200237 1.033356437 1.020226789 221738036 nasa Agrobacterium vitis S4 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.901782774 0.849993206 0.875550333 0.862536722 0.839501985 0.887525672 0.872689243 0.838456957 0.887186716 0.875815689 0.890586805 0.872776509 0.8465841 0.818025882 0.851636507 0.86112537 0.868415863 0.875614035 198253525 dehh109 Octadecabacter antarcticus 307 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 0.846718001 0.868017868 0.881963281 0.838770193 0.822679902 0.845735576 0.807152772 0.882498134 0.855603098 299766338 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.932656423 0.925997784 0.870098346 0.882784309 0.886438274 0.892453538 0.920592594 0.932047015 0.870531925 0.954453264 0.840959751 302442235 mdlc Streptomyces sp. C Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.101979405 1.141208909 1.092659396 1.08690148 1.084138602 1.105735458 1.080281523 1.072318029 1.098657569 1.068954933 1.085202016 1.088575442 1.073669508 1.055230433 1.059246382 1.05131937 1.14088826 1.074437481 304398374 ppx Pantoea sp. aB Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.856871921 0.808994629 0.834057222 154150648 rubisco Candidatus Methanoregula boonei 6A8 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanoregula;species:Methanoregula boonei; 1.087881264 1.102804541 1.089384177 1.095543656 1.111621972 1.104956678 1.125175318 1.081613984 1.095288247 1.116511442 1.094342878 1.094177118 1.074501603 1.114095343 1.091347959 1.077290421 1.086985812 1.107003682 313884657 amyA Eremococcus coleocola ACS-139-V-Col8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Eremococcus;species:Eremococcus coleocola; 0.954654487 0.906867405 0.940925827 0.910519466 0.926710626 0.941375531 0.899550333 0.927776734 0.955228485 0.908636587 0.912894945 0.897067456 0.828174416 0.879177366 0.830407307 0.852310923 0.927074758 0.932807835 284447539 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.87764616 0.87114338 0.874718618 0.883315447 0.892152636 0.827543762 0.882874996 0.854702032 0.880020168 0.838972957 0.874289035 0.838481028 0.796925454 0.825371715 0.941683855 0.815747432 0.842392423 0.856569157 46915642 chitinase Photobacterium profundum SS9 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 0.921961335 0.874915803 0.911781028 0.946084889 0.94208695 0.886939492 0.954556332 0.964267438 0.904322612 0.900619208 0.921036863 0.930879287 0.913125848 0.862758893 0.961049 0.907312185 0.852215767 0.876326617 157401497 nifh Methanococcus maripaludis C6 Nitrogen Nitrogen fixation NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 0.891111237 0.825183994 0.827831998 0.818304566 0.843104112 0.869498159 0.821400461 0.842716901 0.860107993 327177912 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria; 1.157775338 1.171448236 1.104757114 1.135118841 1.091625224 1.121556876 1.080405466 1.137334528 1.109929866 1.117640327 1.090955194 1.106555692 1.049313959 1.093740456 1.031323489 1.044605591 1.139481562 1.126437765 225791589 chitinase Acidobacterium capsulatum ATCC 51196 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 1.024871754 0.962485212 0.998253825 1.028794275 1.011024888 1.001234412 1.021216907 1.03045748 1.006496362 0.957874955 1.009290391 0.992611356 0.962323989 0.955214767 0.926445424 0.920117616 0.997408362 1.005912394 193087034 frdA_rTCA Chlorobaculum parvum NCIB 8327 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 0.90514161 0.940738842 0.888252172 0.896715883 0.881452008 0.915401603 0.857503267 0.906378674 0.890904875 0.912835223 0.891921046 0.878034876 0.851810597 0.878468235 0.824543149 0.842706969 0.904402466 0.939006717 146283804 amyA Pseudomonas stutzeri A1501 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.374730989 1.352172682 1.377564706 1.374810092 1.33465838 1.350612827 1.323204148 1.353144526 1.341434947 1.337715456 1.346534521 1.361657609 1.308804492 1.314642332 1.32503755 1.368643931 1.347057282 1.334261947 153962706 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 0.900596874 0.906188316 0.831439501 0.889736974 0.85755122 0.942791352 0.868569157 0.861621965 0.873665516 0.940021235 0.871052345 0.886274559 0.905230077 0.926337464 0.905280752 0.875657701 0.943736123 0.949516536 322511794 dsra delta proteobacterium SCGC AAA240-C23 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 1.119460106 1.136998599 1.186580245 1.097891483 1.119455246 1.170350342 1.05379769 1.076148829 1.099717429 1.107372944 1.122283831 1.100829426 1.092132514 1.120214969 1.089935411 1.085159707 1.107074563 1.141772055 171910108 glucoamylase Verrucomicrobium spinosum DSM 4136 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 1.088448621 1.108859809 1.109295271 1.121847892 1.088224809 1.11457786 1.123082788 1.064315592 1.070923086 1.140586431 1.128974186 1.11810702 1.076269059 1.07332839 1.056401795 1.072422729 1.166282945 1.134533795 167668110 ccmL Anaerotruncus colihominis DSM 17241 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 0.946895055 1.000199436 0.979290028 0.981435479 1.004282797 1.018425208 1.007442519 1.005754153 0.955274092 0.98812466 0.958484338 1.027071259 0.955992435 0.962114659 0.896374664 0.935182925 0.971761665 1.015497373 21467261 badh Rhizobium etli Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.906826672 0.893701761 0.911903972 0.914249199 0.91323786 0.900701575 0.908090568 0.936157701 0.91219685 0.90762408 0.882181421 0.896219551 0.818201611 0.846987135 0.826731319 0.898470356 0.864909788 91799927 PRI Nitrobacter hamburgensis X14 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 0.810861608 0.87824545 0.806933957 0.806438913 0.815911687 0.815426508 317117894 catb Alicycliphilus denitrificans BC Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 1.07885152 1.079658291 1.057296554 1.07719594 1.065954161 1.081870034 1.063616898 1.046262243 1.070493713 1.072491805 1.054188656 1.06858278 1.027202299 1.025868623 0.966730968 1.026770843 1.090046342 1.098026804 402833331 bphF1 Selenomonas sp. CM52 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas; 0.808712005 0.783796297 151302179 APS_AprB Desulfocaldus sp. Hobo Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;genus:Desulfocaldus; 1.016521061 1.027401956 0.992884106 1.026189519 0.982064965 1.01784941 0.933172274 0.965189778 0.978915433 1.040661171 0.991758404 0.994923817 0.971115872 0.954511422 0.9052319 0.960737393 1.030233314 1.038429611 255010023 acetylglucosaminidase Bacteroides fragilis 3_1_12 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 1.148569942 1.066794915 1.124446033 1.122007565 1.101904071 1.11267587 1.128686684 1.150820277 1.099336511 1.098105438 1.12314128 1.121845519 1.057335029 1.030620912 1.071790098 1.088748869 1.143232526 1.102007649 295900224 amyA Mycobacterium parascrofulaceum ATCC BAA-614 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.276366835 1.273413176 1.278550028 1.241832936 1.21956238 1.279883432 1.228685304 1.244621361 1.243784449 1.261621846 1.24776184 1.239393294 1.199101172 1.214676474 1.194059122 1.228386736 1.251733167 1.257030843 357053283 amyA Clostridium clostridioforme 2_1_49FAA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 0.912257208 0.899615793 0.840531157 0.797630124 0.836617353 0.841676978 0.841813697 0.84109025 15075594 tktA Sinorhizobium meliloti 1021 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 0.795625346 0.802011535 0.768971381 0.872189986 390412458 acetylglucosaminidase Terriglobus roseus DSM 18391 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 0.958810018 0.965347471 0.96689876 0.970662638 0.918120655 0.962565982 0.929305399 0.978755691 0.954747506 0.949979282 0.901650985 0.975167159 0.901558109 0.918493011 0.888673897 0.941149759 0.986338361 0.976738254 371718776 amyA Caldithrix abyssi DSM 13497 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 0.984032668 1.005938927 0.925600678 0.962247574 0.972194117 0.95574023 0.971043088 1.018409923 1.015807725 0.940594932 0.878324597 0.993243216 0.942199874 0.972865508 0.864768075 0.938487722 0.936452439 1.006888086 6693827 inulinase Pseudomonas mucidolens Carbon Cycling Carbon degradation Inulin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.28943201 1.263694447 1.282718124 1.29246061 1.275565521 1.269197371 1.270912031 1.312631545 1.277117731 1.262469547 1.277005409 1.292203978 1.27282229 1.218615621 1.249733629 1.258527065 1.281265901 1.226519505 209401960 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.23376046 1.186506422 1.212822847 1.187248102 1.212847761 1.235132768 1.223394579 1.216175639 1.199231588 1.183424669 1.208929374 1.195271917 1.203041645 1.152860918 1.186055797 1.157629235 1.232252377 1.184843136 302444915 pcpb Streptomyces sp. C Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.101495637 1.116341797 1.060764857 1.075488094 1.074938281 1.129633949 1.080102708 1.052689952 1.070658496 1.117167243 1.088840312 1.07121936 1.033854501 1.137093095 1.022074209 1.083498616 1.091503471 1.132611955 256585811 bend Saccharomonospora viridis DSM 43017 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 1.103503597 1.066393376 1.058324879 1.119857041 1.062121893 1.088997625 1.090890407 1.06840882 1.091840673 1.072403798 1.059851473 1.078146664 1.021142484 1.048402466 1.030864288 1.048176123 1.101775938 1.079194913 197286551 CsoS1_CcmK Proteus mirabilis HI4320 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 0.798725681 0.870239436 0.826397482 0.848147179 0.980322352 0.854657332 0.841977651 0.829149475 0.849950681 0.822378049 0.824746951 333028767 acetylglucosaminidase Streptomyces sp. Tu6071 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.063598998 1.035984208 1.068702236 1.032921938 1.021567752 1.124082158 1.000444706 1.025706305 1.047304329 1.028224098 1.050554007 1.040793236 1.007370616 1.032747731 1.068108412 1.031783372 1.047015895 1.079230001 302688121 Glucose_oxidase_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.891631936 0.929128265 0.911772997 0.932095288 0.937504172 0.934178638 0.879317025 0.900752424 0.912740728 0.920622932 0.905025716 0.937208105 0.901243653 0.918652226 0.891399294 0.932592243 0.920505163 0.945334723 302470916 amyA Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 1.081723273 1.064191371 1.065456399 1.064306286 1.077744184 1.109611979 1.069434397 1.069789443 1.038043162 1.068837711 1.073673919 1.046691431 1.060034102 1.058416879 1.035932044 1.045241008 1.067173231 1.071492037 126730580 badh Sagittula stellata E-37 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.856140114 0.857038863 0.894693452 0.8217717 0.841249448 0.927226403 0.87154846 0.834860576 0.846990367 0.899522453 0.842694073 0.870393221 0.843917434 0.859660664 0.823888276 0.8662114 0.893194958 342861344 cutinase Mycobacterium colombiense CECT 3035 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 1.295352537 1.25050082 1.210626304 1.284954701 1.27562527 1.295952973 1.265593772 1.23231319 1.232479373 1.237268034 1.219113937 1.227581048 1.258805428 1.217949747 1.194359645 1.243015472 1.268032242 1.268204508 206679991 dehh109 Rhodobacteraceae bacterium HTCC2083 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1.006502315 1.018875506 0.94032318 1.046136497 1.010969077 1.002015581 0.974993891 0.991929129 0.997657322 1.00950238 0.951760867 1.017024689 0.998064194 0.964284854 0.965312365 0.956809847 1.016245895 1.001572597 189210501 lactase_fungi Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.878466601 0.829832744 0.862802517 0.91424917 0.90571475 0.884017752 0.879652368 0.815855118 0.868581004 0.824049294 0.881719615 0.915303074 333988879 nirb Mycobacterium sp. JDM601 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.819711593 0.79480482 0.827153511 0.794372775 0.807519867 0.833353709 0.855406034 0.795949679 0.810744492 0.836914482 0.837467231 3378434 nahf Novosphingobium aromaticivorans Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.030877954 1.037453072 1.052254571 1.079699339 1.088389146 1.102659227 1.079151139 1.069016053 1.08396474 1.076282689 1.047890101 1.09045293 1.068404482 1.080173673 1.086238264 1.034691785 1.063530051 1.041242522 365177736 mer Sinorhizobium fredii HH103 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.770066245 0.816236386 0.830590013 0.811744365 0.823448496 0.822552443 0.824418283 170748962 mer Methylobacterium radiotolerans JCM 2831 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 1.173923693 1.12497911 1.15630796 1.159285479 1.110581144 1.134971932 1.096387043 1.13164137 1.152675337 1.112643591 1.140057441 1.147830014 1.132970508 1.146634403 1.112399602 1.125908246 1.168286208 1.13150758 379051104 chitinase Salmonella enterica subsp. houtenae str. ATCC BAA-1581 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.948366121 0.897796285 0.905202879 0.896601325 0.924444693 0.932593298 0.922059792 0.947876168 0.925925344 0.926710229 0.866950579 0.903608034 0.907836994 0.85345233 0.836270755 0.89973869 0.941448765 0.933031093 156446889 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.916315449 0.927795802 0.963975845 0.909449909 0.886566438 0.911482982 0.869078907 0.814173029 0.926762138 0.924546342 0.910050488 0.862765129 0.830599802 0.887364668 0.838186279 0.93239736 0.965836431 422314041 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.807667598 0.921900341 0.817336121 0.822107052 0.810518101 0.782121075 0.85842902 0.789255404 0.830887336 0.800277214 0.879289206 289185423 amyA Clostridiales genomosp. BVAB3 str. UPII9-5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Clostridiales genomosp. BVAB3; 0.922523404 0.95968914 0.988948112 1.05751865 1.005658295 0.927665738 1.015172427 0.93468663 1.017790426 1.017412171 1.024594806 1.05293836 0.937483222 0.943284878 0.964971963 0.932399585 0.892871006 0.915364521 385677876 catechol_b Amycolatopsis sp. ATCC 39116 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 0.992908925 0.953817912 0.985118098 0.986472385 0.958564442 0.98426691 0.981722359 0.99440823 0.919898047 0.957304117 0.92374008 0.993148989 0.91784633 0.984451708 0.946037359 0.913510272 0.972880593 0.977285762 260088754 acetylglucosaminidase Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 0.931410143 0.904183656 0.890213823 0.886802375 0.891793523 0.923584816 0.905803216 0.941264989 0.870431407 0.864620679 0.878958167 0.887082568 0.898550246 0.853547331 0.849644599 0.823186288 0.924334996 0.905850667 145591430 dsra Pyrobaculum arsenaticum DSM 13514 Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 0.803928421 0.838341179 0.80078217 0.847756971 29137736 narg Salmonella enterica subsp. enterica serovar Typhi Ty2 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 1.007016871 0.925410593 1.036688336 0.958731536 0.961385539 0.928117259 0.893304188 0.93402618 0.991619183 0.913481687 0.990278842 0.987256904 0.946767487 0.937066727 0.926649918 0.944023001 0.960385566 0.964015004 334731350 cueo Ramlibacter tataouinensis TTB310 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 1.216823697 1.201355976 1.194600443 1.180759718 1.194083174 1.208192969 1.198948309 1.192396341 1.182213826 1.204120614 1.202308633 1.20330752 1.164298818 1.154476297 1.135121478 1.183268706 1.206565606 1.224169276 333901936 tktA Pseudomonas fulva 12-X Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 1.142886629 1.106584482 1.097095333 1.122783965 1.077051664 1.109307754 1.072702758 1.111924341 1.127853468 1.080066872 1.121344664 1.106655387 1.06841516 1.016063667 1.06853316 1.064549214 1.151447235 1.073395317 113934988 xylanase Caulobacter sp. K31 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.060663373 0.995475958 1.018592985 1.04041813 1.002800285 1.00626489 1.010999323 1.034045811 1.00462992 0.982041774 0.986434671 0.975651942 0.952548244 0.940308713 0.902003987 0.945397929 1.018146152 0.999368009 269790966 ara Thermobaculum terrenum ATCC BAA-798 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 0.953266315 0.980508691 0.903709763 0.889873743 0.945149139 0.952374279 0.921576406 0.982756597 0.909808877 0.989461218 0.912606574 0.944215865 0.942636101 0.94327229 0.892109659 1.005519563 0.956342734 0.961962968 395775137 badh Streptomyces acidiscabies 84-104 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 0.908066023 0.947194433 0.926188176 0.929414577 0.930643327 0.918393048 0.896215181 0.888259178 0.895384652 0.960173307 0.90907771 0.934546606 0.911077119 0.943229818 0.889096082 0.93531024 0.927631318 0.942789544 226364828 xylj Rhodococcus opacus B4 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.042275844 1.119014341 1.023488642 1.034513472 0.987812392 1.062181348 0.959350629 0.99012729 0.999546613 0.996825838 0.992745396 1.015821263 0.982250588 1.014382865 0.975227852 0.980470953 1.052156616 1.044686925 323144703 amyA Succinatimonas hippei YIT 12066 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Succinivibrionaceae;genus:Succinatimonas;species:Succinatimonas hippei; 0.837037616 0.848025708 0.844938207 0.801879021 0.81925199 0.857994136 0.862781665 0.824952675 0.819610841 0.85971884 0.850202926 0.852834336 0.846624442 0.846738696 0.837004662 0.869670958 383774919 xyla Bradyrhizobium sp. S23321 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.887605267 0.90338482 0.856935715 0.846191453 0.83247796 0.901016514 0.831412821 0.825957748 0.839263877 0.809338599 0.814183326 0.875630134 0.915024936 113902067 terc Salinispora tropica CNB-440 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.899162325 0.860827338 0.901490206 0.911548604 0.872555557 0.883726206 0.913092866 0.877401283 0.901145059 0.843118006 0.851626746 0.859466943 0.853494317 0.87018911 224823770 terc Pseudogulbenkiania ferrooxidans 2002 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania;species:Pseudogulbenkiania ferrooxidans; 0.995117105 0.987437668 0.937900533 0.987234804 0.912531478 0.954921956 0.960542847 0.964757891 0.965453198 0.92516358 0.913717806 0.963022948 0.887289636 0.911898763 0.857636271 0.878349497 0.978483204 0.961040343 307129496 xylanase Dickeya dadantii 3937 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.9401173 0.927412937 0.894593536 0.939265476 0.889599218 0.86504867 0.890301279 0.889388324 0.936291657 0.892116215 0.9072875 0.882603785 0.844142841 0.836300762 0.885007649 0.91881907 0.9084449 73538232 one_ring_12diox Ralstonia eutropha JMP134 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.116606228 1.106225335 1.084407174 1.091948997 1.04371476 1.092168677 1.022029876 1.061227625 1.049706563 1.058413818 1.061108526 1.080864778 1.057413225 1.050643369 1.029194103 1.078879245 1.108416364 1.09515063 299471541 actin_Stramenopiles Ectocarpus siliculosus Other Phylogenetic NA superkingdom:Eukaryota;phylum:Phaeophyceae;order:Ectocarpales;family:Ectocarpaceae;genus:Ectocarpus; 0.901944756 0.920238114 0.868448681 0.828145839 0.837787319 0.83336391 0.842841573 0.870465506 0.890110607 0.795798373 0.819040721 0.852026253 0.802265878 0.840405807 0.846494036 0.84972286 119876197 linb Stenotrophomonas maltophilia R551-3 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 0.835935749 1.041176235 1.029914835 0.835695191 162707916 catechol uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.033706748 1.014370096 1.005243699 1.029791589 0.990951431 1.019824598 1.011365681 1.025725853 1.018331017 1.023885659 0.999222773 1.01892267 0.956962126 0.973279778 0.914041858 0.974782746 0.993601654 0.96117219 164562254 xylanase Pleurotus ostreatus Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 0.878191743 0.830007939 0.829828982 0.924056554 0.846142408 0.812038362 0.892225363 0.85074891 0.790521222 0.798202463 0.828827522 0.874309159 0.875043801 256392772 ara Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.171117822 1.15904191 1.142743202 1.155539156 1.150857257 1.185580371 1.145174857 1.127578983 1.128543549 1.130215599 1.150778294 1.132138146 1.145664044 1.118022023 1.117018687 1.123732243 1.152159896 1.11838809 197713143 catechol_b Streptomyces sviceus ATCC 29083 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 0.790312587 0.804694347 0.81443907 0.835786162 145702471 3HP_CoAs Metallosphaera sedula DSM 5348 Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 0.83823226 0.965705286 0.927133564 0.878510805 0.864977232 0.911004164 0.867062684 0.859121504 0.877984372 0.890767562 0.85687356 0.847591075 0.861136148 0.903573489 0.895055947 0.892133144 0.990459933 0.938753893 2246754 one_ring_23diox Pseudomonas putida Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.839430129 0.835875012 0.870033278 0.784855123 0.823124904 0.833749603 0.82055305 0.843281856 0.826343128 0.819138608 0.830939114 0.827674648 74056076 SoxB Thiobacillus denitrificans ATCC 25259 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 0.833614269 0.852196773 0.883785816 0.918036532 0.905759178 0.861434489 0.912660339 0.884415764 0.895598491 0.898547808 0.899993499 0.882606745 0.825335836 0.789915824 0.814342392 0.838098184 0.903889732 0.891738513 372278577 alkb Oceanicola sp. S124 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 0.817701103 0.811185599 0.802774474 0.804612987 0.829969488 0.857479259 116687097 mhpa Burkholderia cenocepacia HI2424 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 1.131961986 1.136607026 1.105602188 1.092522718 1.036707675 1.104118574 1.059849865 1.207082268 1.107767423 1.088808932 1.087269229 1.069248316 1.042809817 1.058438311 1.037140406 1.081047442 1.124043113 1.127329934 41407367 amyA Mycobacterium avium subsp. paratuberculosis K-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.787171314 0.803388348 0.80892909 0.867339166 83771612 nitrilase Aspergillus oryzae Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 1.01703089 1.00448204 0.994519112 1.06208072 1.009740163 1.047268588 1.076992638 1.047988859 1.076320401 0.991893346 0.997103816 1.023723303 1.001671118 0.969171956 1.039585751 1.011983609 1.049516204 1.016912892 125497235 pula Streptococcus sanguinis SK36 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 0.811931671 0.854083459 0.820875702 0.860001545 0.906446447 0.858924192 0.894186008 0.863172933 0.847929786 0.859556405 0.842265337 0.878184128 0.827836031 0.843965828 0.849673717 0.838443202 0.840295533 325979728 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.886759133 0.885411843 0.867364154 0.862234463 0.836199717 0.855011249 0.857226318 0.894832789 0.865290322 0.844200957 0.840938424 0.81069588 0.861848477 0.841586782 0.834801008 0.883018591 0.897061762 186466867 ccmL Nostoc punctiforme PCC 73102 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 0.809468557 0.833289576 0.785727181 0.833202439 0.822475466 0.809419901 0.802320266 0.883977194 0.75327639 0.829292373 312960146 vana Pseudomonas fluorescens WH6 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.073252493 1.1327998 1.074278968 1.088907405 1.075263843 1.067257234 1.049564837 1.090860196 1.088730518 1.062520998 1.066186976 1.075505607 1.057024801 1.01128977 1.015360341 1.047878459 1.078061271 1.075405709 302915477 glucoamylase Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.920863995 0.882712922 0.834026316 0.879024753 0.961545315 0.889227067 0.896415553 0.96224484 0.933878704 0.872176233 0.907149022 0.955676724 0.942268458 0.898806572 0.842883123 0.917678824 0.950438566 0.823757507 87080642 amyA Arthrobacter globiformis Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.970843069 1.014538967 0.953123423 0.998837885 0.939436255 0.972734849 0.94883733 0.98055205 1.00194773 0.983188494 0.900829637 0.935240974 0.869298297 0.967522166 0.810698225 0.90588106 1.014998033 1.039601694 164455700 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.870805409 0.90127333 0.892134986 0.866844242 0.899259026 0.861353696 0.905743748 0.858276849 0.882363122 0.861493607 0.826948512 0.905856699 0.90019269 0.888963899 0.915190036 0.913311551 0.948792807 326446511 endoglucanase Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 1.069882104 1.023368813 1.034077093 1.034144401 1.045841966 1.068705451 1.061187134 1.086207712 1.03583395 0.996594339 1.064951783 1.044469562 1.063677813 1.006633831 1.024352678 1.03732748 1.053377919 1.041980675 226953418 b_lactamase Acinetobacter sp. ATCC 27244 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.996059108 1.02165089 0.990697152 1.104724226 0.959791818 1.022461802 1.085807904 1.069879365 1.053565749 1.01127903 1.013477941 1.049807204 1.003580812 0.956075625 0.91387229 1.000471102 1.023565489 1.021752634 111149272 amyA Frankia alni ACN14a Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 0.855749212 0.951826653 0.866438276 0.912121586 0.845623261 0.893285959 0.813355107 0.818792044 0.89528585 0.909197897 0.875975002 0.908925524 0.873567783 0.845634509 0.867183003 0.905314508 0.910089107 146192102 catechol Bradyrhizobium sp. ORS278 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.116006506 1.117566971 1.100442671 1.112564358 1.101170752 1.123428866 1.070415963 1.100292566 1.088821713 1.08139709 1.092441735 1.08816312 1.109031739 1.083589828 1.068231663 1.069792859 1.106451243 1.080103854 119387816 ben_bcla Paracoccus denitrificans PD1222 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.955121878 1.010473761 0.973665664 0.982811348 0.926826036 0.973185902 0.953311147 0.966440686 0.971091675 0.978586289 0.957507643 0.936411943 0.928628104 0.937143446 0.879818311 0.878887134 1.031327277 1.020521797 152056 amie Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.842104891 0.877394202 0.872133654 0.868292163 0.84556238 0.84526749 0.878194206 0.789324838 0.850865279 118667595 arsc Delftia acidovorans SPH-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 0.834479704 0.853476639 0.851628228 0.828825038 0.865349914 0.824285245 0.847860513 0.851914117 0.817749668 0.864176083 0.888187737 340518748 dehh109 Trichoderma reesei QM6a Organic Remediation Chlorinated solvents NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma reesei; 0.808727615 0.850133512 0.841816501 0.829665421 0.820981608 0.860369954 0.810742767 0.812486894 0.801257133 0.863073019 0.893646765 0.893179108 0.892922188 0.902763251 0.820872617 0.915747519 167348367 mult_ring_12DiOx Caulobacter sp. K31 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 0.845717672 0.917770503 0.820538692 0.880610953 0.826823969 0.863105277 0.818705265 0.8815928 0.918842708 0.830698402 0.820607808 0.801981381 0.882297197 0.879280439 0.900733757 209521285 rubisco Burkholderia sp. H160 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.860206463 0.781035586 0.837193603 0.808968725 0.824080003 0.828704726 0.831426499 0.815642513 0.842742347 0.855884109 0.843472528 0.814731887 0.797436607 0.796201941 0.826909749 0.862852022 117675715 ppk Cryobacterium psychrophilum Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Cryobacterium; 1.23989684 1.197416227 1.185289851 1.204638715 1.173333387 1.208950877 1.185582809 1.199099726 1.186535045 1.169087872 1.154672285 1.192308003 1.136717287 1.144265779 1.123000558 1.176571418 1.217720713 1.201741447 296115738 acetylglucosaminidase Gluconacetobacter hansenii ATCC 23769 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 1.162064214 1.118939125 1.069514482 1.143517707 1.083136032 1.096411381 1.071265555 1.116400763 1.11352505 1.086105086 1.067910688 1.115754589 1.035621773 1.042356023 1.00003371 1.043970388 1.140258309 1.170611649 398355246 exaa(moxf) Sinorhizobium fredii USDA 257 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 1.104098582 1.10780894 1.121468348 1.093950613 1.09542145 1.143707988 1.088503325 1.113527501 1.11350691 1.062855194 1.156285347 1.100498401 1.016463687 1.084968712 1.045551378 1.057076174 1.061995315 1.109162833 158523836 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.802275385 0.794033694 0.827413863 0.822747396 0.802539515 0.784635323 0.824797243 0.806188173 0.832062651 209520435 linb Burkholderia sp. H160 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.949379502 0.962097182 0.897820757 0.904765914 0.902044324 0.917531795 0.913837754 0.878353619 0.92920159 0.920669671 0.911714928 0.903968942 0.895094456 0.867492204 0.853163803 0.914002208 0.926833879 0.926544366 119898644 arsc Azoarcus sp. BH72 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.363404426 1.328684305 1.308580144 1.346360448 1.309571406 1.339841358 1.31217673 1.32293634 1.324601955 1.310009601 1.306501117 1.340086326 1.297210747 1.292164339 1.31477203 1.350982105 1.354821112 1.287754861 300390295 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria; 0.809370334 0.805670511 0.828225884 0.801176436 0.795637322 0.904302864 0.797018855 0.797253821 0.830241596 0.815542284 0.782079713 0.847652179 365896455 TIM Bradyrhizobium sp. STM 3843 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.949072162 0.844617991 0.875947748 0.842968702 1.03652627 1.088244368 1.08839227 0.888706628 0.815862387 1.068726624 1.070238184 0.883326615 1.00093465 1.100667948 0.974623347 1.060380626 0.897326963 0.973134523 365893995 SoxA Bradyrhizobium sp. STM 3843 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.914675583 0.968760231 0.898641372 0.939120417 0.944320588 0.937211538 0.83652783 0.888955066 0.863554378 0.926072762 0.918307815 0.922117317 0.907790707 0.950465145 0.919341676 0.917919354 0.979231081 260850322 mnp Lactarius fulvissimus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Russulaceae;genus:Lactarius; 0.843697518 0.918281679 0.883885475 0.887163901 0.896641477 0.903994625 0.893197828 0.912572461 0.904052609 0.872664751 0.840811321 0.892583758 0.821692122 0.831993761 0.825472703 0.834548875 0.850899133 0.876969116 296284472 phytase Citromicrobium bathyomarinum JL354 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 0.998841554 0.975031597 0.911100858 0.987889048 0.984934228 0.927995954 0.936917793 0.970358789 0.958000402 0.929272229 0.932648028 0.942149342 0.961524081 0.912725571 0.875256717 1.000122465 1.080619441 0.949292999 359273595 ccmN Synechocystis sp. PCC 6803 substr. PCC-N Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 0.810549462 0.825478664 0.825767441 0.793781459 0.849029206 0.834547333 0.790117349 0.801141774 0.801233185 0.814975842 0.871898747 315412059 amyA Micromonospora sp. L5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.398224392 1.388539987 1.363150045 1.389116462 1.359272429 1.41536439 1.36153672 1.365117359 1.358868676 1.365526325 1.373873997 1.35518743 1.323389226 1.326231583 1.301279679 1.354705044 1.392474293 1.359023908 151368477 phenol_oxidase Tricholoma terreum Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Tricholoma; 0.782148713 0.792264762 0.790388551 0.824712462 0.82223735 0.807228217 0.970863662 0.820957915 367048837 badh Thielavia terrestris NRRL 8126 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 1.101380971 1.064724269 1.053608679 1.096524309 1.084618625 1.06778403 1.050837838 1.068978968 1.060724389 1.060560632 1.037604592 1.086371248 1.064248573 1.04443923 1.057128881 1.049500389 1.085424329 1.073030716 115377085 ppk Stigmatella aurantiaca DW4/3-1 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.793254448 0.842818934 0.817075921 0.790447323 0.822957405 0.852835864 164455806 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.096961003 1.09557615 1.059870001 1.076920809 1.053859553 1.06748175 1.021374584 1.045077449 1.050742611 1.065290626 1.039814387 1.061658908 0.994918099 1.03833175 0.9388001 1.0116706 1.070130195 1.109609301 210160317 acetylglucosaminidase Collinsella stercoris DSM 13279 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 1.156430407 1.089284103 1.08229835 1.157521531 1.094003023 1.133998237 1.100538849 1.110483714 1.077270635 1.070688016 1.081062408 1.097497661 1.076847287 1.017580581 1.026933223 1.081569785 1.131134102 1.089212473 26278886 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.917101928 0.966604563 0.865781444 0.946386326 0.905125516 0.96697686 0.854160737 0.86141393 0.940756373 0.913326552 0.860739555 0.883716571 0.875258411 0.919385866 0.915035392 0.890351366 0.944659876 0.968363098 91787939 pcpe Polaromonas sp. JS666 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.759704862 0.832906286 349792380 nifh Thiorhodospira sibirica ATCC 700588 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 0.787805761 0.841466686 0.854206846 0.862512106 0.799450279 0.83555224 0.802804571 0.797129483 0.816889532 1.024978537 17232055 FBP_aldolase Nostoc sp. PCC 7120 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 0.888316026 0.825179804 0.823965899 0.909137679 0.841831388 0.866307793 0.85599263 0.885465221 0.894167863 0.833532428 0.87911584 0.8517462 0.855765424 0.843038592 0.876298548 0.874124333 302550937 amyA Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 1.07242375 1.045911243 1.04801685 1.064661834 1.024590547 1.049003767 1.036393369 1.043294612 1.039708357 1.054537092 1.032973548 1.042294866 1.063337153 1.028277969 1.046688106 1.013254009 1.061176705 1.049532337 260062448 amyA Robiginitalea biformata HTCC2501 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 0.915062202 1.005467606 0.919689872 0.920679405 0.863629965 0.906965301 0.844256047 0.922773402 0.920283083 0.931337004 0.902224664 0.906614027 0.895906579 0.936614175 0.897112133 0.901572084 0.940647785 0.914637862 89899022 FBP_aldolase Rhodoferax ferrireducens T118 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 1.252290689 1.203984499 1.236585132 1.262734836 1.26530409 1.207684919 1.235606466 1.27799295 1.254714056 1.196038551 1.248398435 1.309538167 1.242869568 1.181386177 1.255266876 1.294288071 1.242535201 1.181071664 70930952 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.027882514 0.941243987 1.009892223 0.961969185 0.942730221 0.866394012 0.954979391 0.85794995 1.05477606 0.950122424 0.979120515 0.94270263 0.953160709 0.861303523 0.91265037 0.888263532 1.004742642 0.966155462 118740910 dmsa Enterobacter sp. 638 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 0.90595633 0.923641226 0.908617907 1.031060523 0.920417172 0.945152103 0.996008473 0.967830026 0.991081195 0.893931238 0.889337544 0.993477271 0.876651721 0.85790779 0.833990451 0.876152548 0.949471654 0.9441849 312961482 tktA Pseudomonas fluorescens WH6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.007604957 0.888874605 1.111026431 0.948405362 0.914267751 0.892082194 0.921912727 0.859606999 0.937210738 0.956616651 0.802829153 0.918338625 0.91307973 0.822383951 0.939668347 1.039241964 0.918613525 256397567 amyA Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.405265102 1.397560703 1.35216942 1.388244524 1.354741233 1.396060434 1.345402597 1.334651052 1.34762848 1.343222544 1.378816488 1.388427154 1.362110452 1.342800153 1.347016336 1.353445287 1.375749024 1.328795098 149202329 amie Roseovarius sp. TM1035 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.883120565 0.906696409 0.840260624 0.911570349 0.855352389 0.905943602 0.900751083 0.888194431 0.901524566 0.916428397 0.845834957 0.914972311 0.830221409 0.816118333 0.816608618 0.853617785 0.91061982 0.926217443 148834499 dmsa Vibrio shilonii AK1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 0.947701676 0.897700397 0.974106034 1.00364784 0.971967767 0.952393908 0.946283194 1.010806674 1.064201452 0.946192754 0.913223098 0.907782986 0.963132339 1.013255263 1.022019801 0.922764872 1.016823413 1.002137746 126236567 mult_ring_12DiOx Mycobacterium sp. JLS Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.974417421 0.926022887 0.973082188 0.942576407 0.901059287 0.927923047 0.958115542 0.862862667 0.920177325 0.927292302 0.925548084 0.922573416 0.916626284 0.904973107 0.839469276 0.8942775 0.942604357 0.943260706 311218778 terc Rhodomicrobium vannielii ATCC 17100 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 0.837869701 0.862731843 0.89882816 0.824945571 0.846426404 0.939785975 0.840177943 0.847860271 218645705 phytase Buttiauxella agrestis Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buttiauxella; 0.803308086 0.883687077 0.831817042 0.844158095 0.861510018 0.839352302 0.87626567 0.81414738 0.89759255 0.880817297 0.80602731 0.877040397 0.897607279 0.819635865 0.843027415 0.873208871 0.86884284 254506647 endochitinase Vibrio parahaemolyticus 16 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 0.909444792 0.859667737 0.914526962 0.89194394 0.963099848 0.876166747 0.913519919 0.841302205 0.887918622 0.916909464 0.868589735 0.924871243 0.853822695 0.871989402 0.927305247 0.888871907 0.8649006 333938303 ppx Novosphingobium sp. PP1Y Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.154325742 1.167856688 1.142792923 1.147596562 1.126933363 1.149560383 1.126480026 1.120906239 1.158032603 1.158340777 1.130168919 1.118636413 1.120321844 1.108730042 1.056915867 1.110365579 1.169255397 1.133233493 355537128 acetylglucosaminidase Agrobacterium tumefaciens CCNWGS0286 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.873956273 0.895621934 0.860335835 0.902116697 0.858280217 0.865528571 0.827463911 0.858755673 0.904657887 0.859534894 0.879012701 0.850920228 0.844406664 0.89003704 0.852593474 0.835955085 0.876879483 0.900017723 149120191 soxY Methylobacterium sp. 4-46 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.15261972 1.165847295 1.155383562 1.158556864 1.148542666 1.160166334 1.105781611 1.163159301 1.140188561 1.179596185 1.143335914 1.144826981 1.115238436 1.143019708 1.116898117 1.117892343 1.169509685 1.185797614 383458899 ppx Corallococcus coralloides DSM 2259 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 1.160621526 1.122814918 1.149991481 1.268511012 1.171244944 1.091859944 1.117188988 1.211560055 1.217514018 1.105531767 1.15181384 1.248234878 1.135434265 1.052117904 1.155230958 1.142237313 1.165986736 1.081300952 66840867 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.776595628 0.804176823 0.836319633 0.817402318 0.804158977 0.782584059 307944736 nasa Roseibium sp. TrichSKD4 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.860895894 0.849499252 109290262 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.793612127 0.819510751 0.796257334 0.884428662 0.84204747 0.778784171 0.817876192 0.782930131 0.821966191 0.796036635 0.810636457 0.848981304 0.778839099 0.819660013 0.840205058 0.806991827 134080742 mer Aspergillus niger Metal Homeostasis Mercury Detoxification superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 1.070602136 1.034712663 1.04967696 1.081269943 1.006454651 1.031369635 1.005342085 1.033481147 1.051262837 1.035037681 0.998963599 1.033331715 1.018879342 0.999674556 0.990557978 1.008932619 1.088570083 1.0292315 169846830 protease_serine_fungi Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1.046663287 0.954240544 1.003697935 1.057925743 1.020267021 1.016472268 1.041517149 1.048447839 1.047716184 0.985617786 1.031298756 1.043954961 1.021345466 0.972422785 0.989563374 0.991477897 1.046438476 0.951197753 50553192 phospholipase_B_fungi Yarrowia lipolytica virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 0.883541785 0.790442662 0.891402594 0.918018684 0.85271534 0.878714663 0.931097463 0.967511843 0.938567712 0.894652735 0.826396692 0.879544059 0.842490848 0.823251843 0.806721052 0.867468398 0.858225525 56696593 urec Silicibacter pomeroyi DSS-3 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.860904708 0.845579066 0.857242561 0.84567724 0.851741816 0.849076353 0.895123549 0.879108978 0.835585868 0.837848971 0.801302082 0.848369888 0.76657537 0.806107204 0.838272128 0.852318098 0.892392782 209401902 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.165874373 1.132996466 1.16054494 1.134916287 1.152322141 1.183284366 1.097808266 1.136013305 1.147817269 1.146071315 1.105124193 1.161923658 1.122025314 1.151261425 1.173495151 1.147456814 1.163324782 1.163234163 154285146 phospholipase_A2_fungi Ajellomyces capsulatus NAm1 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 1.37721203 1.345626767 1.333969919 1.343762004 1.333770339 1.317706587 1.312167088 1.340527914 1.313823917 1.294678002 1.323688756 1.362170118 1.282404161 1.253402345 1.286666468 1.318207198 1.326010918 1.299556276 255068644 cysJ Neisseria sicca ATCC 29256 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 1.326600425 1.285160094 1.293821809 1.290805366 1.237034671 1.300144779 1.206168991 1.255829796 1.268801548 1.265402903 1.265278933 1.275302536 1.258845879 1.257301174 1.209037971 1.245354554 1.292119118 1.261661091 33597275 napa Bordetella parapertussis 12822 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella parapertussis; 0.949814777 1.019913841 1.024408575 1.026710103 1.079391035 1.095659747 1.093782817 1.052979553 1.006811946 1.034646196 1.013251429 1.08307236 1.066861008 1.00536293 1.004095008 1.067549843 1.053126428 1.016749227 154246440 nira Xanthobacter autotrophicus Py2 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.875186839 0.885392345 0.920915045 0.875973495 0.877038156 0.865268521 0.858028333 0.836779256 0.92217694 0.914539016 0.889126173 0.895341233 0.862678605 0.890574556 0.850879649 0.825149008 0.915554993 0.929982142 363414836 xylc Acidovorax sp. NO-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.963205002 0.964902239 0.940134399 0.96768954 0.887821942 0.924364741 0.912469711 0.95700818 0.94987682 0.965800414 0.887617063 0.964663283 0.91446902 0.910507961 0.895029116 0.940735219 0.97280298 0.965368986 302416491 cellobiase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1.325230823 1.281438277 1.264043278 1.306566167 1.281945716 1.302173044 1.24260081 1.307132244 1.288739876 1.256632139 1.264311866 1.30410636 1.267486705 1.209960811 1.242070511 1.259795282 1.326147699 1.255748669 33284997 chnd Acinetobacter sp. NCIMB9871 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.806182277 0.823542779 0.803378766 0.814391738 0.815600914 0.810497232 0.857792352 0.836914199 0.825373396 0.775368733 76056947 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.914523629 0.96110031 0.881171017 0.908474471 0.887143064 0.908697633 0.896826135 0.908313283 0.882000713 0.885074278 0.886821244 0.921210833 0.92177973 0.85111564 0.911580496 0.888902304 0.937416998 0.992229469 320529875 amyA Selenomonas artemidis F0399 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 1.37906918 1.326632873 1.326201256 1.335568073 1.310213755 1.329415759 1.310420055 1.319900002 1.352039093 1.2972952 1.319240474 1.31724775 1.304144636 1.247030249 1.268573227 1.275871331 1.373530711 1.299805188 83941267 dehh109 Sulfitobacter sp. EE-36 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.812627764 0.851948219 0.819600641 0.877309478 0.858492695 0.854650928 0.84679215 0.831869968 0.848764654 0.818235031 0.868884554 0.808219141 0.815849796 0.864984197 0.889646927 403415333 badh Fibroporia radiculosa Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Fibroporia; 1.286138582 1.283544405 1.287829139 1.26124854 1.274638143 1.296124235 1.285887235 1.270728338 1.258599272 1.284181659 1.272870473 1.286030892 1.241547538 1.232131641 1.233401391 1.266933192 1.290048224 1.281372679 4572432 metc Sphingomonas paucimobilis Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.128461815 1.126022864 1.068874816 1.135489297 1.085933025 1.124355725 1.086657129 1.070488731 1.089934127 1.101408522 1.114465603 1.119765324 1.107732882 1.096547184 1.064301355 1.08753556 1.109129957 1.091417002 150026827 mer Sinorhizobium medicae WSM419 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.903422136 0.96803753 0.937945529 0.859081344 0.963445803 0.90658809 0.926621681 0.932125032 0.884914631 0.983706094 0.965098421 0.937142005 0.867682364 0.820924637 1.027309011 0.976344895 0.980252416 339502986 tktA Roseobacter litoralis Och 149 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 0.867297419 0.904142909 0.873366763 0.830973095 0.842682463 0.843228249 0.828073577 0.837651597 0.858088483 0.870847136 0.841889813 0.831593577 0.799448428 0.800790365 0.846975369 0.862551711 0.913753012 284390204 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.974101564 0.992028509 0.976639279 0.987304474 0.938692199 0.970770537 0.938757471 0.953968136 0.929911024 0.958443741 0.903812773 0.968969973 0.938771235 0.927993535 0.935220376 0.93101043 0.984101935 0.992102363 320103169 CsoS1_CcmK Isosphaera pallida ATCC 43644 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 1.057550691 1.067739849 1.037854615 1.090490057 1.074936564 1.06966309 1.042003409 1.036886007 1.057592054 1.013341463 1.014551888 1.055185286 1.048167029 1.02636591 0.984143829 1.012854239 1.07765041 1.051901576 158523516 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.187875546 1.137775909 1.169343613 1.195110047 1.154885636 1.140060848 1.150222327 1.192819586 1.183013506 1.162097662 1.116713672 1.177142463 1.134212559 1.091271464 1.083013922 1.148042394 1.162125419 1.149465443 377540759 dsra Escherichia hermannii NBRC 105704 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 0.835532448 0.828800656 0.806950567 0.839368791 0.843012468 0.803712733 0.829881962 0.859653544 0.835567959 0.777566814 0.807623854 0.813956217 0.758612594 0.835402567 229494341 cdh Rhodococcus erythropolis SK121 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.912292592 0.907134391 0.826005924 0.964013854 0.849131185 0.961461724 0.952850465 0.888813365 0.893363065 0.894197529 0.90411085 0.887413237 0.902770349 0.866474126 0.943886814 0.846004035 0.921700039 0.931194145 159899978 pectinase (pectate_lyase) Herpetosiphon aurantiacus DSM 785 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 1.326346432 1.334000171 1.290032015 1.306830504 1.288346644 1.33087834 1.278427639 1.303921139 1.288691658 1.293417557 1.288885256 1.286737907 1.279499643 1.261987789 1.283337586 1.284763517 1.343709313 1.309327204 325962201 amyA Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.939198743 0.900447253 0.942305831 0.98245335 0.880614464 0.928487403 0.876057783 0.957313334 0.944133424 0.917300279 0.927335027 0.931439799 0.93046713 0.885045664 0.901154273 0.892073543 0.949889101 0.935836377 328843317 ara Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 1.100478403 1.098192236 1.106439589 1.129726296 1.107409638 1.114045327 1.106311284 1.133694438 1.109584241 1.079602982 1.10898139 1.098214719 1.081276313 1.045841467 1.051276189 1.043847223 1.110931734 1.107082869 377574404 nrfa Mobilicoccus pelagius NBRC 104925 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 1.258593945 1.21793842 1.235936015 1.232482937 1.22615643 1.238494641 1.218822412 1.205480507 1.212656214 1.230245328 1.21855032 1.204913783 1.19212908 1.183623904 1.185706184 1.184086379 1.288548394 1.200305967 255342208 pme Flavobacteriaceae bacterium 3519-10 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 0.889348164 0.880981541 0.922757092 0.903560407 0.889352503 0.870668015 0.869642915 0.905760562 0.890905608 0.87848418 0.819357826 0.857183187 0.829580646 0.823191345 0.814774582 0.823364719 0.905325023 0.899606092 257336920 FBPase Sinorhizobium meliloti Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 0.987640823 0.961567232 0.983224061 1.031210966 0.952664757 0.9989808 0.920465326 0.9171309 0.958602916 0.915750292 0.945856745 0.958789684 0.919786173 0.908185309 0.931335101 0.897894006 0.939627727 0.977140816 116222345 heparinase Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Heparin superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.209823108 1.214461805 1.198313389 1.173347157 1.168584291 1.207340355 1.150418907 1.167021751 1.164418415 1.169722815 1.159217586 1.219162068 1.136546855 1.166905401 1.131894182 1.160184933 1.195009475 1.188168325 357265842 ccmM Crocosphaera watsonii WH 0003 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 1.222485565 1.224967915 1.180401797 1.233837736 1.245617053 1.237110438 1.179350945 1.205902939 1.225217999 1.21337176 1.176033446 1.199502979 1.193658416 1.172271859 1.176903597 1.196108878 1.253355031 1.230933846 39940908 tannase_Cdeg Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.821245595 0.818642092 0.82524148 0.867780312 0.831824799 0.823662425 0.83152248 0.847844521 0.858959608 0.836687912 0.82552858 0.846033826 0.849572282 0.782997282 0.827101471 121611520 pcpe Verminephrobacter eiseniae EF01-2 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.835334011 0.822729637 0.864601886 0.85866131 0.838483169 0.829611099 0.784346435 0.84060824 0.85268633 0.84259069 0.843994064 154175407 codh Campylobacter curvus 525.92 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 0.890019018 0.915361862 0.92360682 0.814792516 0.816796268 0.870319036 0.879853539 0.867181361 0.890477243 0.863206352 0.940446838 0.771035154 0.877626044 0.82849967 0.823024715 0.837973591 0.891257563 379763494 amyA Mycobacterium intracellulare MOTT-64 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 1.330497589 1.353020377 1.328784015 1.314787904 1.342962254 1.363294598 1.299595795 1.330604522 1.265817129 1.317899439 1.325139395 1.300029726 1.300099174 1.326735367 1.31390777 1.315026046 1.354697723 1.330073496 219545192 rubisco Methanosphaerula palustris E1-9c Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanosphaerula;species:Methanosphaerula palustris; 0.979782038 0.947018692 0.891658152 0.952981123 0.901273166 0.935814426 0.897220987 0.899297789 0.965193417 0.936864163 0.907264603 0.923338917 0.912231084 0.949539348 0.877745877 0.919546533 0.968551173 0.968855268 68349021 nirs Pseudomonas sp. C10-2 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.193490007 1.223168026 1.143763428 1.153510969 1.163539809 1.199041227 1.178253887 1.136561689 1.168599932 1.17409812 1.183592819 1.151285572 1.19473736 1.165986076 1.148982968 1.180489679 1.16637623 1.182147642 254383540 amyA Streptomyces sp. Mg1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.070270579 1.04036034 0.996046078 1.0305777 0.976206423 1.039395462 0.96373445 1.003218033 1.025964904 1.024413739 0.976255594 0.999486889 0.965354133 0.992282134 0.898203765 0.987325818 1.022756402 1.041948153 345852777 one_ring_23diox Streptomyces zinciresistens K42 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 1.107150476 1.082006739 1.017828329 1.099057346 1.017490673 1.070828486 1.040311775 1.04990405 1.091147557 1.057124353 1.03939666 1.053449601 1.031528136 1.029362243 0.989303124 1.024767375 1.088969658 1.091169001 333915906 vana Delftia sp. Cs1-4 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 1.073653802 1.060438568 1.058761025 1.054497923 1.012880367 1.045642529 1.010051978 1.026918226 1.011375214 1.053803446 1.044400838 1.034872595 1.028736764 1.040133658 1.006074144 1.043670442 1.053500988 1.060600009 40745321 protease_serine_fungi Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.902932118 0.875116153 0.854739436 0.906317583 0.866265393 0.879507572 0.868062329 0.875627824 0.856709039 0.815493248 0.877341262 0.884849141 0.86199182 0.853268007 0.943371814 0.88589011 0.906533195 0.88287153 118469689 amyA Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.948441766 0.830753974 0.860444537 0.87717352 0.800236261 0.805929111 0.865089745 0.863658852 0.812099666 0.858582874 0.846517672 0.80854439 0.816564707 0.815249298 0.870956371 0.83617153 224579309 rubisco gamma proteobacterium HRh1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.175079408 1.165702323 1.151165263 1.215325488 1.195169256 1.207172301 1.197797033 1.170006361 1.181673215 1.166000575 1.145689027 1.181113493 1.165178207 1.155229721 1.208810448 1.157163022 1.163124462 1.168581179 403649308 chnb Mycobacterium vaccae ATCC 25954 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 1.416531388 1.391612676 1.385577277 1.431698521 1.379733218 1.404686458 1.371607945 1.407412425 1.369751989 1.357106558 1.368074615 1.398062408 1.365084386 1.365249916 1.369591256 1.395493963 1.371225604 1.359832564 74056686 amyA Thiobacillus denitrificans ATCC 25259 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 1.051254372 1.081896151 1.005362188 1.036004147 1.060050926 1.075262854 1.012843612 1.019379855 1.012004342 1.014699552 1.023234358 1.036628561 1.032019724 0.990224848 0.981526106 1.016444981 1.050258011 1.076979337 34017032 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 1.191543316 1.18446955 1.18043329 1.15918451 1.164066819 1.214857073 1.169139875 1.168121165 1.171720556 1.168967903 1.167459414 1.174756467 1.178200751 1.144364847 1.133731328 1.148457169 1.204819602 1.170490519 358241371 cdh Gordonia amarae NBRC 15530 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.867228881 0.797869547 0.829852116 0.855517688 0.805333181 0.81145164 0.833894182 0.814709891 118618410 sqr Mycobacterium ulcerans Agy99 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 0.809553324 0.798009153 83644004 chitinase Hahella chejuensis KCTC 2396 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 0.771821059 0.804034807 0.760607462 0.843404926 383453559 terc Corallococcus coralloides DSM 2259 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 0.909554419 0.957978354 0.846073267 0.937184306 0.857650297 0.894559883 0.835249814 0.875778023 0.902348776 0.813939625 0.877588944 0.853449884 0.899633891 0.833857403 0.890782953 0.975833401 302458936 chitinase Streptomyces himastatinicus ATCC 53653 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 1.112434719 1.200278837 1.07662489 1.092234525 1.071011859 1.084255784 1.09130099 1.084115882 1.080017325 1.087581295 1.068541228 1.089800222 1.069892734 1.059048207 1.046841838 1.072927059 1.079611984 1.057326114 108464563 ppx Myxococcus xanthus DK 1622 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 0.835825032 0.804651573 0.880977641 0.831834731 0.854389186 0.825387761 0.868316992 0.823768104 0.824579893 0.83793445 0.821041323 0.8809272 0.81358326 0.796108506 0.801309002 0.801168468 0.848791053 0.862676643 145214436 catechol Mycobacterium gilvum PYR-GCK Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.210310608 1.211249051 1.167808027 1.215076059 1.183257508 1.190950919 1.186729903 1.149620494 1.196582049 1.194678836 1.201403671 1.250889143 1.193443302 1.169223655 1.16802717 1.205863603 1.164577991 1.187602224 91204035 mer Candidatus Kuenenia stuttgartiensis Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Kuenenia; 1.162382465 1.153493052 1.13099301 1.149571056 1.109747039 1.164757836 1.123068924 1.150529526 1.163957045 1.134287407 1.103412489 1.125073065 1.099755321 1.098901528 1.100371902 1.087904796 1.155499822 1.148812566 86749031 vana Rhodopseudomonas palustris HaA2 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.927979911 0.892429995 0.93420157 0.963776044 0.933006476 0.915496827 0.980275044 0.94351382 0.961260738 0.923340054 0.876500734 0.960463879 0.873359281 0.830231533 0.885371595 0.962979765 0.969324426 0.921406683 150385878 ara Victivallis vadensis ATCC BAA-548 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 0.97777122 0.897225508 0.940840987 1.003256484 0.965640641 0.962989981 0.976880757 0.985685448 0.960630136 0.934045063 0.916949121 0.950080166 0.928374499 0.877463757 0.89309289 0.926370573 0.964656109 0.937940977 335436959 amyA Halorhabdus tiamatea SARL4B Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 0.991328956 1.033512638 0.980034376 1.002560712 1.002952218 1.04108793 0.993874879 0.959494564 0.950473361 0.984257165 0.983166245 0.989639662 1.005601062 1.015257653 0.986381993 0.973243374 1.008829601 1.051096809 188020044 ppx Providencia stuartii ATCC 25827 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 0.904339257 0.856633439 0.867834702 0.904529986 0.876823899 0.882537495 0.857540299 0.858520299 0.879462319 0.908279416 0.896126191 0.877770007 0.804637324 0.848460664 0.88435116 0.882516984 0.888997294 37900195 rubisco Synechococcus sp. OH20 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.877048061 0.91615779 0.854270367 0.869233033 0.871716867 0.906078771 0.901612922 0.867492231 0.881814979 0.829120527 0.833330959 0.878032283 0.870497611 0.886966909 0.862049844 0.892839793 0.911711128 373549418 mhpb Mycobacterium tusciae JS617 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 1.150312596 1.174725319 1.152683804 1.146204674 1.138441382 1.181614022 1.136601989 1.1171125 1.137974628 1.156073827 1.172290736 1.138696276 1.149172243 1.112842034 1.087976679 1.110408331 1.21361842 1.139027692 119404389 ppx Aspergillus clavatus NRRL 1 Phosphorus Polyphosphate degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 1.122225727 1.115890049 1.093275429 1.131578414 1.079839605 1.079080459 1.049409921 1.071576693 1.073727582 1.075974862 1.069374516 1.094075266 1.034542971 1.052703288 1.023130713 1.058060191 1.118802836 1.127358046 296029648 bphc Tsukamurella paurometabola DSM 20162 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 1.12775005 1.129249989 1.136039862 1.121154283 1.117624452 1.126867365 1.107218806 1.219553956 1.127715936 1.104114195 1.129283074 1.12251977 1.092593041 1.07873727 1.073836477 1.162838385 1.112665908 1.12317345 89068265 ppx Oceanicola granulosus HTCC2516 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 1.173218281 1.115726778 1.090508651 1.140388419 1.107843703 1.146311639 1.08137615 1.088784244 1.127067214 1.104280802 1.081738682 1.115134612 1.087639669 1.085686546 1.078694425 1.098924431 1.15325574 1.105495012 74038350 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.763346492 0.804399313 0.82958848 0.850599385 0.828690735 0.811951886 0.802784058 0.867886578 0.79653231 0.806431717 0.781005561 311229243 mult_ring_12DiOx Frankia sp. EuI1c Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.167731935 1.179985393 1.163697571 1.137280196 1.130661118 1.187194633 1.121655691 1.138732427 1.136653997 1.170997616 1.146411789 1.140993112 1.130642079 1.123844355 1.103193437 1.126060774 1.183282855 1.18237274 223896443 acetylglucosaminidase bacterium Ellin514 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 1.049772266 1.005437509 1.055384504 1.042736895 1.049308558 1.048461777 1.055627847 1.022423915 1.028514913 1.02906123 1.003859741 1.025964394 0.987111515 0.971259509 0.973453305 0.99654603 1.060897712 1.00456896 325181983 actin_Stramenopiles Albugo laibachii Nc14 Other Phylogenetic NA superkingdom:Eukaryota;order:Albuginales;family:Albuginaceae;genus:Albugo;species:Albugo laibachii; 0.792296176 0.83345782 0.867336697 0.824908925 0.840219274 0.787631703 0.797106625 0.818624547 0.811648486 0.807638258 0.822769324 364505647 hzsa Candidatus Brocadia fulgida Nitrogen Anammox NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Brocadia; 1.046030104 1.032279047 0.954639547 1.009777164 0.963764212 0.970065304 1.001159009 1.026845028 1.017604434 0.983175174 0.958374122 1.021939798 0.911827321 0.947255809 0.903700079 0.91453994 1.015079855 1.071068804 319945489 ara Lautropia mirabilis ATCC 51599 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 0.842138023 0.818812231 0.872657204 0.859736716 0.860364714 0.856452858 0.87552399 0.851534954 0.865283117 0.816097036 0.85173745 0.840471393 0.847586897 0.864784999 119497855 invertase_fungi Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation sucrose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.84836564 0.891180594 0.901729091 0.871627886 0.806513603 0.862885313 0.84093818 0.828586703 0.853805802 0.846119301 0.81572159 0.792513059 91774903 mauab Methylobacillus flagellatus KT Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 0.924977018 0.895696982 56694506 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.296726211 1.315580779 1.26705081 1.291441755 1.237529434 1.283155198 1.215996221 1.246085086 1.260521441 1.24420075 1.249557695 1.238873686 1.221328795 1.253173624 1.189742852 1.241080161 1.27509007 1.245670606 372269463 ppx Marinobacterium stanieri S30 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 1.112111084 1.077333941 1.093300707 1.145906672 1.098668944 1.11764271 1.106403513 1.126679073 1.124961158 1.089998634 1.103089549 1.115097302 1.074007913 1.043394938 1.022367744 1.081095097 1.1322681 1.080891573 398055627 bphF1 Brevibacillus sp. CF112 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus; 1.104525533 1.12134086 1.220309209 1.169099468 1.163498169 1.1511696 1.190662722 1.168077721 1.139552866 1.161557276 1.222103895 1.203084321 1.15364496 1.117435479 1.136021638 1.159967291 1.101618103 1.100362441 161384634 poba Phaeobacter gallaeciensis 2.10 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 1.342970474 1.324169382 1.308127353 1.297285295 1.289604218 1.321105808 1.295337674 1.281497972 1.298954912 1.288602627 1.29897137 1.283604225 1.25498879 1.277105298 1.253535549 1.264805605 1.314642817 1.325421822 403704926 B_lactamase_A Rhizobium sp. Pop5 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.281724655 1.211957913 1.232361945 1.268852144 1.197138463 1.225931045 1.208004929 1.240633697 1.232286619 1.254136088 1.204248022 1.250237268 1.201370753 1.190824452 1.186442536 1.211947444 1.295628368 1.251893039 255950840 exopolygalacturonase_fungi Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.913586757 0.99286997 0.912564372 0.881959655 0.938752368 0.941928153 0.903883288 0.847554253 0.8701753 0.918515576 0.879845076 0.880395663 0.886763556 0.823702442 0.858520351 0.866988624 0.909400234 0.941405107 221738110 rgh Agrobacterium vitis S4 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.936382063 0.911461141 0.957810966 0.940346659 0.97467361 0.924921253 0.982600129 0.975791301 0.942121233 0.975205523 0.947402419 0.945125252 0.890983939 0.961706451 0.824384766 0.924100968 0.925912799 383777473 badh Actinoplanes missouriensis 431 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.044493064 1.045512891 1.010946222 1.053234401 0.99434067 1.030537549 1.030003232 1.053157725 1.025307453 1.029109527 0.998028318 1.030029425 0.969730724 0.990728388 0.949084459 1.005187636 1.039140274 1.030510243 126952478 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.863005409 0.818809103 0.873694572 0.879957091 0.804615224 0.825620289 0.840159516 0.846042804 0.874115583 0.854235345 262263151 pcpe Rhodococcus sp. PN1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.833393037 0.864471623 0.826925691 0.882656555 0.808973858 0.823153812 0.80975012 0.852470504 0.87406325 302406735 rgh Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.838642011 0.821971615 0.833190644 0.872548281 0.86471863 0.8179947 0.841754977 0.856916913 0.823237187 0.881216369 0.837473191 0.816745096 0.832302918 0.872950907 383333215 vgb Mycobacterium phlei RIVM601174 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 0.86682833 0.844272301 0.844516027 0.86422372 0.843757807 0.870317484 0.853652087 0.840076583 0.870957595 0.901138277 0.848354874 0.853501702 0.797795544 0.870838386 0.837589563 0.881202618 365422841 ppk Bradyrhizobium sp. STM 3843 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.829342655 0.869954523 0.837079497 0.892866397 0.830911004 0.817043101 0.825437433 0.831948987 0.818622507 0.804493471 0.838980695 0.802290369 0.827224559 0.840054081 0.87033574 0.85105532 359289625 mdlc Thermus sp. CCB_US3_UF1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 0.927175649 0.90677675 0.910537713 0.923216424 0.922103968 0.909277272 0.872519378 0.895928126 0.897373972 0.893479917 0.905240661 0.926222025 0.902776059 0.892695078 0.882205714 0.879038143 0.943426367 0.922061779 149792878 pula Thermosipho melanesiensis BI429 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermosipho;species:Thermosipho melanesiensis; 0.942343647 0.951070756 0.946349587 0.961625093 0.9646316 0.928032394 0.968971014 0.950382258 0.953230264 0.946487036 0.922559233 0.943570882 0.914332453 0.920044398 0.896853331 0.881657018 0.937147001 0.951690034 38427012 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.319126516 1.259229131 1.277721618 1.292437227 1.308988053 1.348975405 1.303893156 1.248096496 1.243144296 1.285578905 1.31276299 1.256206532 1.272754423 1.283699943 1.20936395 1.268884929 1.30429109 1.281787965 357408793 narg Streptomyces cattleya NRRL 8057 = DSM 46488 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.07794394 1.004039643 0.989957843 1.034606164 1.006018241 1.048361377 0.998845251 1.039798353 1.044946743 1.007816335 1.000724232 1.000881431 1.001593495 0.991045367 0.974016358 0.988650324 1.027340226 0.987412916 302882339 phospholipase_A2_fungi Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 1.087412687 1.077879065 1.06466295 1.103441836 1.080261388 1.101183067 1.052351798 1.011824547 1.062359355 1.046422126 1.050185509 1.043122033 1.073898553 1.013819012 0.983118564 1.032092457 1.119448093 1.068536685 290959605 vgb Streptomyces scabiei 87.22 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.981525007 1.044923065 0.957718379 1.015286827 0.957401065 0.964182757 0.9679544 1.016102839 1.007563354 0.995979894 0.913688791 0.981415711 0.899946496 0.949903536 0.923791884 0.941210028 1.013394741 1.035782769 114800416 mer Hyphomonas neptunium ATCC 15444 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 0.946951461 0.941080362 0.940950771 0.976320272 0.940633138 0.948005547 0.942526291 0.937431084 0.957674424 0.908389663 0.910577286 0.944647013 0.89688879 0.881786249 0.888625192 0.883836602 0.96724888 0.93364583 88790371 PRK Nitrococcus mobilis Nb-231 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 0.969023862 0.97834083 0.959079809 1.012161906 0.991404747 0.965534009 0.986204083 0.978565166 0.963445034 0.957252674 0.94186546 1.019277654 0.979755898 0.952520965 0.954698891 0.979984952 0.983377948 0.944996563 387888191 cysJ Escherichia blattae DSM 4481 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 0.990103122 0.962138754 0.984112302 0.919688322 0.913624219 1.032557088 0.895882311 0.893382297 0.943070176 1.01911562 0.902909048 0.924434119 0.968423936 0.99641326 0.947829872 0.914779814 0.93661241 1.000942752 218680146 endoglucanase Rhizobium etli CIAT 894 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.926407856 0.89736569 0.907958941 0.816201822 0.875973337 0.87936171 0.901777966 0.884260608 0.821449303 0.849549889 0.854876186 0.918288686 0.87047961 334343526 tfth Sphingobium chlorophenolicum L-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 1.039135985 1.046456994 1.032878247 1.050697203 1.026815107 1.050533012 1.017809995 1.040138552 1.030324412 1.027813111 1.00784395 1.031246353 1.022966826 1.004746075 0.979752019 0.983555226 1.041663392 1.063724498 377539344 tehb Escherichia hermannii NBRC 105704 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 1.095896036 1.040942643 1.048056733 1.116456982 1.069321293 1.057676024 1.090285146 1.095631161 1.104581719 1.070385705 1.042540468 1.081973398 1.04903125 1.072400586 1.057756695 1.053038723 1.081035031 1.057903132 209401972 tutfdg Sulfate-reducing bacterium PRTOL1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria; 1.106515386 1.112236384 1.095968827 1.092800442 1.091474876 1.132752278 1.077451049 1.113277134 1.103073045 1.110680642 1.095493903 1.097887478 1.068826432 1.091725887 1.068670845 1.089355001 1.087803581 1.133466291 295675251 mult_ring_12DiOx Burkholderia sp. CCGE1002 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.073950459 0.978424931 0.960493137 0.989926038 0.999572182 0.995610322 1.042088699 1.034506241 1.011687776 0.967452044 0.968575695 0.9948065 0.980346051 0.939034783 0.968756932 0.918942072 1.020929223 0.943578979 320137219 bphF1 Selenomonas artemidis F0399 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 0.903190667 0.868245148 0.892324098 0.937195577 0.906797852 0.875679475 0.912345153 0.887319469 0.898395845 0.859997827 0.857653873 0.902103674 0.859988576 0.859310758 0.852932553 0.913123896 0.827271706 326415449 one_ring_23diox Polymorphum gilvum SL003B-26A1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 0.909403022 0.917163649 0.845162044 0.926458824 0.826778678 0.875446935 0.827953812 0.865641485 0.862230744 0.869609059 0.883197003 0.880027284 0.926530926 0.926406347 8515799 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.920667515 0.938395666 0.850699511 0.965198166 0.904925916 0.857727292 0.874828638 0.818576933 0.870079126 0.892968523 0.842694177 0.925164951 0.837147764 0.872353322 0.902079374 0.937590227 0.945366899 187928869 metc Ralstonia pickettii 12J Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.922785757 0.907949111 0.944239442 0.938721898 0.932307668 0.936127879 0.887332069 0.902144753 0.912102477 0.884622424 0.835228067 0.880987467 0.836960667 0.867000776 0.832923038 0.844455963 0.931585368 0.985201245 269218198 fthfs Actinomyces sp. oral taxon 848 str. F0332 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 0.973231619 0.993816099 0.981572632 0.970383067 0.964312237 0.983197634 0.951528247 0.95523895 0.968225001 0.992041328 0.941750527 0.971142903 0.932280405 0.954131393 0.861392549 0.959021091 0.979231711 0.979470408 296263880 GAPDH_Calvin Roseomonas cervicalis ATCC 49957 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 1.09137835 1.100567277 1.036998262 1.075325908 1.069602912 1.094990455 1.042266009 1.000121428 1.047632999 1.085679252 1.069359997 1.063561863 1.041383816 1.07108552 1.034316582 1.051108057 1.057699371 1.109315507 229589033 poba Pseudomonas fluorescens SBW25 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.087116627 1.040137314 1.013339295 1.069759711 1.074040354 1.090368514 1.02788472 1.03143607 1.041826381 1.078307272 1.108456539 1.019698353 1.022961141 1.032848891 0.992247658 1.057573414 1.097405941 1.066773743 119191930 glx Coccidioides immitis RS Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 0.85665292 0.819420113 0.895113188 0.792194673 0.83043085 0.862847452 0.826010216 0.797699841 0.863940891 0.862756489 261193797 endochitinase Ajellomyces dermatitidis SLH14081 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 0.793083436 0.889000794 0.817300423 0.879759816 0.832215732 0.823372584 0.841841749 0.814154075 0.79756105 0.8633988 0.849993907 0.863055851 0.810887365 0.830409772 229611208 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.833628535 0.792549821 0.839515113 0.878576156 0.865030633 0.790337799 0.896992375 0.891060162 0.83892342 0.807386864 0.819247811 0.868223335 0.837526431 380732338 chitinase Corallococcus coralloides DSM 2259 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 1.126723166 1.149882547 1.120814677 1.131172108 1.138288067 1.180229368 1.124945877 1.126386478 1.12391745 1.109838278 1.133942859 1.126155989 1.058975048 1.078412631 1.035108507 1.081960666 1.082035096 1.131853823 296170382 tfda Mycobacterium parascrofulaceum ATCC BAA-614 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 0.853285897 0.859901407 0.912543295 0.879418142 0.890050991 0.912452741 0.957701907 0.909977366 0.88064471 0.909849233 0.896838526 0.878395674 0.82246376 0.815486109 0.86302246 0.85413022 0.898319603 0.921952672 88861520 tehb Pseudoalteromonas tunicata D2 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 0.89783334 0.82955394 0.830765008 0.845348751 0.814083959 0.866364144 0.822643442 0.838987223 0.79341737 0.837892858 0.828851166 0.818025027 0.866642757 0.881540743 228558172 amyA Citrobacter youngae ATCC 29220 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 0.857245458 0.80739497 78184154 amyA Synechococcus sp. CC9902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.984813591 1.021439501 1.02227561 1.025718529 0.993560068 1.01301107 0.99397922 1.015089704 1.003544582 0.995163377 0.992860219 1.001341929 1.000930174 0.972285748 0.989740348 0.998684171 1.015523021 0.973095043 219921387 mer Laminaria digitata Metal Homeostasis Mercury Detoxification superkingdom:Eukaryota;phylum:Phaeophyceae;order:Laminariales;family:Laminariaceae;genus:Laminaria; 1.063053448 1.04195282 1.065453862 1.053886337 0.969314369 1.053209078 1.011321817 1.048165462 1.037678752 1.049982509 1.010228895 1.022831241 0.971093738 1.045059115 1.125551611 0.982034757 1.061887742 1.008775753 319945328 ppx Lautropia mirabilis ATCC 51599 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 1.272609809 1.24310848 1.24634851 1.279899162 1.217540887 1.252799526 1.222871905 1.247662043 1.252317388 1.230491965 1.219842086 1.269680388 1.211101541 1.199512225 1.205609462 1.226315255 1.25915964 1.246538308 260426115 nirb Citreicella sp. SE45 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 0.844620888 0.799907792 238784693 amyA Yersinia bercovieri ATCC 43970 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 0.892436613 0.872290703 0.896222363 0.894618689 0.856807659 0.888489963 0.877331422 0.915624285 0.92717105 0.909965277 0.877981917 0.88044193 0.779837131 0.857069338 0.79651507 0.811821641 0.840259644 0.856204712 87310833 Sir Blastopirellula marina DSM 3645 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 1.200306637 1.210452881 1.196063207 1.201016702 1.174759604 1.200069479 1.16210915 1.168778053 1.169665937 1.178208129 1.164295891 1.167868735 1.159274102 1.145935166 1.147049263 1.180830927 1.207201849 1.191920291 338167207 cysI Cupriavidus necator N-1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 1.128930981 1.046687165 0.988153978 1.081755913 1.021232719 1.010786159 1.029401448 1.052042572 1.050910944 0.979860288 0.954399268 1.043253376 0.962187631 0.957124377 0.87982544 0.955079604 1.080091214 1.070102898 225792037 ara Acidobacterium capsulatum ATCC 51196 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 1.126126339 1.068764461 1.052284613 1.029646471 1.003829585 1.057625617 0.990511962 1.029834845 1.04884515 1.044818927 1.030303394 1.067645394 0.986509819 1.039608465 0.990383867 1.01640628 1.048840885 1.07649686 168196171 tktA Methylobacterium sp. 4-46 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.097843891 1.074308372 1.102807413 1.107880989 1.123102042 1.102265694 1.144583561 1.117576979 1.118831529 1.108768429 1.112347293 1.129779489 1.102465324 1.060022249 1.091699026 1.084528699 1.136969691 1.082586929 298263912 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.82141565 0.816364368 150407360 nitrate_reductase Ajellomyces capsulatus NAm1 Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 1.018074575 0.991170881 1.017782591 1.033798277 0.982875976 1.008760412 0.985854496 1.048687748 1.032195205 0.981633506 0.990914276 0.987916228 0.9923499 0.957711639 1.064869315 1.006658932 1.014921158 1.008463252 403199218 bphc Gordonia rubripertincta NBRC 101908 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 1.12551591 1.121023534 1.143162979 1.116978418 1.077537913 1.130315782 1.100526584 1.102618578 1.109554345 1.145540689 1.13970675 1.142531667 1.099799149 1.088270751 1.084078338 1.085783888 1.128543544 1.126854284 295977755 FBP_aldolase Gluconacetobacter hansenii ATCC 23769 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 0.886659941 0.795546611 0.938318119 0.940330195 0.865918299 0.967496859 0.851426422 0.895068877 0.9122366 0.944192857 0.852848858 0.910307586 0.941344022 0.87780451 0.875771214 0.950788135 0.95790015 0.871352899 292655857 amyA Haloferax volcanii DS2 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 1.394160385 1.370823617 1.361530742 1.369718927 1.350725793 1.399546021 1.352951819 1.364161316 1.35668489 1.350451821 1.349442216 1.376073842 1.346879504 1.327094326 1.35069444 1.370343373 1.384748162 1.356899444 88779000 xyla Reinekea sp. MED297 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 0.816851718 0.859452236 0.846603669 0.899540173 0.893742426 0.814368036 0.925072549 0.869611127 0.903224112 0.881242329 0.824132551 0.910719591 0.826142609 0.863192287 0.850101577 0.864305984 170027473 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.881501205 0.851718838 0.813849461 0.827972885 0.802931543 0.782639301 0.833525327 0.920368668 0.850744204 0.824499516 0.780439321 0.863136175 270290267 fthfs Pediococcus acidilactici 7_4 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 0.940016454 0.859425395 0.933549884 0.915806088 0.973841773 0.822587441 0.819165276 1.024086212 0.969123798 0.84394068 0.854140932 1.003799281 0.923150411 0.846058706 0.911786553 0.914329486 0.91855091 0.919982127 227467104 tktA Roseovarius nubinhibens ISM Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 1.115794611 1.123201215 1.09187164 1.12371388 1.067623071 1.082971002 1.073668007 1.090345778 1.091450727 1.070336479 1.036827752 1.092773398 1.002467746 1.029023872 0.965018523 1.037511934 1.11797978 1.130567991 126470052 bphd Rhodococcus rhodochrous Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.826684913 1.080898623 0.962845372 0.821369876 0.813882916 0.815219262 0.852563216 0.823321456 0.872555455 359733662 tfth Rhodococcus pyridinivorans AK37 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.823049968 0.807497459 0.776577578 0.845383477 312197008 cysJ Frankia sp. EuI1c Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.947039382 0.953833544 0.918597828 0.91155695 0.871292354 0.938113281 0.90227174 0.908259183 0.934810836 0.93655996 0.870053297 0.881191583 0.886033168 0.879245997 0.818632103 0.889397689 0.914171898 0.947695172 257076073 fthfs Ferroplasma acidarmanus fer1 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Ferroplasmaceae;genus:Ferroplasma;species:Ferroplasma acidarmanus; 1.053986898 1.052760148 1.060593821 1.100870314 1.067803552 1.075887424 1.115762868 1.085586659 1.055518332 1.117892341 1.130596822 1.085920841 1.105383572 1.0470658 1.025525552 1.069925497 1.057245452 1.085281452 159466070 mg_chelatase Chlamydomonas reinhardtii Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 1.469733593 1.412135077 1.406747461 1.4272466 1.405992005 1.428137155 1.40001171 1.395213348 1.43036362 1.371428842 1.396482509 1.391258039 1.41256359 1.363943139 1.377914249 1.409885363 1.452189257 1.362797404 71383864 nasa uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 1.060978155 1.050555297 1.051784679 1.027815333 1.127317133 1.032458775 1.036207418 1.044831339 1.024030835 1.032903602 1.021201846 1.013078857 1.029763575 0.990790087 0.973073641 0.988145226 1.04800311 1.055141398 119898828 proO Azoarcus sp. BH72 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.81676139 0.830101443 0.872997904 0.845147775 0.821854793 0.874860301 0.854264705 0.81182591 0.917571854 0.916042409 0.993191868 0.890548811 0.925586192 0.863613242 0.856868065 0.954699266 0.8527449 0.903200096 288912732 endoglucanase Azospirillum sp. B510 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.295193374 1.290161344 1.299619366 1.273933808 1.268969059 1.338819823 1.234250574 1.231570948 1.245706321 1.235916459 1.238685546 1.237278001 1.225986455 1.21347634 1.193866235 1.231627733 1.31450029 1.277954434 345014849 ara Streptomyces violaceusniger Tu 4113 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 0.981257368 0.984311691 0.994604121 0.985515929 0.933572008 0.953672817 0.935542546 0.972048429 1.008008118 0.952812727 0.934564885 1.012115601 0.90591767 0.911441667 0.92427484 0.928284962 0.967092334 0.971639392 383791512 amyA Spirochaeta africana DSM 8902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 1.178716819 1.165405259 1.141421059 1.191382574 1.169351391 1.176181682 1.165424818 1.197148668 1.174117596 1.16008759 1.154210492 1.179335509 1.140964696 1.100127759 1.105308943 1.1460257 1.193980457 1.12740266 359738799 poba Saccharomonospora azurea SZMC 14600 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 1.29122407 1.23488157 1.269272426 1.237904569 1.21041409 1.15260578 1.116836611 1.184244643 1.250732807 1.226190632 1.236603837 1.254788048 1.208889644 1.193845347 1.178513209 1.159612524 1.270464734 1.225837307 76164999 amyA Chloroflexus aurantiacus J-10-fl Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 1.033048574 1.031008622 1.029404044 1.044361424 1.008418928 1.029718338 0.999333554 1.047930848 1.028767634 1.008892851 0.994551966 1.033419049 0.983279028 0.970252013 0.997791457 1.017047915 1.039049667 1.046806293 217400191 amyA Bifidobacterium gallicum DSM 20093 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 1.056665748 1.07276168 1.026554641 1.03071371 1.031760321 1.024855592 1.022031021 1.048495923 1.038583915 1.071004236 1.024648408 1.069790396 1.024835802 1.054138381 1.037463705 1.024096305 1.046395912 1.061031773 239905290 nrfa Desulfovibrio magneticus RS-1 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 1.143810198 1.088125838 1.094184066 1.126263771 1.110997906 1.111538042 1.093461503 1.116033088 1.095721903 1.088480569 1.092963392 1.148072358 1.065374929 1.055193631 1.041834083 1.080648385 1.123390329 1.085690116 1395175 bphc Pseudomonas sp. DJ-12 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria; 0.953447107 0.962177234 0.964523703 0.922625946 0.929270148 0.944155425 0.892495578 0.910229467 0.930344934 0.928519951 0.930961073 0.950128999 0.922304644 0.939111775 0.968295697 0.853561124 0.939500084 0.964015463 74038378 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.878725976 0.884325562 0.85735049 0.890695515 0.840257648 0.875326128 0.800536416 0.809218484 0.841732132 0.828713103 0.817927114 0.834228063 0.801445227 0.885015335 0.890486164 157912458 pgk Dinoroseobacter shibae DFL 12 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.931448582 0.905718253 0.876149156 0.885610383 0.874615318 0.923185662 0.895455 0.909104922 0.92977496 0.914845905 0.860751133 0.890154033 0.844607412 0.90357981 0.830665938 0.866982908 0.89460893 0.909560173 47572214 arsc Rubrivivax gelatinosus PM1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.095188433 1.062391692 1.032006381 1.092365927 1.038754004 1.117009092 1.040002305 1.050038025 1.077034642 1.03581622 1.046787958 1.075688613 1.048135043 0.98205043 1.028275035 1.049983575 1.101551346 1.056863852 388243314 amyA Haloferax mediterranei ATCC 33500 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 0.965839862 0.961002162 0.945482159 0.964859625 0.917404594 0.97964766 0.872541017 0.924539377 0.958485814 1.002351397 0.897509795 0.921555916 0.939844515 0.949815356 1.026360356 0.936130519 0.98597136 0.980015019 365893891 arsc Bradyrhizobium sp. STM 3843 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.875132314 0.867132585 0.90254827 0.938717053 0.912562606 0.880694792 0.916696548 0.912486894 0.898497789 0.902465313 0.884122019 0.906526658 0.844324223 0.807811639 0.815363088 0.888535184 0.844074521 94471099 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.182087914 1.147742138 1.171471302 1.198804044 1.168043032 1.230497748 1.179602189 1.18709653 1.178830398 1.181747116 1.183017057 1.187865316 1.15258105 1.136300762 1.134610666 1.139842203 1.191136435 1.170354239 170700678 linb Burkholderia ambifaria IOP40-10 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 0.831518777 0.873827278 0.805349214 0.826153343 0.804571604 0.810158324 0.798507348 0.816012393 0.914792392 0.874874238 0.820767225 0.775425293 0.860594658 3760223 pcpA Sphingobium chlorophenolicum Organic Remediation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 1.31850147 1.293692441 1.283301288 1.278729877 1.260239451 1.320904249 1.262230161 1.281767717 1.275488535 1.276229422 1.27008487 1.284226448 1.263435157 1.268367782 1.232898165 1.305823715 1.302290551 1.2777808 163736117 soxY Phaeobacter gallaeciensis BS107 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 0.814287364 0.786498971 0.826767167 0.798876157 0.812080874 323281987 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.837051087 0.825693348 0.842056088 0.835664293 0.807625145 0.807539765 0.853163177 0.844668975 0.845641003 0.826413467 295894785 nira Mycobacterium parascrofulaceum ATCC BAA-614 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.291999885 1.262348613 1.233409011 1.270139149 1.24456191 1.275705798 1.249062384 1.23809894 1.244107516 1.222815435 1.259787573 1.272922546 1.246998533 1.222068236 1.231883011 1.256027398 1.270842558 1.238209303 409439029 catb Rhizobium mesoamericanum STM3625 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium mesoamericanum; 0.913084124 0.871976017 0.919800276 0.932436641 0.897000704 0.877965321 0.887599518 0.908081485 0.934165339 0.89569942 0.933507839 0.860172258 0.86072929 0.862959798 0.83243759 0.850079969 0.898011663 0.897214626 356659324 one_ring_23diox Rhodococcus opacus PD630 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.901828009 0.956238864 0.871396197 0.9060132 0.846595993 0.866810347 0.85496472 0.901954604 0.908549771 0.91563237 0.828189653 0.897950628 0.811224784 0.930403 0.980660039 381361628 fccab Bradyrhizobium sp. S23321 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.85627782 0.907223079 0.886293067 0.930666467 0.886889999 0.962544423 0.852731708 0.877075952 0.878749782 0.887731817 0.911197562 0.894094015 0.840553639 0.825556522 0.872537753 0.844589515 0.897359924 0.904628511 258650523 atzb Nakamurella multipartita DSM 44233 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 1.404072845 1.377513243 1.392764022 1.388671323 1.376984269 1.400036211 1.381272407 1.400789805 1.352283767 1.34433979 1.402340477 1.41130387 1.346019293 1.333600644 1.32824106 1.364570657 1.385511922 1.345754098 372267730 chitinase Alteromonas sp. S89 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 0.837786822 0.857345837 319413995 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.956933485 0.828256408 0.945756795 0.966892248 0.905071696 0.989042932 0.91655918 0.899336127 0.899789745 0.891330364 0.904844765 0.895835409 0.890612482 0.917487802 0.854798152 0.884970449 0.912248598 0.85325526 88814640 arsc marine actinobacterium PHSC20C1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 0.802535231 0.800897683 0.808907712 0.809512784 0.77763455 110632060 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.861347956 0.875105323 0.919167815 0.877348957 0.933001506 0.925686778 0.900446535 0.884659092 0.893516772 0.913347841 0.873441628 0.862880326 0.842429924 0.867370919 0.847347405 0.853969623 0.920221824 0.852216545 260651277 ara Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.943516714 1.201601648 0.993738935 1.099891732 0.996644361 1.027195369 0.947189902 0.970684765 1.014143681 1.02690927 0.993142473 1.042445443 1.00282843 0.993037106 0.944309561 1.022427061 1.006360495 1.016096824 260433862 GAPDH_Calvin Silicibacter lacuscaerulensis ITI-1157 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 0.856976087 0.880474662 0.870846154 0.809959726 0.847447056 0.862344344 0.842494271 0.821107911 0.845529693 373548083 nitrilase Mycobacterium tusciae JS617 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.801961257 0.784740271 0.816524437 0.909934403 0.780864368 0.765569966 0.82394516 311278630 ccmL Enterobacter cloacae SCF1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 0.923435176 0.915024276 0.86973765 0.910731449 0.872155458 0.888019885 0.84626696 0.851198721 0.882357204 0.878683841 0.833552977 0.853362239 0.860293846 0.868381982 0.816697542 0.880285315 0.923476383 0.943512028 23429032 b_lactamase Aeromonas schubertii Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 0.886531574 0.876863233 0.851796282 0.893402284 0.875053924 0.821397065 0.808864568 0.855485875 0.852161713 0.861989501 0.823509935 0.854429806 288349213 limeh Frankia sp. EUN1f Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.850633347 0.906795344 0.844914271 0.886381658 0.852304391 0.856143588 0.891774932 0.895701907 0.869348676 0.876469553 0.837984269 0.906682022 0.826916625 0.827011107 0.813794392 0.900743042 0.889756391 375144118 chitinase Niastella koreensis GR20-10 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 0.962081682 0.966240903 0.930778593 0.954329785 0.94525934 1.005588526 0.925669442 1.045273105 0.964091029 0.984963888 0.949029788 0.950737708 1.002245344 1.001567876 0.909854354 0.97510385 0.959590832 0.952768534 402842215 pcag Klebsiella sp. OBRC7 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 1.097342141 1.087413022 1.083960598 1.099914993 1.10516268 1.120774843 1.079546644 1.066717134 1.061995972 1.078533866 1.082893912 1.075345285 1.071009173 1.040000345 1.12769082 1.05115054 1.09955359 1.072886522 1359486 xylanase Ascochyta pisi Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Didymellaceae;genus:Didymella; 0.857536948 0.862750071 0.876915458 0.88097078 0.842842045 0.828890954 0.850563568 0.869170998 0.828591174 0.806793602 0.793912048 0.853328753 0.86980429 0.854217771 0.854971975 299060366 poba Erwinia billingiae Eb661 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 0.824042695 0.782928905 0.785208552 0.832546133 334133472 phytase Paenibacillus sp. HGF7 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.852429626 0.87283759 0.886536537 0.826054116 0.947593944 0.852035746 0.82003894 0.850742758 0.857027721 0.960390736 0.870812739 0.860491638 0.860633371 116070689 Sir Synechococcus sp. BL107 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.85180763 0.805767763 0.852806523 0.831461687 0.824918373 0.904395552 0.865331965 0.847521671 0.80580563 0.853235353 0.832196023 0.817095073 0.789860542 0.929497283 0.890751328 116696225 cmci Ralstonia eutropha H16 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.898270594 0.944810906 0.891389073 0.916926784 0.90200584 0.881916224 0.855507802 0.862686427 0.904757467 0.878995197 0.893622807 0.864908628 0.914502384 0.837274346 0.83964142 0.886162971 0.918425585 0.907230853 344319237 badh Streptomyces sp. SirexAA-E Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.892670368 0.917231298 0.870339715 0.905300389 0.883100507 0.906550714 0.858059204 0.913368714 0.869952472 0.928724277 0.85066901 0.914551501 0.869014645 0.856501437 0.829734377 0.89530528 0.897271944 0.901007873 50952845 mnp Trametes versicolor Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 1.039455217 1.00807568 0.96987346 1.015739813 0.988873358 1.029854573 0.993825609 0.989218319 1.006263047 0.995064244 0.99646664 0.986669913 0.96881261 1.009000321 0.934074306 0.968550246 1.010016639 1.022973461 329847207 alkk Asticcacaulis biprosthecum C19 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.867606324 0.82555569 0.879649533 0.841006796 0.907163501 0.910587529 1.014490681 0.856314898 0.816197747 0.959857934 0.817712561 0.899266788 0.85879352 344340989 soxY Thiocapsa marina 5811 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 0.894258253 0.877848048 0.875147887 0.900542423 0.891407461 0.883057138 0.93182109 0.88464554 0.949598502 0.926184739 0.914889965 0.910738925 0.871493861 0.877609912 0.833885724 0.869541549 0.914233959 0.986033114 156058340 protease_aspartate_fungi Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.98293779 0.973419026 0.971122469 1.012331636 0.942437742 1.002500099 0.985692555 1.021901514 1.012442961 0.980227109 0.984130232 1.027780912 0.939675271 0.955452164 0.969419773 0.996310662 0.999440341 0.976959128 77383793 endochitinase Pseudomonas fluorescens PfO-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.886587105 0.898111286 0.804014179 0.878883701 0.860674786 0.853319897 0.857964969 0.877053126 0.832594358 0.851046915 0.813748475 0.892123078 0.909042469 116248770 tfdb Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.320445724 1.290116966 1.271900805 1.275033072 1.279959383 1.332413487 1.279177047 1.268509471 1.2539465 1.321066188 1.304520835 1.281530366 1.275314688 1.300357764 1.267951516 1.274598163 1.288716545 1.296648417 312444782 amyA Paludibacter propionicigenes WB4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Paludibacter;species:Paludibacter propionicigenes; 0.963202309 0.9625559 0.95014343 0.950117001 0.887377904 0.941726647 0.855244481 0.934034293 0.949491353 0.916783289 0.896702298 0.876551693 0.872324336 0.922811569 0.876272542 0.913537165 0.924944267 0.94224203 310643441 endoglucanase Paenibacillus polymyxa SC2 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 0.964238096 0.949220016 0.948572256 0.908458485 1.00235977 1.031951079 0.950815613 0.927436538 0.977303322 1.005418209 0.980474452 0.960235137 0.994876269 1.02906959 1.001872676 0.946443913 0.985883286 1.015711819 337744638 beta_agarase Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.821050139 0.809407735 0.781024355 0.801977795 0.816522896 0.833161998 0.816613554 0.837113847 0.828298116 0.808726709 0.832674675 335040375 CsoS1_CcmK Caldalkalibacillus thermarum TA2.A1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Caldalkalibacillus;species:Caldalkalibacillus thermarum; 0.806422745 0.802219013 0.839266843 0.811276395 0.785980269 0.839334668 294884123 aoxb bacterium enrichment culture clone aoxheteroA50_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.943831399 0.867217149 0.878569441 0.893356083 0.921725921 0.896289259 0.904238333 0.933147157 0.925053459 0.905684955 0.912045821 0.891755782 0.861549428 0.889203899 0.806585431 0.904322892 0.890335395 260891365 amyA Leptotrichia hofstadii F0254 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Leptotrichia;species:Leptotrichia hofstadii; 0.803315961 0.826646112 0.816318774 0.807816445 0.804367886 0.819790567 0.879442136 0.843953162 0.808074115 0.841417296 0.809761281 0.866877262 239833415 tktA Ochrobactrum intermedium LMG 3301 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 0.791465588 0.794553339 302893669 phospholipase_C_fungi Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.83800033 0.841613037 0.809946764 0.83342074 0.80907623 0.820591954 0.827854144 0.82892792 0.825737727 0.849868801 0.855613168 0.83804612 356882580 endoglucanase Azospirillum brasilense Sp245 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 0.77394994 0.798745571 2649214 arsc Archaeoglobus fulgidus DSM 4304 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 0.886676905 0.863468814 0.869949615 0.928898865 0.849366252 0.857378407 0.896615983 0.916861278 0.909921636 0.894589394 0.872948854 0.870155193 0.837244705 0.892080793 0.875188393 0.852205153 0.852258271 0.875245295 99083137 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.978419466 0.995721486 1.02087384 0.984440985 0.971449887 0.943421681 0.946642706 0.976423679 0.98078527 1.080019323 0.981945852 1.001687618 0.931361561 0.89822331 0.901789827 0.925277291 0.995450752 0.970170031 365748659 chitinase Enterobacter cloacae EcWSU1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 1.084857291 1.072696282 1.072292177 1.080013484 1.082044797 1.080609877 1.060564161 1.084872474 1.054611156 1.056808727 1.055364771 1.073424591 1.042855776 1.055455658 1.141381593 1.069834302 1.050774972 1.040434637 320010372 ppx Streptomyces flavogriseus ATCC 33331 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 0.943573706 0.935515475 0.88066094 0.974007625 0.947977332 0.963662255 0.906496803 0.890351923 0.930866515 0.927657343 0.93754761 0.919825428 0.901423982 0.876822601 0.81907964 0.904383349 0.95476006 0.973947858 27382608 dehh Bradyrhizobium japonicum USDA 110 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1.076146389 1.035024966 1.006726816 0.961638876 0.970381027 1.132485423 1.002420604 1.04157285 1.05726092 1.065057767 1.070726144 1.075388126 1.041115275 1.050103872 1.082729969 1.08825452 1.100720698 1.041483469 214036450 mer marine gamma proteobacterium HTCC2148 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.311013859 1.274874841 1.238521756 1.293606237 1.275730015 1.277929809 1.273846231 1.295012729 1.297220197 1.235238234 1.282119752 1.282113825 1.221292238 1.189775854 1.223070126 1.290658712 1.276335083 1.254318465 66801911 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.129056982 1.077410555 1.067284648 1.038012118 1.053469938 1.088337405 1.028679482 1.048447129 1.044908302 1.056247168 1.052575219 1.052583059 1.050099117 1.060061363 0.994346341 1.045006705 1.066547314 1.063515535 163261663 pgk Bordetella petrii Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 0.962564607 0.872407794 0.911500368 0.891506009 0.926383068 0.849602408 0.903780507 0.86636207 0.876738128 0.924134485 0.945424871 0.862802395 0.867128016 0.904689869 0.841259046 0.92722295 0.911905635 0.925050842 319977609 amyA Actinomyces sp. oral taxon 178 str. F0338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 1.168235831 1.157185906 1.194013211 1.175475993 1.133507322 1.233799819 1.066786014 1.117841721 1.162809179 1.15029414 1.158415221 1.137748596 1.131196245 1.089206191 1.090781627 1.108077701 1.210234664 1.140884528 148258671 ben_bcla Bradyrhizobium sp. BTAi1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.807891705 0.856685959 0.849191725 0.900096278 0.827852931 0.896699316 0.816546718 0.852154131 0.8885108 0.85257307 0.809113881 0.800679557 0.836614007 294084157 bphc Candidatus Puniceispirillum marinum IMCC1322 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 0.846793957 0.863666743 0.869032275 0.817422623 0.841576575 0.845781339 0.828595335 0.830586637 0.874471073 0.850122988 0.906231583 0.820808927 0.842313267 0.891522277 359764917 cellobiase Gordonia polyisoprenivorans NBRC 16320 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.948545131 0.959083849 0.878262891 0.950768329 0.882128527 0.940729496 0.881966752 0.848068993 0.932747629 0.901369861 0.868244834 0.897633986 0.866579733 0.877925914 0.866737438 0.903949319 0.973921463 0.96011653 60475992 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.807981986 0.82649788 0.786669233 0.791491592 0.813872765 398126307 cmci Pseudomonas sp. GM21 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.870669109 0.909896261 0.913173151 0.89853821 0.945296558 0.945962156 0.965737247 0.955405818 0.859519328 0.935911508 0.910741984 0.879436058 0.86145375 0.852018603 0.898472426 0.8733853 304393545 dehh109 Ahrensia sp. R2A130 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.984583915 0.99173297 1.015532311 0.986287632 0.995383322 1.020522368 0.955914318 1.009326663 0.988580461 0.993884603 1.009724996 0.993875436 0.992635439 1.001052778 0.983251035 1.010024657 1.005466708 1.01121847 154310781 cutinase Botryotinia fuckeliana B05.10 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 1.117044987 1.087871253 1.101041886 1.118706748 1.100436352 1.130692159 1.106120999 1.114432646 1.115199368 1.128547161 1.138894425 1.092930989 1.088672533 1.069937992 1.038644611 1.042559316 1.131337696 1.071310913 336010884 amyA Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.987709098 0.937416477 0.995268834 1.042089302 0.955145673 0.914248099 0.912770825 0.992285921 1.00811565 0.942127569 0.937331342 1.085452557 0.965149664 0.931528416 0.944780743 0.934902315 0.983740466 0.937915205 367471631 sqr Bradyrhizobium sp. ORS 285 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.985267036 0.974731718 0.947264736 0.994126029 0.935068371 0.991678597 0.97958989 0.985707944 0.977047716 0.98885661 0.931858415 0.992899827 0.906056042 0.939026778 0.862829307 0.87838125 0.963971026 1.003336826 392419847 amyA Pseudomonas stutzeri CCUG 29243 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.072203008 1.043095434 1.015286074 1.055414562 1.008174631 1.076334877 1.047861551 1.04920188 1.0703716 1.06204273 1.00165355 1.062108924 0.99901785 0.993277499 0.95495626 1.033593847 1.028033559 1.027541808 398337567 alkb Leptospira kmetyi serovar Malaysia str. Bejo-Iso9 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira kmetyi; 0.871801054 0.809127081 0.873997404 0.912002614 0.865555647 0.875170318 0.896052345 0.888681254 0.888386736 0.821796808 0.858425421 0.891699933 0.846188097 0.818358769 0.845850977 0.913365503 0.851052129 82618399 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.305237626 1.261937019 1.278684634 1.308542396 1.288837752 1.299243917 1.262605439 1.284092064 1.279319801 1.250479802 1.285698195 1.293781447 1.269598854 1.240264778 1.288951828 1.265270404 1.298036145 1.257110722 85669083 dehh109 Roseovarius sp. 217 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1.307043903 1.315240621 1.295173411 1.305426965 1.285928216 1.314555193 1.265065601 1.265164454 1.287210927 1.299004435 1.284762295 1.311164122 1.283231514 1.281456753 1.272320517 1.292012927 1.316384102 1.276449615 404387763 mdlb Turicella otitidis ATCC 51513 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;genus:Turicella;species:Turicella otitidis; 1.162898034 1.1989078 1.118480799 1.167788493 1.165148563 1.207351876 1.143495382 1.153432817 1.153690086 1.142309143 1.14851206 1.164066989 1.136554482 1.104029758 1.127603842 1.147133272 1.172992115 1.17946711 148260275 PRI Acidiphilium cryptum JF-5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 0.785536646 0.90411728 0.869001439 0.907900742 0.838006332 0.855850788 0.829293554 0.796091671 0.839812396 0.828259922 0.839318354 0.824910494 0.827203368 0.851673564 0.909587756 209486872 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.829706549 0.791167569 0.8217812 0.844299634 0.802343351 0.780988017 0.802777334 0.838069093 0.824220664 0.840670041 0.838375351 0.866472866 67919377 nifh Chlorobium limicola DSM 245 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 0.759602921 0.816739395 290960156 cellobiase Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.080878713 1.100186756 1.111769719 1.126459039 1.086525218 1.09226562 1.077873183 1.051276733 1.089351861 1.057015735 1.135541019 1.102734592 1.075020609 1.072679808 1.069736392 1.075630563 1.090335006 1.071879072 304407894 cysJ Paenibacillus curdlanolyticus YK9 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 0.837536185 0.873434635 0.820957025 0.799902432 0.808496114 0.814059394 0.874848985 262014340 protease_serine_fungi Arthrobotrys oligospora Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Orbilia; 1.371344358 1.315818003 1.301853774 1.34812869 1.279109176 1.357031866 1.300753644 1.316392467 1.313315203 1.265173178 1.314200431 1.292138985 1.286728797 1.26234774 1.24973425 1.294576754 1.362190665 1.262602034 151302256 APS_AprB Desulfofrigus sp. HRS-La3x Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfofrigus; 0.841415533 0.786888209 0.78886551 0.802681065 336301555 rgl Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.982759211 1.04403223 1.008759566 0.974390114 1.031156268 1.037185596 0.98837504 1.005104775 0.987411878 1.020909938 1.010959169 1.019864921 0.992626891 1.032154109 0.971030525 0.97945674 0.992572439 1.024668973 198265763 dehh109 Octadecabacter arcticus 238 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 0.888435339 0.790690217 0.904110095 0.896046482 0.812604275 0.838331305 0.878330895 0.888080909 0.826844287 422314263 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.102983076 1.11469059 1.089251479 1.100379266 1.098220561 1.1127482 1.081886618 1.06031472 1.1087957 1.066761183 1.076418184 1.072963914 1.00200989 1.058133143 1.019507696 1.022288804 1.099953217 1.118015524 9105753 acetylglucosaminidase Xylella fastidiosa 9a5c Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 0.908411761 0.856474564 0.858584039 0.935337559 0.797965482 0.868716323 0.831514315 0.843519039 0.989865864 0.845067546 0.836739975 0.865219755 0.862789692 0.834020611 0.851935442 0.877588784 0.881510075 150964443 pcpe Pseudomonas aeruginosa PA7 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.96229376 0.965206913 0.910646821 0.940102146 0.921575659 0.983018662 0.942354607 0.934834921 0.919874363 0.92572044 0.931877116 0.939208355 0.926162841 0.961936561 0.92048468 0.943380351 0.949862694 0.952199443 134142983 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.802292965 0.884122623 0.830747669 0.897895246 0.862379509 0.826228936 0.804296989 0.837860826 0.903475277 0.827602818 0.872299903 0.808560514 0.818806481 0.780829752 0.875627191 387968498 narg Pseudomonas stutzeri TS44 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 0.880047864 0.804521341 0.806603365 0.86494934 0.801759439 0.834559758 0.843710363 0.866946758 0.821135052 0.85409186 110825038 chne Rhodococcus sp. RHA1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.845511754 0.822225075 0.884830967 0.821116728 0.813204713 0.860906313 0.834282946 0.797069075 0.836879091 0.871075554 0.850209322 302408527 cutinase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.885863145 0.809239048 0.889279719 0.810516983 0.846708114 0.828662005 0.861021559 0.851138637 0.869492602 0.846296621 0.869758479 0.834105541 0.849005763 295835788 atza Streptomyces sp. SPB74 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.283521903 1.115109898 1.205760574 1.219350049 1.084914808 1.176539047 1.193397413 1.242658993 1.263333408 1.182439671 1.143211045 1.138751419 1.159426734 1.181653043 1.175090502 1.179692314 1.257823625 1.228106766 115397631 phenol_oxidase Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.913218207 0.946249503 1.013203652 0.978400598 0.953501826 1.008133185 0.972664057 0.954648235 0.969487497 0.973241524 1.067593439 0.939475881 0.905876374 0.902274178 0.937602134 1.019961654 1.014316424 0.925745018 388538481 arsc Advenella kashmirensis WT001 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 0.76850579 0.807369774 0.799112691 0.802442147 197362907 dmsa Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.817547024 0.823949299 0.787552453 0.811132454 0.82801607 0.831005208 0.845579343 353344424 amyA Rothia mucilaginosa M508 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 1.249283834 1.241939855 1.205953123 1.246897982 1.210619642 1.247717365 1.203639955 1.209770667 1.215763664 1.188517924 1.190256783 1.212597034 1.194765966 1.189598245 1.186314531 1.210098489 1.240280973 1.191065929 326635602 phytase Pseudomonas sp. 206 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.842592558 0.863112289 0.862510874 0.883157015 0.872443329 0.809182029 0.851925332 0.836924697 0.841379592 0.79685377 0.826005714 0.768723264 0.814252804 0.810974614 0.840122486 0.859460951 23491547 catechol Burkholderia sp. TH2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.914457402 0.879216427 0.845222778 0.873652175 0.827494208 0.793880011 0.831101656 0.860941824 0.841850302 0.836391584 0.870792135 0.821039823 0.879290097 301318948 ccmL Olsenella uli DSM 7084 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 1.068692793 0.948937379 1.02108015 1.041580726 1.02300491 0.997012299 1.031619157 1.046809996 1.036968854 1.015280153 1.159411409 1.041075177 1.002193968 0.992487689 0.93008862 0.977179048 0.984774831 0.957351098 162072856 dsrB Thiocapsa marina Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 0.918122023 0.846123624 0.805385174 0.886915533 0.846369832 0.864632922 0.852370681 0.840431685 0.805599432 0.845017387 0.900762555 0.863086172 124267321 PRI Methylibium petroleiphilum PM1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.228063518 1.183524551 1.196111132 1.216507204 1.197479484 1.222795756 1.208241967 1.216784119 1.197266625 1.183597439 1.182448004 1.217150064 1.173766166 1.162619984 1.137534782 1.184274813 1.217721322 1.187336752 170122677 cueo Escherichia albertii TW07627 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 1.036713106 1.081048668 1.071447868 1.009199331 1.078363979 1.053453274 1.025236801 1.032922177 1.04958767 1.059278809 1.122832441 1.055296293 1.051123187 1.11188677 1.060011746 1.014585601 1.038323647 1.047691312 348661162 ppk Propionibacterium avidum ATCC 25577 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 0.988069466 1.002528219 0.971724765 0.982175849 0.951723772 0.972697657 0.931759077 0.973820646 0.969731421 0.961057664 1.006509615 0.966206151 0.884214088 0.938468136 0.832709408 0.917456925 0.961095272 1.024473354 49612434 nitro Erwinia carotovora subsp. atroseptica SCRI1043 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 0.831828208 0.798753085 0.807254577 0.834066993 0.832155577 0.836613777 0.84512056 295411260 B_lactamase_A Kyrpidia tusciae DSM 2912 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 1.288938629 1.273104337 1.264239357 1.269136968 1.258484884 1.2960843 1.265036464 1.275240278 1.247659682 1.253063333 1.250065373 1.251778616 1.238386453 1.20337714 1.197683307 1.218049888 1.271491948 1.250405453 356661103 cutinase Rhodococcus opacus PD630 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.971288226 0.95044019 0.951759354 0.991923161 0.979669432 0.958694992 0.981235575 1.005087849 0.968522461 0.993067886 0.972802691 0.98880065 0.940766579 0.952861137 0.878153796 0.897166659 0.99470856 0.97167592 18076027 metc Pseudomonas sp. Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria; 1.04824683 1.003629124 1.017573169 1.067495381 1.014601465 1.026544716 1.021293095 1.078965387 1.051029787 0.996831992 1.006044647 1.025444808 0.970785648 0.93325773 0.966891429 0.981434162 1.042269953 1.00006125 158312294 xylanase Frankia sp. EAN1pec Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.955277925 0.959987231 0.924261644 0.94239563 0.941372438 0.945737309 0.886552175 0.906222679 0.898881025 0.936528418 0.947769907 0.899344991 0.918634075 0.90147406 0.918452134 0.921962006 0.989507874 0.966032277 188990400 cysJ Xanthomonas campestris pv. campestris str. B100 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 1.175302326 1.175443517 1.17896476 1.167545492 1.165008438 1.203399546 1.113040659 1.115083111 1.169332285 1.17693202 1.254777064 1.193683371 1.147538658 1.114767724 1.132402915 1.166325886 1.176695316 1.176412488 217504649 exaa(moxf) Methylocella silvestris BL2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 0.84633837 0.846280716 0.871114703 0.845047096 0.862865217 0.873973398 0.835728664 0.842226521 0.842996786 0.838618908 0.8665495 0.825041995 374584729 arsm Leptonema illini DSM 21528 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 1.10894874 1.09561756 1.087273071 1.076577981 1.079533112 1.103839941 1.068077379 1.070285314 1.096484559 1.089894649 1.089447896 1.113728087 1.048663668 1.070501269 1.073410989 1.085139505 1.107815067 1.10915025 21435824 urec Streptococcus alactolyticus Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 0.817666029 0.900715937 0.915305908 0.840876452 0.782295285 0.799947145 0.802233331 46850218 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.609973938 1.554826805 1.53964171 1.550351341 1.5195259 1.551116985 1.508343282 1.540252965 1.544448472 1.523027599 1.529073377 1.553632416 1.493337129 1.502965351 1.502145882 1.51206316 1.54768636 1.507943767 111022620 arsc Rhodococcus sp. RHA1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.035189177 1.022370359 0.993025391 1.052305308 1.016232987 1.021739442 1.016378627 1.026880386 1.097918989 1.000600935 0.989363194 1.016562197 0.986569191 0.969386413 0.927250449 0.962118771 1.015431488 1.013827817 237858235 GAPDH_Parabasalia Joenina pulchella Other Phylogenetic NA superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Joenina; 0.878372475 0.933871071 0.81933561 0.920724222 0.900250407 0.917411942 0.829623539 0.852932468 0.865388117 0.868232876 0.841476774 0.885206381 0.811131431 0.849478308 0.869060638 0.881417548 0.950749382 0.942406971 260866065 dsra Ammonifex degensii KC4 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 0.906577089 0.921411252 0.899883058 0.931260203 0.916718786 0.93538663 0.903846135 0.935116497 0.933520009 0.932972692 0.868261544 0.905470978 0.881476924 0.941160871 0.942615404 0.906537367 0.928654838 0.977645484 355525508 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.978650627 1.024083431 0.990465872 0.970062615 1.040147577 0.974970553 1.030651072 0.878152825 0.965481166 1.037802324 1.04947373 0.970674206 0.987294155 1.035325947 0.920485699 0.948272938 1.001540296 1.018168372 388432429 xyla Rhodanobacter fulvus Jip2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 1.174238506 1.164543379 1.183543742 1.158024265 1.151166848 1.207654768 1.135531889 1.134090415 1.147653212 1.123705891 1.126434071 1.136418674 1.147347061 1.126272796 1.09471205 1.11778572 1.160451949 1.1887601 261868897 mannanase Flammeovirga yaeyamensis Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Flammeovirgaceae;genus:Flammeovirga; 0.861694056 0.911821026 0.88116814 0.890160766 0.837095764 0.867835929 0.906411057 0.806464215 0.884133901 0.907040235 0.859938224 0.80511335 0.929353439 0.832064128 0.86006093 70988747 ara Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 0.846875786 0.872833909 0.936943605 0.907847762 0.880145321 0.834736398 0.821200697 0.834824484 0.866312607 0.844938279 0.828747416 0.873745296 0.902881629 0.841834876 355376607 amyA Selenomonas noxia F0398 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 0.818443209 0.857951961 0.805422082 0.829774116 316944975 aps_apra Desulfovibrio aespoeensis Aspo-2 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 0.986204759 1.011089262 0.979792884 0.970325326 1.020832381 1.021813847 0.984979367 0.956622649 0.971508985 0.986968523 1.02536767 0.996815612 1.014696732 1.00232717 1.122766196 0.957567313 1.029146137 1.030212809 117999993 ophc Comamonas testosteroni KF-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.960989646 0.937226217 0.886299056 0.929647383 0.898410745 0.950070576 0.855977295 0.859109862 0.918738544 0.8245019 0.854296386 0.936922387 0.887289876 0.893056581 0.915980975 0.903324406 0.944470174 0.932771187 373875342 amyA Leptonema illini DSM 21528 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 0.981339238 0.955969795 0.936218186 0.994927715 0.8981523 0.985810823 0.886214112 0.903007979 0.941010623 1.006640124 0.948269854 0.917359892 0.863671634 0.939141724 0.860597016 0.883226412 0.959332258 0.970657511 73762890 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.975957528 1.034477941 0.996934651 1.008348256 1.008146533 1.003533972 0.986190219 1.006850453 1.021068157 1.0148232 0.993138995 1.02393464 0.976192288 1.033216614 0.965530282 1.002161024 0.998674653 1.01182579 363984515 CsoS1_CcmK Thermanaerovibrio velox DSM 12556 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio velox; 0.800850715 0.758779722 162568577 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.944836933 0.941414623 0.962383132 1.029139233 0.892309922 0.936883332 0.901579316 0.964315398 0.967041134 0.94799788 0.890873056 0.905085061 0.816274836 0.872206031 0.878056043 0.869681349 0.938638331 0.93498466 357405128 urec Methylomicrobium alcaliphilum Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 1.094142452 1.049472739 1.053731942 1.075350864 1.062934102 1.041999593 1.065244268 1.059454285 1.053719165 1.030055672 0.969822419 1.02548015 0.988401343 0.975331128 0.971422335 0.96981185 1.054559516 1.052258856 284448105 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.741819821 0.804526294 0.837158726 0.827176899 0.83687535 0.813665534 0.7907285 387502969 amyA Propionibacterium acnes 6609 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 0.851499629 0.837096823 0.877633827 0.849776615 0.896135022 0.814235557 0.855733136 0.849421427 0.809278638 0.818622265 0.818744082 0.907640911 223886535 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.996596588 1.011566151 1.100519009 1.024329596 1.020010183 1.010027579 1.009467476 1.006708986 1.009894821 0.999460934 0.996586785 0.974226469 0.955874432 0.986489588 0.965686049 0.943443221 0.991253566 0.984332462 110350788 nirk Nisaea denitrificans Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Nisaea; 0.785176699 0.796555507 0.811505748 0.769439606 0.817938369 0.781010534 118029371 catechol Burkholderia phymatum STM815 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.009370494 0.988825492 0.952837273 1.009795762 0.986568931 0.991330491 0.966178674 0.983694577 0.999534271 0.978003299 0.984934952 0.998635455 0.9326348 0.928612871 0.931819723 0.936748682 1.007558473 0.997909844 365972455 nirb Enterobacter cloacae EcWSU1 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 1.158636998 1.130466701 1.151212652 1.143953123 1.107887667 1.139098978 1.101160045 1.106679878 1.13225384 1.084740014 1.072837172 1.105050657 1.078600332 1.047532663 1.092186183 1.08770899 1.158853367 1.108538136 90954563 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.897811401 0.885399033 0.877178711 0.931157941 0.99792735 0.876723004 0.888087525 0.857915142 0.908393402 0.841458056 0.875662552 1.031932099 0.885001852 0.847978612 0.844432901 0.916013453 0.881733661 291582265 TIM Nitrosococcus halophilus Nc4 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 0.927163661 0.90802445 0.944572048 0.961837749 0.86720929 0.924766252 0.90732709 0.941400537 0.922797955 0.940741741 0.99209083 0.952935627 0.861539597 0.889472532 0.869782461 0.893295843 0.918499875 0.931813095 288352045 tfda Frankia sp. EUN1f Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.858801336 0.799820501 0.868476259 0.863415498 0.868386251 0.867128243 0.836888988 0.877946908 0.851802747 0.849113717 0.84168431 0.871499863 0.824122498 153889031 dehh109 Ralstonia pickettii 12D Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.987600047 0.985087219 0.999126409 1.007673678 0.979906727 0.995881327 0.972578687 0.976004209 0.994020174 1.052000535 0.996939564 0.998032733 0.994544936 0.952157588 0.928940755 0.960390851 1.018239067 1.025577163 403722799 badh Gordonia rhizosphera NBRC 16068 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 1.116353365 1.073504304 1.107907479 1.117457742 1.110282165 1.100354589 1.09467482 1.072582328 1.120316665 1.096548133 1.106434544 1.128065478 1.037160464 1.0627544 1.061595376 1.037438961 1.0827638 1.033307556 385763664 dsra uncultured bacterium ws156A7 Sulfur sulfite reduction NA superkingdom:Bacteria; 0.780720903 0.803896699 0.820360625 0.801368366 0.793191525 0.836694597 346918938 PRK Azospirillum amazonense Y2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 0.982579877 1.019016326 1.011188158 0.983004386 1.005481388 1.000531188 1.005446381 0.9914417 0.996412102 1.053327105 1.068237761 1.031660772 0.987483853 0.966514107 0.929472644 0.993461932 1.004307697 1.028769133 260402705 atza Dialister invisus DSM 15470 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Dialister;species:Dialister invisus; 0.885111864 0.845998968 0.913401536 0.935840533 0.829210147 0.864230166 0.848406444 0.897333259 0.872033253 0.843086383 0.897644215 0.932910212 0.826105337 0.831404837 0.868283894 0.865450523 0.872124837 0.863648901 196482314 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.770336 0.838553608 0.787982224 0.862613988 0.806316775 0.820303509 0.791651176 0.836253348 0.861415419 0.811118678 0.845606496 0.852003932 126627815 phn Marinobacter sp. ELB17 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 0.784150269 0.858064725 0.776465558 0.769583345 0.79859213 193244833 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.235090258 1.22318767 1.226957729 1.243831296 1.223107738 1.212600391 1.198099924 1.232004406 1.249228638 1.211266722 1.211450925 1.229582046 1.190338884 1.166497158 1.161347772 1.164622978 1.228792233 1.228702917 254440258 tktA Octadecabacter antarcticus 307 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 1.135423888 1.102491283 1.132872914 1.178949708 1.14168889 1.130537671 1.12345345 1.156883782 1.137900369 1.103111767 1.132391639 1.129637153 1.127559323 1.088396711 1.120310666 1.121867622 1.150232075 1.096637046 116626300 ara Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.881500835 0.82132392 0.830989672 0.842789995 0.79410998 0.879620848 0.822109112 0.827839442 0.8635238 0.868654845 344690092 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.916035376 0.909918734 0.903018768 0.944608068 0.881110195 0.889515053 0.884282984 0.967186263 0.956750516 0.916973816 0.877091016 0.939334094 0.865751538 0.892946319 0.858133312 0.891104308 0.928476687 0.938343533 329119753 tehb Neisseria bacilliformis ATCC BAA-1200 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 1.456210263 1.436970463 1.411521694 1.436434662 1.405245958 1.449521273 1.399023735 1.403536797 1.390488849 1.396452885 1.402553962 1.408225394 1.39866124 1.376789199 1.38740411 1.414656471 1.447552764 1.392024261 225574173 amyA Blautia hydrogenotrophica DSM 10507 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 0.893704111 0.935674777 0.91167773 0.900675746 0.922435305 0.869042559 0.941369466 0.937693167 0.900151349 0.916699092 0.899504846 0.904414215 0.941109326 0.866178683 0.889847773 0.852262123 0.934695886 0.927081406 3660499 xylanase Claviceps purpurea Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Claviceps; 0.816980907 0.809068934 0.810437604 334137642 nirb Paenibacillus sp. HGF7 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.864106308 0.866696876 0.815844922 0.879500706 0.826339332 0.84223119 0.81122937 1.139099517 0.833206541 0.877517728 0.900052266 320091793 rubisco gamma proteobacterium BW-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.166482281 1.119046608 1.115034936 1.132079922 1.122913028 1.121623986 1.144963333 1.123142116 1.10947954 1.115825925 1.121388137 1.128898928 1.089219947 1.059820437 1.058850953 1.08076467 1.103905713 1.11831114 145357127 actin_Viridiplantae Ostreococcus lucimarinus CCE9901 Other Phylogenetic NA NA 1.156232852 1.135955452 1.110596844 1.172979068 1.11820202 1.173348552 1.126096763 1.15894938 1.15210391 1.139413449 1.138035145 1.168813948 1.121696185 1.13340036 1.138458255 1.145326683 1.160916137 1.108497095 170027493 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 1.376283227 1.373192434 1.346548863 1.35758863 1.36558781 1.415123942 1.360980934 1.343654243 1.343618359 1.387331703 1.372900431 1.363948375 1.332215073 1.325810413 1.289350628 1.342077949 1.371234511 1.351202 152988445 nosz Pseudomonas aeruginosa PA7 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.838095738 0.859176576 0.882243986 0.87134183 0.801101223 0.790713756 0.808855847 0.83776405 0.814301069 0.890265887 0.918740477 387889647 gdh Escherichia blattae DSM 4481 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 0.901204504 0.909210834 0.823874917 0.915200795 0.86160304 0.84550539 0.840504777 0.822149461 0.869014489 0.871956828 0.835285479 0.873945876 0.824758721 0.909709782 0.887164429 315001900 aoxb uncultured alpha proteobacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.30177505 1.26804241 1.250208435 1.267726995 1.238175911 1.283316953 1.254717304 1.250565694 1.261850756 1.238455676 1.259365265 1.258663251 1.259392932 1.199346001 1.231457903 1.235053842 1.292455463 1.251596093 358639813 tktA Azoarcus sp. KH32C Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.227920985 1.205180012 1.187148722 1.215020923 1.155437047 1.214179283 1.169367725 1.208928916 1.198134024 1.190667331 1.182902109 1.214090357 1.175109878 1.180660301 1.166953491 1.182953511 1.219870409 1.204597806 374606499 fosb Paenibacillus dendritiformis C454 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 1.025899379 1.00517451 1.057015786 1.010689808 0.985408517 1.032560886 0.993532801 0.947083564 0.964560208 0.98610047 1.079155654 0.970632409 0.945749583 0.961348336 0.958721245 0.980068282 1.004937096 0.99629724 54016003 urec Nocardia farcinica IFM 10152 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 1.311071171 1.330350515 1.306958031 1.299640261 1.315901447 1.31177997 1.278294958 1.272670804 1.273935394 1.306907154 1.293748275 1.302093595 1.284336252 1.29854578 1.284012436 1.27437557 1.325520401 1.308493897 116061987 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.908113 0.924424371 0.924091883 0.925889138 0.957184146 0.933690135 0.969580623 0.922726682 0.946790114 0.936847995 0.977918852 0.982703884 0.924052702 0.888461911 0.937771959 0.907341774 0.933204446 0.912889163 294472473 ara Prevotella ruminicola 23 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 0.978381147 0.9722269 0.979720968 0.964896457 1.016238716 0.987918174 0.992557258 0.975968166 0.908425823 1.00867243 1.011333481 0.984260508 1.020923328 0.993815405 0.931566162 0.926301691 0.981567151 0.997396627 358385925 dehh109 Trichoderma virens Gv29-8 Organic Remediation Chlorinated solvents NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma virens; 0.969637614 0.980914157 0.963061284 0.972480793 0.950387298 0.984024962 0.95045894 0.943827551 0.980539494 0.950495795 0.973468336 0.954122192 0.929912385 0.969571271 0.961336353 0.941455953 0.970196601 0.983162163 261345041 ccmL Providencia rustigianii DSM 4541 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 0.765687813 0.811402034 0.804897688 0.85085763 0.782034399 0.86852106 0.830582063 0.844812745 0.805710816 0.810238189 0.826140773 0.805838807 1.003230696 0.872019041 0.848719894 206566527 arsc Klebsiella pneumoniae 342 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.895240549 0.922490403 0.92293216 0.898831216 0.888490311 0.967593962 0.86616813 0.871917494 0.89097118 0.979119347 0.919976726 0.90125775 0.88253133 1.016985258 0.946184167 0.892179165 0.943042169 0.932047738 218458458 pula Rhizobium etli Kim 5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.994259706 1.017380255 0.96076605 0.994099168 1.00766152 0.983653834 0.958315592 0.955375522 1.013913388 0.983798494 1.011193941 1.014515721 0.945816974 0.949064321 0.991368081 0.953397973 0.979458065 0.987938557 308226450 linb Oscillochloris trichoides DG6 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 1.035080043 0.977746211 1.066313473 1.093661726 0.994824882 0.972820491 1.053313489 1.179970488 1.016813261 1.017184478 1.096087197 1.113269407 1.012590589 0.983494805 0.969772925 1.023521023 1.02750648 0.993583667 163258286 pcag Bordetella petrii Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 1.367657765 1.356364769 1.334524392 1.32891379 1.30658394 1.375367435 1.314661904 1.329162958 1.313411384 1.31123436 1.329206913 1.331735332 1.29230981 1.310081551 1.301316749 1.32872518 1.348294984 1.3252472 383781672 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.128749837 1.130993945 1.092453727 1.097245986 1.087670187 1.146192988 1.057952606 1.107899803 1.076099461 1.121331537 1.059190879 1.088338591 1.046895475 1.086870732 1.031437229 1.077504364 1.105923724 1.139462142 83727244 phn Ralstonia solanacearum UW551 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 0.907085004 0.91816663 0.896080229 0.954232473 0.893974371 0.906469741 0.93919949 0.919775105 0.901231225 0.892276925 0.91425541 0.934768959 0.808910406 0.825703288 0.886272834 0.868754127 384220656 chnb Bradyrhizobium japonicum USDA 6 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.97889706 0.996511997 0.9679293 0.961153092 0.948601304 0.966367883 0.96126596 0.96435101 0.964757659 0.93472103 0.966187774 0.966841804 0.919011782 0.89418857 0.890305614 0.924569194 0.987427857 0.998538059 323273830 amyA Microbacterium testaceum StLB037 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 1.061958338 1.056703895 1.041680334 1.048036582 1.016581371 1.075777468 0.995496936 1.019937145 1.031915845 1.049184956 1.041234938 1.014301992 1.022028591 1.002047244 0.98700801 1.03343594 1.066842565 1.050681459 226363705 mhpa Rhodococcus opacus B4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.824249499 0.790827517 0.826416849 0.808299465 121705728 endochitinase Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.931487552 0.899704054 0.908028248 0.960619022 0.942824732 0.894855597 1.037190256 1.004748222 0.966007627 0.937836549 0.932353765 0.947845956 0.90636809 0.886587167 0.894970632 0.934367908 0.921503481 0.933261121 149783065 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.94684145 0.91744228 0.893279025 0.896994758 0.889168654 0.887136267 0.851592171 0.859655125 0.861371449 0.888532101 0.877856405 0.87705742 0.901968598 0.811271007 0.83374556 0.935478813 0.917425288 146191528 FBPase Bradyrhizobium sp. ORS 278 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.840661414 0.816933091 0.806681807 0.809932087 0.842665199 0.864538363 0.828342105 0.809148099 0.810765308 0.863506204 0.842131848 0.846037629 0.825119301 0.903585121 0.887416987 0.816836958 0.896503229 0.900463264 115400958 lactase_fungi Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.91953674 0.909372885 0.919709017 0.967539841 0.932330376 0.913710786 0.918983034 0.926740049 0.956956075 0.855028716 0.899695716 0.945682985 0.915883025 0.863291482 0.90824251 0.887247527 0.955084766 0.902299086 182412827 acetylglucosaminidase Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.82659469 0.805304653 0.804676659 0.838785198 0.827819021 0.801621643 0.829856326 0.821277209 0.876782966 0.830178475 0.84610259 0.804024826 0.786034555 0.837557664 0.824286184 71906990 cara Dechloromonas aromatica RCB Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 0.829784254 0.800228116 0.888987335 0.830786734 0.824566754 0.852695612 0.878970325 0.839144918 146338092 arylest Bradyrhizobium sp. ORS278 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.17984353 1.183916488 1.161317063 1.213306455 1.148310216 1.176527293 1.165704617 1.189875501 1.183191944 1.167825205 1.131982762 1.175558255 1.140322478 1.132360308 1.151857516 1.159936802 1.176039581 1.17145777 32895106 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.109832988 1.122587526 1.118749674 1.186029367 1.12547118 1.125660677 1.106808773 1.163379233 1.161558249 1.166968746 1.102550986 1.159840522 1.107541293 1.089068449 1.106451729 1.121652352 1.159089495 1.160531574 321161571 amyA Granulicella tundricola MP5ACTX9 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 1.535278318 1.512288692 1.527635309 1.494973018 1.512370633 1.533094264 1.486653599 1.528835773 1.489541706 1.499597516 1.505074764 1.521246712 1.485776806 1.48656033 1.53179502 1.509855022 1.494645902 1.48359259 237878758 xylc Burkholderia glumae BGR1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 1.122054854 1.068668061 1.093197478 1.159605804 1.064399524 1.052991102 1.065751968 1.089582854 1.108966791 1.059464494 1.091844679 1.108031475 1.065027034 1.024007605 1.050271493 1.093583238 1.110476543 1.06484664 116620221 RgaE Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.002777281 1.027741619 1.000608858 1.019387322 0.97463773 1.020666721 0.992683 0.975889352 1.01534248 1.038369731 0.993011028 0.996193567 0.999779169 1.031388316 1.007401826 0.997533416 1.022536924 1.024596498 38488532 bphc Pseudomonas graminis Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.830819751 0.784273056 0.816730724 0.827223048 0.899376548 0.821435735 0.882923943 0.846046044 0.829217748 0.812563938 0.817437936 0.780950155 6491822 mer Streptomyces coelicolor A3(2) Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.469699723 1.432199831 1.43899232 1.429095813 1.405751647 1.484651185 1.398966952 1.418106313 1.415299585 1.406617664 1.420244938 1.406821552 1.396351892 1.396758404 1.370096004 1.407516599 1.44493283 1.430450973 385866914 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.927888471 0.947793936 0.907317237 0.953413872 0.877713332 0.874931348 0.881963982 0.925040207 0.932813227 0.922025508 0.880682467 0.895254451 0.841614781 0.846292676 0.856535429 0.946426215 0.958254848 375081626 phytase Paenibacillus sp. Aloe-11 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.997764918 0.999817064 0.9327471 0.953694928 0.980858492 0.955364007 0.949165296 0.933977136 0.96163618 0.96032736 0.997798158 0.947541617 0.953635438 0.912111467 0.837827651 0.961763842 0.972825781 0.951622781 334132837 catechol_b Methyloversatilis universalis FAM5 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 1.284551121 1.276508305 1.295662325 1.307964358 1.285825787 1.263340221 1.275220008 1.267065565 1.268689447 1.296677492 1.296036805 1.320939966 1.248480043 1.247384316 1.266111047 1.259047435 1.231582489 1.249224399 338823703 b_lactamase Agrobacterium tumefaciens F2 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.859501591 0.788421143 0.870511649 0.798869643 0.806781123 0.841644418 0.832945516 0.863859982 0.845419314 296138350 pcag Tsukamurella paurometabola DSM 20162 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 1.207295845 1.182539807 1.19286961 1.210645171 1.195376458 1.21361638 1.20281191 1.226302412 1.192848936 1.170569288 1.195224088 1.214732386 1.212771064 1.16100412 1.157055335 1.187252956 1.217961059 1.168507848 367472666 catechol Bradyrhizobium sp. ORS 285 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.909963545 0.92335819 0.873595278 0.888623333 0.911255179 0.863963302 0.875702022 0.873442006 0.848434469 0.886293577 0.819237441 0.859958681 0.848863166 0.858628208 0.830061153 0.905867812 0.947975226 46308010 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.837063006 0.810812003 0.814618819 0.861236199 0.808194754 0.831569256 0.826726161 0.834902962 147848730 ppx Synechococcus sp. WH 7803 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.07659501 1.098718453 1.056490099 1.053520373 1.069309048 1.097341524 1.066699512 1.073866157 1.037852223 1.07190953 1.046211262 1.06263335 1.033047429 1.057043237 0.988549875 1.044236573 1.059844523 1.077719176 359145569 xylc Streptomyces sp. S4 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.016789529 1.113097771 1.037236517 1.023642872 1.037361373 1.101609097 0.985608725 1.026903654 0.951333189 1.022624835 0.979454323 1.008591314 1.004629285 1.027641337 1.005547657 0.993045851 1.025861296 1.100371575 83726398 nahf Ralstonia solanacearum UW551 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.219170897 1.221935426 1.19502594 1.196301727 1.171475189 1.222401246 1.193541856 1.179700152 1.20138096 1.204737869 1.339276957 1.192711476 1.140008284 1.156159231 1.102778409 1.174149484 1.190507962 1.195925127 89952115 alginase Saccharophagus degradans 2-40 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 0.924996105 0.969496312 0.918997801 0.966032642 0.907654513 0.923954496 0.95304821 0.955496822 0.970162543 0.945773234 0.906932054 0.960664826 0.917685456 0.90706755 0.96250032 0.945544325 1.036348068 0.95170629 145595773 endochitinase Salinispora tropica CNB-440 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.832050619 0.933743781 1.032197271 0.936614189 0.85038026 0.88047453 0.801088241 0.878495581 304396310 cysJ Pantoea sp. aB Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.900228796 0.849703825 108763120 cysI Myxococcus xanthus DK 1622 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 1.497799819 1.442996776 1.436033466 1.438285117 1.430211331 1.455296783 1.411761922 1.44649132 1.424560478 1.424374329 1.406413096 1.449664165 1.405598603 1.407110673 1.405127372 1.433341674 1.425377022 1.421257017 149783343 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.829346168 0.896275234 0.878426233 0.811508778 0.825172939 0.828896353 0.793780293 0.881810523 0.844466193 47933806 mannanase Bacillus circulans Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.922990043 0.966514706 0.904773901 0.919117445 0.989735913 0.921136822 0.928718195 0.91072979 0.912442819 0.935353231 0.890107167 0.927895715 0.908004673 0.873631671 0.843261778 0.891306253 0.927422885 0.946127928 332040510 b_lactamase Hylemonella gracilis ATCC 19624 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 0.993273238 0.999465327 0.973799711 1.001337794 0.985402345 1.081268337 0.950290423 0.954030491 0.939922092 0.967872618 0.945697205 1.087968127 0.994492753 0.901897722 0.929556622 0.936911459 1.002389315 0.99321297 296130681 ara Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.100860103 1.099493943 1.044594297 1.05703243 1.024609629 1.068248514 1.018173064 1.049937076 1.052756335 1.068717653 1.033203189 1.047138806 1.034998806 1.039048731 1.002153762 1.039926534 1.088367301 1.083707515 48290 amyA Thermoactinomyces vulgaris Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Thermoactinomyces; 0.831359012 0.946270675 0.816894209 0.848203508 0.836568568 0.909134913 0.885537126 0.879864351 0.867957621 0.845941971 0.850432101 0.831189476 0.850453901 0.822400887 0.855272698 0.898068653 220725571 badh Postia placenta Mad-698-R Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 1.302687409 1.252973854 1.272410726 1.287761868 1.248272926 1.276708451 1.267067812 1.274917531 1.27461697 1.240430121 1.231044215 1.241316616 1.216936077 1.199016872 1.232680918 1.224586132 1.29375934 1.240271601 328812484 amyA Verrucosispora maris AB-18-032 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 1.254224241 1.22814077 1.21622318 1.227092556 1.204359956 1.26519404 1.123498861 1.171605092 1.213079875 1.211628655 1.197476425 1.24117099 1.203682646 1.190848361 1.147878646 1.170527511 1.267443441 1.227943107 357427789 cellobiase Azospirillum lipoferum 4B Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.868848733 0.807931188 0.831572358 0.849362384 0.805816105 0.835769718 0.82148748 0.807195142 421953068 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.837172195 0.852586386 0.894854236 0.82499838 0.861391673 0.825213389 0.833300393 0.864572478 0.849113303 0.830948015 0.866352042 0.867137782 0.879425086 337759635 tmoabe Hyphomicrobium sp. MC1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 1.133896135 1.154590769 1.106019787 1.092289094 1.098117607 1.119793812 1.100566737 1.101311934 1.074800695 1.086133622 1.102239652 1.100360777 1.048344598 1.049353945 1.01363987 1.041008227 1.091709158 1.130800564 118703293 nitrilase Sphingomonas wittichii RW1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.55258799 1.501739162 1.487178341 1.503221901 1.49224245 1.539880076 1.47251666 1.492074373 1.475679351 1.47191777 1.488428139 1.495461324 1.494457606 1.440775207 1.483092309 1.482374778 1.539309737 1.47019226 118027429 nitrilase Burkholderia phymatum STM815 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.015379561 0.963646145 0.942094211 0.957869445 1.004385915 0.996477441 0.975842096 0.955563146 0.986860209 0.996757648 0.962026706 0.974513469 0.972500353 0.9627326 0.917273042 0.9529585 0.977491189 1.021374078 83972398 nosz uncultured alpha proteobacterium Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 0.999364016 0.998629034 0.945828943 0.979447257 0.961226791 1.046922648 0.90355452 0.924976796 0.970847559 0.960761845 0.899165576 0.920015809 0.952710706 0.923432833 0.889507587 0.953106714 1.005564796 0.994757734 91784666 pcpe Burkholderia xenovorans LB400 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.799810653 0.817638678 153888844 mdlc Ralstonia pickettii 12D Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.928280669 0.884900878 0.871606332 0.924690465 0.882599823 0.908162547 0.852653544 0.853416879 0.89473348 0.911913622 0.931959182 0.857871953 0.858051047 0.917323556 0.856251249 0.875925188 0.918468711 0.911141085 319750450 CsoS1_CcmK Isosphaera pallida ATCC 43644 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 1.458974332 1.428399893 1.425613377 1.441506237 1.426040734 1.452913712 1.403614271 1.429970845 1.418221414 1.414864018 1.432020053 1.439687661 1.404968513 1.39738837 1.439067366 1.415289663 1.442967581 1.403910684 177840407 ara Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.858315713 0.878554699 0.808346015 0.897163632 0.843099674 0.865471489 0.884575732 0.848066016 0.877418733 0.821559082 0.849592583 0.852592699 0.884673132 0.858770136 295897706 cutinase Mycobacterium parascrofulaceum ATCC BAA-614 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.116457086 1.101165094 1.092958277 1.14655305 1.115331691 1.110409363 1.110819261 1.113322708 1.097162714 1.079987085 1.086201582 1.111927582 1.058379313 1.058906254 1.067556029 1.04644231 1.09610232 1.110466091 46915039 ppx Photobacterium profundum SS9 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 1.013115355 1.034783552 1.015725127 0.987184842 1.011337221 1.038875494 0.988202807 0.978426801 0.9617928 0.998444101 0.963430285 0.949879415 0.977353364 0.986479624 0.975114453 0.991047954 1.025640933 1.03575995 255292489 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.883920569 0.870568968 0.882681649 0.891795608 0.889452475 0.841102135 0.912117663 0.885207546 0.897666583 0.872536644 0.820954944 0.899879584 0.797315622 0.84798804 0.837271096 0.870411413 0.882328572 367478425 FBPase Bradyrhizobium sp. ORS 285 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.13546684 1.134229422 1.089563879 1.121499328 1.057445983 1.115870026 1.089163957 1.101026802 1.112935694 1.112849423 1.0985057 1.093621914 1.073080561 1.076618449 1.052691299 1.073358141 1.12408941 1.120078376 315271263 amyA Deinococcus deserti VCD115 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 0.83027765 0.794025526 0.812581802 0.876933965 0.838379596 357037705 aln Desulfotomaculum gibsoniae DSM 7213 Organic Remediation Others NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 1.040960944 1.003488671 1.023496324 1.019324178 0.98374402 0.986835031 0.995823302 1.062755424 1.011633877 1.008249225 0.99724203 1.049505789 0.974072023 0.960120251 1.006601735 0.978896657 1.026233594 1.006263099 87302496 CsoS1_CcmK Synechococcus sp. WH 5701 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.07019085 1.06478149 1.051316469 1.10889545 1.065044555 1.118302856 1.00689732 1.057630734 1.039830243 1.074851003 1.038410504 1.064198903 1.035912999 1.062874199 1.014544727 1.050072008 1.09559303 1.076516056 227937723 fthfs uncultured Alkaliphilus sp. Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus; 0.996723147 0.966986709 0.984117284 0.974537347 0.967022698 0.978670353 0.978590239 0.972091398 0.969122238 0.955638909 0.917086706 0.945212693 0.930736342 0.941334141 0.877660066 0.903200462 0.98463533 0.971580376 329901004 TIM Oxalobacteraceae bacterium IMCC9480 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 0.812910862 0.805142917 0.854010692 0.810790248 0.823921769 0.80797692 0.855273676 0.819462834 0.853112529 0.825665969 0.829507201 0.82444688 339274371 amyA Synechocystis sp. PCC 6803 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 0.80992894 0.836025224 0.802584997 0.872702085 0.825499763 0.821116491 0.828914375 0.87714014 0.833353928 0.790510071 0.921053961 0.80213902 0.854826297 0.80451779 0.829620236 0.831651975 154341937 GAPDH_Euglenozoa Leishmania braziliensis MHOM/BR/75/M2904 Other Phylogenetic NA superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Leishmania;species:Leishmania braziliensis; 0.955186923 0.904058214 0.929632322 0.944851914 0.915890547 0.925312361 0.822799048 0.931189611 0.924393599 0.908557611 0.850907067 0.873801327 0.8585004 0.873406788 0.867780909 0.929135718 0.926908708 222106906 vdh Agrobacterium vitis S4 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 0.779196606 0.824617882 0.795648638 0.760753789 0.819887006 0.82115622 82716671 oxdb Pseudomonas putida F1 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.032669171 1.051661653 0.987089032 1.011166495 0.970069134 1.045543354 0.946252633 0.983548637 0.982392887 0.985219895 0.943847414 0.995516679 0.947476974 0.99262392 0.932130294 0.942220546 1.044210106 1.031230095 196479344 xylanase Phenylobacterium zucineum HLK1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 1.293803218 1.271702111 1.273442349 1.294841133 1.260749078 1.281413515 1.259533369 1.276059525 1.267029265 1.253335115 1.240989504 1.249321193 1.238357285 1.212733423 1.201565955 1.226760176 1.287755474 1.229622259 373102618 SoxC Cupriavidus basilensis OR16 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 1.319300354 1.252745137 1.265308616 1.272814376 1.240582606 1.292214185 1.249818364 1.25156018 1.266831373 1.241266568 1.226788522 1.255482025 1.225537731 1.188723876 1.217236493 1.225562849 1.296998618 1.236799545 302436838 amyA Streptomyces sp. AA4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.025560789 1.085727478 1.049387889 1.06365708 1.04010073 1.055408728 1.030887882 1.027189514 1.005828212 1.021699815 0.988935451 1.040592036 1.013475955 0.966620691 0.994118332 1.025974528 1.055704082 1.02558899 56785448 phenol_oxidase Trametes sp. 420 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 0.800631046 0.812443162 0.78739631 0.861126461 0.804398253 0.797814443 0.819755124 0.797028842 0.872292728 0.815375666 0.829024117 336301569 endoglucanase Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.97168112 0.947997516 0.965912234 0.956553727 0.978626779 0.980226718 0.951506346 0.947386548 0.971663028 1.010542795 0.966817589 0.937728918 0.915198092 1.009635478 0.958165912 0.93860494 0.970954838 0.981306676 167836550 bphF1 Burkholderia thailandensis MSMB43 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 1.377353222 1.329423279 1.331914654 1.345927692 1.316801863 1.352294367 1.310674519 1.32764204 1.340286735 1.322732692 1.31817707 1.343455875 1.311995639 1.302177526 1.30200884 1.329350011 1.3510887 1.305637856 240009291 exaa(moxf) Methylobacterium extorquens AM1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 0.977548448 0.974562489 0.982838294 0.968227704 0.990406706 0.990676855 0.970697243 0.915662582 0.966697972 0.902270263 0.888429814 0.930224665 0.914768303 0.91669409 0.900267808 0.898400705 0.986876337 0.996325031 189092779 lactase_fungi Penicillium expansum Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 0.85608943 0.949325611 0.851087983 0.870939136 0.881886967 0.871326965 0.905170129 0.915634501 0.921039452 0.893599371 0.909879495 0.87280869 0.848552082 0.933782686 0.817259996 0.841630711 0.855251434 0.865198294 94470859 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.872140019 0.816881078 0.868838917 0.951895339 0.958117581 0.870781687 0.954100478 0.901762181 0.92867788 0.862761608 0.905595155 0.90309186 0.847205822 0.786467867 0.833097852 0.882733056 0.856055978 108524633 mer Plasmid QKH54 Metal Homeostasis Mercury Detoxification 0.894303234 0.995462374 0.99687627 0.911309108 0.952831113 0.994647084 0.893339823 0.959470194 0.896523919 0.996306594 0.921201912 0.945638049 0.955435024 0.952733962 0.923078035 0.965305852 0.966432066 1.001510105 120402451 cutinase Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 0.882674214 0.952028905 0.86050709 0.92155452 0.912016425 0.94600015 0.909774369 0.912378748 0.922487549 0.93107303 0.853422522 0.920180691 0.844329602 0.843768174 0.916887117 0.908107478 0.915204056 0.976484433 367041774 rgl Thielavia terrestris NRRL 8126 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 0.832492576 0.834444892 0.797952811 0.784849433 0.843479572 0.82172543 0.837558705 0.781018591 0.838173909 0.86010018 325543141 pme Xanthomonas perforans 91-118 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas perforans; 0.984163757 0.939313701 0.968905284 0.983377041 0.852284791 0.935518642 0.853960479 0.907742301 0.981092278 0.881846949 0.909332257 0.912711855 0.881631286 0.862151004 0.825352063 0.882627845 0.969386724 0.913715565 84778339 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.046212815 1.048944854 1.061158696 1.09839349 1.082219708 1.057873135 1.049894927 1.057415094 1.045206194 1.042854535 1.03732022 1.073551374 1.062146179 1.009273605 1.027634647 1.022640707 1.056009666 1.036253792 149142298 SoxV Roseovarius sp. TM1035 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 0.952459748 0.942905008 0.905517855 0.948070664 0.901656061 0.874116534 0.879697412 0.940540461 0.927857792 0.96840177 0.904239509 0.922032268 0.85714204 0.862921019 0.852879098 0.903764283 0.942869334 0.920490342 111071978 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.82078599 0.869140224 0.836761749 0.825683495 0.823148885 0.937590884 0.830849608 0.869979655 144578352 mg_chelatase Ostreococcus lucimarinus CCE9901 Secondary metabolism Pigments Chlorophyll NA 0.910445333 0.904772902 0.902511711 0.915045195 0.920831058 0.921986603 0.953655559 0.935818754 0.847433496 0.917919284 0.951168905 0.947759596 0.917944296 0.882987507 0.869130865 0.867664637 0.904123381 0.932645996 318042430 b_lactamase Synechococcus sp. CB0101 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.821081558 0.861140499 0.826882139 0.858473476 0.839638271 0.829493676 0.851924485 0.836044602 0.836491141 0.829839028 0.852492602 0.896666636 315607104 RgaE Prevotella buccae ATCC 33574 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 0.785606867 0.789001121 384090032 mannanase Paenibacillus mucilaginosus K02 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.918132852 0.935158506 0.874604538 0.889209035 0.875372561 0.86999293 0.877815805 0.921443709 0.878224286 0.826063055 0.897800412 0.821274556 0.816344292 0.856884428 0.8971288 0.948287684 139478553 mer uncultured alpha proteobacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.231433405 1.231075964 1.195219399 1.219783854 1.182087677 1.235803235 1.186996138 1.203744382 1.204680958 1.211693695 1.183246796 1.207288151 1.16665086 1.176307631 1.149243938 1.190595111 1.226436061 1.226109727 121712495 phytase Aspergillus clavatus NRRL 1 Phosphorus Phytic acid hydrolysis NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.980478935 0.899484143 0.923588454 0.923298535 0.931657165 0.910767343 0.896984826 0.93986909 0.932926991 0.932884172 0.881267986 0.912136952 0.877641072 0.896656762 0.924631722 0.857438557 0.942369128 0.921770938 114341341 mer Maricaulis maris MCS10 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 0.874157722 0.898061129 0.832850028 0.813530901 0.82155645 0.807898296 0.842317793 0.826819799 161505242 phn "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.955270286 0.93688254 0.94499099 0.980092049 0.938952409 0.948975674 0.980203832 0.987594284 1.00641369 0.898755499 0.905854845 0.931998853 0.780314418 0.844820649 0.770837552 0.867305261 0.865850954 0.903495859 357226553 bphd Marinobacter manganoxydans MnI7-9 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 1.160334316 1.133258387 1.141385444 1.163941851 1.102047566 1.149042018 1.121434805 1.147965333 1.137202026 1.150948756 1.123241131 1.15384753 1.136376057 1.124411767 1.173524926 1.094566338 1.176805066 1.141956334 88807729 CsoS2 Synechococcus sp. WH 7805 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.790466357 0.827129617 0.814317944 0.834878217 0.915142189 0.871690413 0.861532648 0.839699917 0.884308345 0.97737046 0.920516801 91977888 arsm Rhodopseudomonas palustris BisB5 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.767905052 0.821061913 0.814746193 0.794721399 0.809341245 0.825317273 223586061 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.205357084 1.194670396 1.168638243 1.173155737 1.133878465 1.189460666 1.128831704 1.151180631 1.157530419 1.168377744 1.156593934 1.162571939 1.13738264 1.17383236 1.122988849 1.142111489 1.21175502 1.208418176 171990794 amyA Exiguobacterium sibiricum 255-15 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 0.780723929 0.8427808 0.79183097 0.814616045 0.808323442 0.831571747 356658854 chne Rhodococcus opacus PD630 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.800745803 0.874757405 0.832244502 0.820033774 0.874166423 0.841696633 0.803636258 0.795713719 0.843378634 0.823903574 0.82462603 0.83160772 0.800003017 0.817441047 0.815251612 0.88640437 118468002 cutinase Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.04378984 1.084383773 1.028179613 1.051016372 1.013814897 1.052691843 1.054791341 1.042235676 1.040223114 1.030175129 1.000067182 1.060281884 1.005240979 1.014343046 0.945082089 0.95839538 1.06291876 1.067621373 291446987 pcpb Streptomyces roseosporus NRRL 15998 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 0.957893654 0.948942696 0.953997407 0.944749724 0.929017423 0.953649693 0.955494669 0.972162814 0.968276113 0.956155802 0.944386703 0.935461002 0.8662224 0.887662293 0.849278297 0.870228746 0.979421791 0.959336853 212703866 dsra Desulfovibrio piger ATCC 29098 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 1.120338437 1.126997757 1.085926888 1.104165049 1.104750438 1.120756188 1.073050709 1.094312848 1.078521154 1.09248529 1.092942254 1.103594284 1.090918759 1.084626729 1.087543362 1.112798915 1.123269863 1.129584216 389931185 mdla Burkholderia terrae BS001 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 1.12286654 1.061442286 1.072094018 1.100462248 1.095016732 1.13917103 1.078396886 1.063513406 1.109723877 1.044944136 1.079321215 1.109890116 1.031583167 1.031182476 1.040708272 1.091968527 1.081744271 1.021136764 307946977 fthfs Roseibium sp. TrichSKD4 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 0.840777248 0.865571192 0.837554639 0.855862008 0.85043013 0.901061182 0.814892587 0.85124591 0.885060479 0.848086716 0.825029922 0.83364097 0.869375495 0.866769441 333482002 alkb Amycolicicoccus subflavus DQS3-9A1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 0.903441271 0.838734435 0.88191683 0.839771248 0.79533724 0.837343471 0.832439568 115402219 endochitinase Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.822778231 0.788280335 0.846909208 0.831539285 0.856191386 0.846602567 0.81704485 0.860892791 0.85760539 0.848802852 0.815869069 0.839202535 83590789 atza Moorella thermoacetica ATCC 39073 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 1.293985469 1.274455536 1.276366335 1.28647231 1.273746194 1.316237605 1.290317991 1.297816675 1.274405137 1.260602063 1.271281034 1.249512401 1.285063219 1.250522426 1.226018329 1.245752326 1.296346506 1.263186799 255084890 actin_Viridiplantae Micromonas sp. RCC299 Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 0.932806955 0.944521282 0.92864805 0.978745737 0.934733402 1.025497727 0.916660993 0.864049187 0.933054775 0.977391979 0.963700548 0.946572598 0.9361181 0.965578026 0.961350548 0.958769274 1.000133878 0.945233113 26986207 soxY Pelodictyon phaeoclathratiforme Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon; 1.476868514 1.436234712 1.435358995 1.383990042 1.42765919 1.447540328 1.392337241 1.415365616 1.410951376 1.421050461 1.403758027 1.409144168 1.410561199 1.391975303 1.409029513 1.404131264 1.414776899 1.414594628 290568551 fthfs Stackebrandtia nassauensis DSM 44728 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 1.09364086 0.998076589 1.015519961 1.069530267 0.991479995 1.004139618 1.035413718 1.063350785 1.012696902 0.997096666 0.965681223 1.036971047 0.973568255 0.951994549 0.936339535 0.993895858 1.016377953 0.993644873 77969155 vana Burkholderia sp. 383 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.898627666 0.957093316 0.938553256 0.852859195 0.91159444 0.920120118 0.901299554 0.88904569 0.932166711 0.861271566 0.862918564 0.903641328 0.828443775 0.870085055 0.842267736 0.839379524 0.931213909 125716454 phenol_oxidase Ensifer adhaerens Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Ensifer; 0.785670805 0.809936017 0.81019824 0.869483903 0.81783488 0.82120715 0.83487894 0.825559056 0.860200952 0.794731674 0.843951283 10175620 arsc Bacillus halodurans C-125 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 0.842063367 0.867449644 0.787810591 0.816337981 0.828589852 0.831629147 0.796552957 0.816937593 0.89695919 0.899315743 0.816453923 0.866884811 0.823818428 0.854340763 154148872 frdA_rTCA Campylobacter hominis ATCC BAA-381 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 0.903987153 0.922151598 0.925001932 0.953249783 0.90602804 0.953213701 0.926217873 0.875356832 0.943389986 0.911575368 0.865157144 0.895679788 0.861299583 0.841586099 0.875750098 0.861671695 0.956034072 0.937430393 332372314 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.809248806 0.800705589 0.829809383 0.818972784 0.810635458 0.826366041 0.804753367 0.826115574 0.825129637 0.827148709 110821793 atzd Rhodococcus sp. RHA1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.891725757 0.909993872 0.853993296 0.837779169 0.873182371 0.885736826 0.821745228 0.856575096 0.861599409 0.871496336 0.884306046 0.827793056 0.825215328 0.869700146 0.869429479 323366500 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.906471504 0.918632598 0.886507865 0.888850207 0.858799038 0.904042094 0.89067834 0.892484043 0.885122133 0.903104325 0.910123513 0.87746244 0.861686429 0.840388166 0.888675844 196200199 amyA Cyanothece sp. PCC 7822 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.763945933 0.78478935 0.797700696 0.846032157 256363045 acetylglucosaminidase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.874859855 0.887801114 0.85966879 0.922363933 0.90292662 0.867926182 0.922525563 0.921720046 0.904162424 0.856410613 0.855958749 0.91410573 0.856341051 0.831558479 0.825681505 1.004331534 0.878068767 319438900 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 1.031772003 1.052931058 1.01716568 1.03850569 0.973620046 1.040458341 0.959141225 1.057752837 1.026720809 1.0202809 0.965993781 1.019151185 0.914636608 0.993756157 0.905962821 0.984602923 1.002592426 1.058350017 170516856 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.82434642 0.794325681 196212317 alkk Geobacillus sp. G11MC16 Organic Remediation Others NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.998892805 0.942210899 0.900149171 0.933391833 0.830115073 0.928914195 0.862270587 0.877448421 0.936368441 0.938498323 0.856529329 0.886134537 0.893778192 0.891223953 0.840064382 0.884453918 0.947687436 0.982028017 218781822 acetylglucosaminidase Desulfatibacillum alkenivorans AK-01 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 1.243634783 1.224559598 1.230994836 1.214580523 1.24028199 1.247674674 1.233437084 1.206358036 1.241863847 1.230771256 1.230393602 1.223810187 1.217503597 1.186396156 1.176951791 1.194135433 1.244899841 1.218770793 197299320 amyA Ruminococcus lactaris ATCC 29176 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus lactaris; 0.917928055 1.018276512 0.962936551 0.943118824 0.883035608 0.946613984 0.915722792 0.935388383 0.952540603 0.966882885 0.940090409 0.95071837 0.904001776 0.913504259 0.900681339 0.895221052 0.912458847 0.940024 117188449 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.984594556 0.976627617 0.885300355 0.966562604 0.941570606 0.950679617 0.87479722 0.898357496 0.935990959 0.961066844 0.939753929 0.924379991 0.909807116 0.892086925 0.93324613 0.898448989 0.976731599 1.001894396 373956109 amyA Mucilaginibacter paludis DSM 18603 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 1.060854547 1.057767653 1.015307408 1.101007709 1.010640799 1.056786094 1.004504107 1.038240816 1.029023463 1.034600531 1.00697478 1.031866385 1.003867949 1.021190987 0.995020988 1.049927989 1.071898335 1.035037981 66574689 ara Xanthomonas campestris pv. campestris str. 8004 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 0.807905535 0.830649487 0.825362541 0.84205033 0.812874025 0.809316168 0.794290676 0.841853617 0.830512686 345873282 CsoSCA Thiorhodococcus drewsii AZ1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 1.034705703 1.016722432 1.028501129 1.026578005 1.017208323 0.984965199 0.99069893 1.012332129 1.04086301 1.009399726 1.014129982 1.053865314 0.987801679 1.007128567 1.038147967 1.007724956 1.019362156 0.997285202 288917135 amyA Frankia sp. EUN1f Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.106489093 1.008816612 0.986497404 1.023431753 1.001771517 1.064344482 1.043794126 1.031091108 0.9896412 1.056792829 0.972681106 1.023354533 0.992853143 0.988060261 0.919303746 0.989763975 1.018865655 1.031929094 260936539 chitinase Vibrio orientalis CIP 102891 = ATCC 33934 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 1.017640799 1.060654643 1.020459998 1.058529115 1.032417169 1.040273291 1.000524057 1.045032713 1.023093303 1.035687479 1.023469843 1.078394941 1.028090779 0.978351622 1.030761657 1.014010854 1.042377804 0.970781042 26278786 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.874427258 0.854924963 0.837953361 0.899850172 0.792450807 0.815172525 0.827124158 0.84656504 0.81633458 297623672 endoglucanase Truepera radiovictrix DSM 17093 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 0.980900066 0.956347846 0.978456175 1.016712951 0.934931735 0.972901435 0.950417684 1.02164013 0.982633476 0.945058446 0.931375961 0.967321106 0.949903299 0.94608918 0.941701859 0.97279277 0.990341471 0.95565585 227069417 narb uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 0.921636614 0.951963672 0.937877027 0.934696325 0.957747888 0.932713616 0.927951123 0.921700263 0.905191549 0.934150726 0.915718442 0.940482567 0.942867729 0.90254021 0.914335177 0.909306769 0.931368186 0.960693817 334893067 cysJ Salinisphaera shabanensis E1L3A Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 1.267204994 1.181131781 1.217310652 1.23577272 1.226449628 1.354429402 1.217109072 1.202095579 1.220301777 1.288977501 1.240045649 1.223363073 1.24435498 1.327153568 1.455499333 1.233477577 1.255337313 1.223240375 116013326 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.148407546 1.040724938 1.019897742 1.037152863 0.995773241 1.036683789 0.971874751 0.995925741 1.043709708 0.990343466 0.985248728 1.009451896 1.060752114 0.97773917 1.070674433 0.992287508 1.045612864 1.016056652 378747746 aps_apra uncultured Firmicutes bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Firmicutes; 0.854682745 0.85914801 0.831863026 0.83719519 0.821921885 0.886303842 0.845890783 0.841461593 0.826636439 0.880384823 0.831868596 0.820075857 0.825925678 0.884108497 0.841304169 0.85289534 0.833247847 0.87730687 223586016 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.961058614 0.974055628 0.981530456 0.99653568 0.957655114 0.970939249 1.004531239 0.975199469 0.964238421 0.959179593 0.985632901 0.97346595 0.946185939 0.934182436 0.936084793 0.925419807 0.956515892 0.946328499 257867825 amyA Enterococcus casseliflavus EC30 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 0.896045101 0.882167217 0.868828411 0.920040596 0.873518433 0.846193954 0.869940683 0.88948754 0.859961811 0.868285169 0.837639919 0.901806754 0.920003594 63003137 one_ring_12diox uncultured soil bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.319320437 1.27936815 1.223084386 1.223197294 1.274896384 1.308442678 1.240263004 1.23926529 1.269985923 1.216564281 1.241174105 1.236419493 1.259639468 1.201779623 1.231079409 1.231301659 1.23302255 1.274253976 403203261 cmci Gordonia rhizosphera NBRC 16068 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 0.95489506 0.937586374 0.95733933 0.938798299 0.928143192 0.984470888 0.950911972 0.939031042 0.96417192 1.009406337 0.908249466 0.913208825 0.943851114 0.972968582 0.950534969 0.957510015 0.949622095 0.999298325 384072827 xyla Halobacillus halophilus DSM 2266 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 0.832378692 0.857133607 0.831898565 0.865427112 0.898706101 0.857864163 0.902811024 0.863640564 0.858420078 0.857071216 0.864156858 0.834206471 0.798845479 0.795881062 0.862496457 0.828521631 109452509 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.971258492 0.957245764 1.007699955 0.987057562 1.019249029 1.006693376 1.03182869 0.995227288 0.977974394 1.025166059 1.026569024 0.976208413 0.994806631 0.973833103 0.930629037 0.930225777 0.981524101 0.991899917 299816789 cellobiase Listeria grayi DSM 20601 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 0.933142812 0.81271122 0.856308716 0.826488596 0.799116678 0.832230395 0.865558466 0.858601676 0.756272328 0.8189604 28919715 ara Neurospora crassa OR74A Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 0.916963484 0.889210465 0.87353165 0.932472818 0.817569336 0.899976121 0.846730537 0.884521364 0.908095728 0.878854897 0.844993111 0.875697898 0.783461777 0.813868692 0.799980634 0.896988841 0.880725236 28971823 nagg Sphingomonas sp. P2 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.996895445 0.99399532 0.968397762 1.037847772 1.016260202 1.002838897 1.013532929 1.019337126 1.025015879 0.990963858 0.986898181 1.018296552 0.946777343 0.91417226 0.928446003 1.000844705 0.983907003 0.95394872 212539978 axe Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 0.855480685 0.824590839 0.863456483 0.841608606 0.881318395 0.906586908 0.832163242 0.800140922 0.804366476 0.906946996 0.878749317 0.86867136 0.816803472 0.843272331 0.820910486 0.849865758 0.823039501 91692879 SoxC Burkholderia xenovorans LB400 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.005259081 0.941939456 0.972836433 1.006867033 0.967559609 0.925464434 0.991995213 1.009178109 0.985617436 0.938974593 0.928785955 0.933156983 0.896296798 0.875487343 0.903953586 0.921464135 0.959468863 0.969373437 291416905 atza Oribacterium sp. oral taxon 078 str. F0262 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 0.983848741 0.861375239 0.941963348 0.938558123 0.882712357 0.881326272 0.84410077 0.902311451 0.917063438 0.916038672 0.949784628 0.923945643 0.90322914 0.919494689 0.903643167 0.903337977 0.921388739 0.885958187 225405370 CsoS1_CcmK Clostridium asparagiforme DSM 15981 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 1.195347812 1.165073704 1.194823591 1.161986229 1.121158785 1.153685466 1.087706204 1.132974316 1.166026862 1.148377874 1.160378617 1.157123733 1.131622144 1.111970198 1.10757918 1.133635321 1.17134429 1.143314581 87307590 RgaE Blastopirellula marina DSM 3645 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 0.945872722 1.008112425 0.998039989 0.909845683 0.984091107 0.8690012 0.960690233 1.001085422 0.967232902 0.986824243 0.937453179 0.941286198 0.927702696 0.960777811 0.986907506 163262585 cysI Bordetella petrii Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 1.176418289 1.16623874 1.15270403 1.1464029 1.11395077 1.186935169 1.11022831 1.180864781 1.128803469 1.176618661 1.130993866 1.15123398 1.08568923 1.158918318 1.102969254 1.125333365 1.164691013 1.191980062 393760576 nosz Alcaligenes faecalis subsp. faecalis NCIB 8687 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 1.092677554 1.098043066 1.060480554 1.048471855 1.090204336 1.107540403 1.098631627 1.074723534 1.095704694 1.123105855 1.105623403 1.087759703 1.064073731 1.058850678 1.003000102 1.022861418 1.111620375 1.143217865 363416306 GAPDH_Calvin Acidovorax sp. NO-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.898971886 0.929458207 0.857684436 0.943278926 0.831195078 0.917288052 0.897835275 0.890171794 0.896821474 0.899358547 0.870098044 0.890865805 0.864519314 0.866375354 0.877360681 0.896644517 0.939089494 0.922459298 6573214 nitrate_reductase Chlamydomonas reinhardtii Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 1.091014717 1.104820828 1.084470118 1.083885971 1.082956704 1.11237307 1.090043482 1.094851903 1.065217567 1.102059814 1.091772271 1.093179051 1.082894567 1.097388913 1.0867845 1.097912231 1.103331626 1.106532113 121714210 dehh109 Aspergillus clavatus NRRL 1 Organic Remediation Chlorinated solvents NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.93165877 0.974086688 0.916152122 0.95077436 0.912449301 0.95398414 0.893795371 0.904168069 0.930730719 0.927369194 0.893059824 0.905497464 0.920720934 0.91218077 0.852979239 0.876954825 0.970244406 0.953805398 359834822 pcag Actinoplanes sp. SE50/110 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.251085012 1.264667752 1.238101044 1.255753853 1.255044032 1.282922789 1.245071016 1.230517631 1.225118005 1.243342886 1.256478985 1.266281541 1.242046915 1.247989761 1.24258537 1.271903638 1.263176451 1.244900747 349797346 cysJ Neisseria wadsworthii 9715 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria wadsworthii; 0.98530649 1.007660389 0.987605883 0.999377135 0.974626367 1.009148623 0.924259052 0.957534952 0.967670761 0.936687303 0.927255053 0.941637139 0.96552246 0.935011531 0.909072123 0.917402063 1.007671559 1.008061841 227342473 xyla Rhizobium sp. NGR234 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 0.908169197 0.919272591 0.990790468 0.933080751 0.942876218 0.889010361 0.889548672 0.90031656 0.898927839 0.883561958 0.879202505 0.935123329 0.884059807 0.884593331 0.859444142 0.864488426 0.929284012 0.898527551 108765835 badh Rubrobacter xylanophilus DSM 9941 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 1.017033913 1.064614993 1.01867738 1.055518284 0.998689779 0.977440212 0.959435086 0.975875426 1.000647846 0.966580851 0.963594543 1.01513255 0.976161563 0.956750818 0.918138762 0.963190987 1.046123747 0.999310159 82946635 PRK Magnetospirillum magneticum AMB-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 0.81397556 0.813658574 0.786051407 0.857521131 126434012 catechol Mycobacterium sp. JLS Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.807958689 0.87630083 0.890578134 0.834058689 0.878897281 0.821163794 0.851064886 0.832667792 0.831709807 0.809799545 0.849169331 0.848418458 0.811955502 0.834765064 0.843760615 0.857451307 3157686 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.828747766 0.822373391 1.100872852 0.801247448 39651084 nitrilase Rhodopseudomonas palustris CGA009 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.768428212 0.828662626 116197198 tannase_Cdeg Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Tannins superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 0.921253345 0.864622523 0.836967983 0.923248741 0.814884934 0.882659985 0.86763427 0.909629214 0.90597235 0.873061775 0.815701909 0.854329343 0.88987044 0.858353468 109897169 xylanase Pseudoalteromonas atlantica T6c Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 0.939074423 0.885628319 0.956045551 0.972729393 0.924989615 0.891139819 0.907147787 0.919554083 0.970162666 0.951822443 0.892673395 0.976601104 0.940000589 0.90203591 0.923692631 0.903599594 0.923634885 0.932223788 332039287 GAPDH_Calvin Hylemonella gracilis ATCC 19624 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 0.892696019 0.882768943 0.812584325 0.842346827 0.867848556 0.863818654 0.810606392 0.91209813 78102121 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.816065907 0.784307648 365804439 amyA Streptomyces cattleya NRRL 8057 = DSM 46488 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.502042933 1.465041156 1.458172097 1.470329287 1.451638358 1.499363494 1.454982395 1.464869432 1.437712061 1.444955256 1.451727475 1.444532665 1.420950332 1.402397002 1.428357382 1.423859581 1.485279102 1.446934468 156043229 glucoamylase Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.817398339 0.894540505 0.790787105 0.934369673 0.859382106 0.852938434 0.940109821 0.966723196 0.860457983 332981939 ppx Mahella australiensis 50-1 BON Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 1.350916688 1.338061915 1.326393865 1.320173761 1.334964902 1.397180738 1.314295885 1.321514236 1.32720226 1.340595256 1.312430388 1.301560337 1.311262429 1.311998543 1.295855705 1.323166479 1.344875402 1.337427794 89054191 tktA Jannaschia sp. CCS1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 1.111118397 1.033601955 1.061295459 1.09201362 1.050251285 1.048879972 1.033643278 1.046486066 1.052614681 1.000710846 0.998209017 1.050595235 0.998130511 0.966762828 0.992989749 1.015069508 1.057460343 1.026742746 108802218 nhh Mycobacterium sp. MCS Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.866779795 0.944556743 0.885519258 0.912460129 0.899865926 0.914561689 0.822449799 0.829634835 0.848928658 0.850669148 0.802090698 0.869759599 0.822140301 0.82552995 0.871361745 0.932777615 188485515 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.756371329 0.811460218 260767132 Sir Vibrio furnissii CIP 102972 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 0.947608668 0.941182202 0.978083769 0.994380792 0.95366214 0.924615476 0.998063019 1.019573227 0.993573977 0.945274295 0.91095775 0.968254859 0.918918393 0.88576869 0.87601041 0.926998438 0.966319474 0.947842437 421953064 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.862305078 0.876013218 0.896030835 0.886554317 0.792223921 0.858424542 0.855043088 0.880947664 0.914224393 0.916481484 0.872144344 0.882356509 0.818971137 0.817710044 0.902896848 0.903731157 372272125 mhpb Marinobacterium stanieri S30 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 0.938447351 0.953941694 0.915758173 0.963594685 0.919905226 0.960418911 0.914297036 0.91283742 0.976901131 0.925470423 0.912838715 0.957314915 0.909626557 0.915280189 0.961093762 0.922294516 1.008628336 0.977679342 322436284 RgaE Granulicella tundricola Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 1.00709099 0.994882951 0.970872292 1.010590036 0.95720342 0.987525106 0.946660522 0.990213049 1.008733149 0.973335923 0.964122287 0.987685772 0.920603076 0.955322778 0.921559308 0.951499117 1.000306866 0.981889293 376372758 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.122784699 1.103297015 1.064359177 1.132632123 1.051756101 1.103731787 1.101350538 1.113776306 1.093762862 1.087869976 1.051811374 1.122732157 1.063337911 1.054034623 1.056404916 1.055012924 1.124529782 1.089212332 33640918 CsoS1_CcmK Prochlorococcus marinus str. MIT 9313 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 0.807526277 0.790490559 0.819970899 0.813466467 0.786242747 0.82407058 0.847402694 0.846533309 0.835124572 0.782966125 0.785366067 0.836201264 302443005 amyA Streptomyces sp. C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.804427984 0.911080349 0.874571674 0.860523893 0.871916792 0.832636033 0.777869171 0.842163704 0.819357826 0.829010995 0.844510587 0.818375899 0.858067088 0.934720437 311108592 SoxC Achromobacter xylosoxidans A8 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 1.030721305 1.006308678 0.98658001 0.987203444 1.025857998 1.008147528 1.017774734 0.993684404 1.025998347 1.021187302 1.027957389 1.026544184 0.966337633 0.971303599 0.927749768 0.957565737 1.028284373 1.071502082 146192107 CsoSCA Bradyrhizobium sp. ORS 278 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.936710539 0.919549147 0.844880439 0.941445792 0.863464659 0.907209312 0.869347657 0.910024586 0.917538733 0.91782965 0.838788696 0.891868708 0.808313369 0.87290688 0.821788204 0.862496211 0.892173015 0.928358836 387889307 mhpb Escherichia blattae DSM 4481 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 0.99841505 0.815901319 0.804646358 0.779848988 0.808023473 0.786115361 225075558 ppk Neisseria flavescens NRL30031/H210 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 1.316360503 1.276066658 1.301979007 1.303244769 1.319522742 1.345756266 1.308928961 1.309572793 1.282715377 1.314703908 1.323449948 1.303951341 1.293089564 1.290703887 1.30354124 1.295129813 1.307299637 1.303389192 94496157 RgaE Sphingomonas sp. SKA58 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 0.817093792 0.868873457 0.843764392 0.848010786 0.885614476 0.822850816 0.821939928 0.824561224 0.859474932 0.935607391 0.834188229 0.894718481 315447245 amyA Ruminococcus albus 7 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 0.769526481 0.891615319 0.774701183 0.942401978 0.913623276 0.9331084 0.767783744 0.936024378 0.914837412 0.872712274 0.949617711 0.84196 94471271 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.331766951 1.299081163 1.283091223 1.275014496 1.273214799 1.320270189 1.276277976 1.267258284 1.271054252 1.30297012 1.277662103 1.267975248 1.231315628 1.248119869 1.21632324 1.262266464 1.308306219 1.295297068 212171444 alkb Alcanivorax sp. S15-9 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 1.014618888 1.006304061 1.003606035 0.994409421 0.938453824 0.980837422 0.930024498 0.949560374 0.99833539 1.000375566 0.989664316 0.952677493 0.942443426 1.032646893 0.906663747 0.959170908 1.015200823 1.001650221 162707953 catechol uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.120037414 1.076909014 1.077902606 1.096358997 1.051873222 1.081994013 1.064813454 1.068555295 1.090013969 1.050837779 1.064286621 1.092496109 1.054686539 1.040574743 1.045433373 1.05517886 1.102213978 1.062285608 325948635 acetylglucosaminidase Nocardioidaceae bacterium Broad-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 0.903149211 0.93423694 0.913616786 0.886324025 0.920244934 0.921601899 0.870471265 0.853191223 0.919632171 0.93552073 0.870538427 0.856022931 0.871442061 0.842119864 0.871137985 0.948026804 0.927902423 209548034 ppx Rhizobium leguminosarum bv. trifolii WSM2304 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.081538876 1.074759285 1.100468614 1.094448377 1.045986148 1.079530554 1.050965483 1.077795729 1.082053992 1.109554188 1.064053274 1.110781755 1.037266892 1.067479732 1.044671546 1.074406136 1.09236773 1.081216337 89051279 endochitinase Photobacterium sp. SKA34 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 0.771602858 0.891042628 0.802779772 0.809313913 407780829 nhh Oceanibaculum indicum P24 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Oceanibaculum;species:Oceanibaculum indicum; 1.199255614 1.22997996 1.168003007 1.192614841 1.193669894 1.238661259 1.1739238 1.184093184 1.150235453 1.206743169 1.175283344 1.188650386 1.170181549 1.157148432 1.151756707 1.189679338 1.220776226 1.181568902 340534500 terc Corynebacterium variabile DSM 44702 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 0.840675219 0.856152499 0.939905344 0.911056413 0.884632628 0.895396881 0.906046383 0.878736904 0.867339009 0.882589824 0.895130568 0.898886383 0.844560542 0.86023531 0.856871557 0.82354567 0.859763566 0.895294951 374578414 phn Bradyrhizobium sp. WSM471 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.80670377 0.840618705 0.826574165 0.846316729 0.865531915 0.900143242 0.858353176 0.831526292 0.866231188 359424660 alkb Gordonia amarae NBRC 15530 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.997292176 0.997807267 0.964395545 0.970034458 0.957596856 0.98527677 0.941606011 0.940033532 0.972075485 0.971099803 0.95725357 0.971190801 0.934720892 0.936346471 0.905987995 0.919442042 0.98136905 1.001004735 164511893 b_lactamase Pseudomonas aeruginosa Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.992809664 0.982087443 0.98258006 0.987981314 0.944042557 0.959445193 0.969706413 0.968356821 1.000828576 1.014499732 0.975390139 1.030579282 0.942122018 0.961690537 0.939631842 0.94553678 0.993266608 0.970498824 356698017 fthfs Clostridium hathewayi WAL-18680 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 0.758639032 0.839253751 0.829236128 0.809770223 0.826341599 0.839965603 227378474 ara Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.96597558 1.162479142 0.919252519 0.843375107 0.923438854 0.797718433 0.839843274 0.818884844 0.835736139 0.795451784 0.828948137 0.816023354 395762917 nitro Janthinobacterium sp. PAMC 25724 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium;species:Janthinobacterium lividum; 0.788812006 0.801976871 0.785188765 0.849312499 302695935 axe Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.812704391 0.860162659 0.798675994 0.835557671 0.834130607 0.877313864 205375151 dehh109 Bacillus coahuilensis m4-4 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 0.841324881 0.823775762 0.840490762 0.804607824 45386201 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.80806357 0.852595548 0.818246882 0.763888072 0.806979561 0.839648368 224943072 ppx Eikenella corrodens ATCC 23834 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella;species:Eikenella corrodens; 1.136433047 1.096064091 1.112918976 1.149462843 1.057477038 1.126058797 1.075193268 1.092947539 1.140486627 1.087641959 1.126780629 1.098155567 1.09523314 1.082732368 1.039222937 1.065597493 1.114666714 1.088613765 335424084 rubisco Salinisphaera shabanensis E1L3A Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 0.957439335 1.001640228 0.955768899 0.966639431 0.945223573 0.969229003 0.924125759 0.94424435 0.953053166 0.974401957 0.96454117 0.971036977 0.951035306 0.963145463 0.898415375 0.9492009 0.99555915 0.999647637 146232579 ppx Dichelobacter nodosus VCS1703A Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Dichelobacter;species:Dichelobacter nodosus; 0.918804221 0.906206118 0.920697815 0.90464774 0.907368977 0.904987793 0.890708627 0.894663205 0.867004415 0.920883148 0.927271824 0.8749493 0.906251943 0.885905752 0.885097916 0.929388463 0.923010308 0.926935515 358242541 cysJ Gordonia araii NBRC 100433 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 1.222376832 1.206848606 1.197789389 1.196856135 1.180469239 1.226874539 1.189036692 1.197548158 1.184367578 1.202218708 1.248361779 1.200776004 1.17864931 1.158492905 1.161733734 1.19161056 1.186882703 1.218020728 307770579 ben_bcla Roseibium sp. TrichSKD4 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 1.269852173 1.283301981 1.249428909 1.283777603 1.302514863 1.308611848 1.243951756 1.237237835 1.270032548 1.251305299 1.27349186 1.328746178 1.253841861 1.172310973 1.166507826 1.211119484 1.288623376 1.204553509 221069363 ben_bcla Comamonas testosteroni KF-1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.823386295 0.819075984 0.796958234 0.822916165 0.828151756 0.838462078 0.823876319 0.832730618 111017537 bphF1 Rhodococcus sp. RHA1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.919135266 0.906645872 0.907085793 0.856970601 0.853871319 0.880477232 0.88162061 0.856395566 0.850445369 0.935402891 0.903061583 0.879376907 0.86667535 0.93349298 1.035505115 0.871017544 0.921407165 1.012025739 157101502 mdh Campylobacter concisus 13826 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 0.973937418 0.947034059 0.850748482 0.936413052 0.9116891 0.879252959 0.907168975 0.86112434 0.843055581 0.84440236 0.792710237 0.875033336 0.885567651 0.832564573 0.900706131 0.895911879 0.915879715 0.908822907 302550562 pectinase (pectate_lyase) Streptomyces viridochromogenes DSM 40736 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 0.784308071 0.809323004 302549732 cmci Streptomyces viridochromogenes DSM 40736 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 0.980343178 0.953105222 0.942542059 0.973336953 0.857531071 0.990270759 0.88270078 0.937089041 0.967889867 0.967108861 0.881235768 0.953026415 0.839718903 0.921928337 0.902951624 0.933900465 0.973896333 1.011052769 118462569 cdh Mycobacterium avium 104 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.412279133 1.38474305 1.345003819 1.369119713 1.377862393 1.411852575 1.334902395 1.338573903 1.341824616 1.361583386 1.350008248 1.370931957 1.358813396 1.336243793 1.342150677 1.348143975 1.35678803 1.356901442 170933874 por_DiC4HB Thermoproteus neutrophilus V24Sta Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 1.524155769 1.486644971 1.479375308 1.469051102 1.457488938 1.512356693 1.476039949 1.471969964 1.444173051 1.443105469 1.46072908 1.464459076 1.441235423 1.443758571 1.444316258 1.477338994 1.480595736 1.449482259 334130996 msmabcd Methyloversatilis universalis FAM5 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 0.956917059 0.989077894 0.951216627 0.997200116 0.965367407 0.909321543 0.964754174 0.971689572 0.974414697 0.957667454 0.934362207 0.981473884 0.947163138 0.881449782 0.880608443 0.938335343 0.97620459 0.962475315 224817502 APS_AprB Thioalkalivibrio sp. K90mix Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 1.136030073 1.151395097 1.125125297 1.142140952 1.123595816 1.16490991 1.124080598 1.129642904 1.121780819 1.125449425 1.096977335 1.140135079 1.073005208 1.101660478 1.059807227 1.087876599 1.121410479 1.117372063 109454943 soxY Roseobacter denitrificans OCh 114 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 0.763647338 0.825758933 0.805642354 0.839123953 0.844155047 0.832507758 0.783856202 0.785344076 0.823570576 364566877 ppx Yokenella regensburgei ATCC 43003 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 1.030977084 1.006008087 1.055494209 1.066827374 1.061849796 1.08238699 1.064039476 1.074590256 1.015333028 1.065896019 1.05180491 1.054445475 1.036073736 1.016825639 0.961330349 0.969100575 1.02487184 1.052467035 91790992 mdla Polaromonas sp. JS666 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 1.032974102 1.094591565 1.034271681 1.173340875 1.007578145 1.030398227 1.033428785 1.054164165 1.020352121 1.028642077 1.030466344 1.214608094 1.019231395 1.031452112 1.004597896 1.023841848 1.038476165 1.04190214 182415898 pme Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.921201737 0.9456114 0.937028393 0.956951429 0.921605135 0.940023607 0.918705362 0.914099434 0.930881632 0.908509259 0.900998739 0.945334932 0.940717587 0.901398601 0.937129276 0.894036404 0.951550384 0.962247261 313105090 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.969218208 0.959717112 0.844326328 0.869921248 0.902137653 0.893181421 0.851335048 0.867352041 0.919823742 0.900829794 0.845524879 0.912921306 0.88122084 0.882156314 0.841951238 0.843314857 0.917786215 0.983902066 29466008 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.112171541 1.075280291 1.056789668 1.039316318 1.024478891 1.068555238 0.976128166 1.029767264 1.067424336 1.047246648 1.016387142 1.066606966 1.031227549 1.025039105 0.97244564 1.033353121 1.085062574 1.053198422 365921717 amyA Cardiobacterium valvarum F0432 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium valvarum; 1.017317575 1.051065811 0.975784521 1.033419308 1.009594044 1.024677339 0.904843813 0.949182417 0.968080615 0.959523193 0.971560166 0.974844074 0.982458862 0.955066703 0.992958741 0.94025026 1.021075357 1.059132378 144901049 urec Magnetospirillum gryphiswaldense MSR-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 0.88924705 0.827709188 0.822187562 0.883404663 0.84780677 0.840511934 0.85669651 0.874532014 0.85076533 0.826887619 0.870637551 0.886770123 0.821712652 219550472 endochitinase Vibrio parahaemolyticus 16 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 1.526537314 1.453826812 1.489321572 1.490205715 1.511645986 1.461396835 1.450557139 1.479831585 1.492716827 1.46889172 1.498424995 1.567781003 1.453381385 1.404971511 1.509218222 1.45441729 1.520152565 1.424757528 328940965 pula Paenibacillus sp. HGF5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.81379013 0.928180984 0.779536528 0.826459021 0.959265925 0.817514459 0.814736328 0.898360529 0.824356735 0.791544932 0.904610564 0.921255492 1.058649584 0.904867158 0.995368894 0.962456621 111618054 ppx Acidovorax avenae subsp. citrulli AAC00-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 0.874788674 0.809129716 0.848175458 0.831415968 1.003439567 0.875164433 0.848267703 0.879184905 313895321 nifh Selenomonas sp. oral taxon 137 str. F0430 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 137; 1.499324018 1.442648426 1.455887485 1.453846067 1.421206543 1.441957562 1.408255563 1.447725408 1.44647774 1.436698404 1.417574894 1.462870408 1.42903689 1.403752551 1.409245359 1.430021434 1.440278391 1.429294227 334564828 urec Corynebacterium bovis DSM 20582 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium bovis; 0.823087056 0.822800843 0.801971859 0.810956222 0.866522747 0.837000948 0.792738301 0.799971321 0.801882216 0.791975213 0.875907632 0.856173889 27353702 tktA Bradyrhizobium japonicum USDA 110 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 0.795575002 0.804519322 0.813485057 0.831276511 114540082 tktA Fulvimarina pelagi HTCC2506 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 1.001528539 0.997002285 0.991695777 1.044721009 0.977520862 1.009335644 0.968172412 0.977271309 0.980568389 0.983015073 0.954274926 1.011449647 0.989730999 0.954084604 0.955921636 0.98735458 1.011666756 0.998024483 177841462 Sir Opitutus terrae PB90-1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.430641011 1.434438432 1.418968276 1.424961984 1.395464677 1.447376922 1.37832939 1.391345236 1.401314563 1.380154786 1.382373654 1.39377026 1.389578326 1.350881743 1.370025986 1.387137575 1.462449126 1.400411809 78358312 CsoS1_CcmK Desulfovibrio alaskensis G20 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 0.811809792 0.838028245 0.847536096 0.80060787 0.83307802 0.827596806 0.805381176 281298851 amyA Prevotella buccalis ATCC 35310 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 1.032713997 1.042008889 1.016213174 1.030143186 0.987022881 1.038524374 0.997791714 0.9705685 1.012392996 1.052709566 1.02899613 1.044695528 0.992137666 1.006366561 0.953125727 0.962601801 1.031197094 1.030779317 46520033 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.87675751 0.878319791 0.888357611 0.832061989 0.936098566 0.924196745 0.899124944 0.87429317 0.921692236 0.915754387 0.881706543 0.891445157 0.880141517 0.886221041 0.808507975 0.87531558 0.951106565 0.961149139 209504514 ara Burkholderia sp. H160 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.162060079 1.116164687 1.116345911 1.088727868 1.113946459 1.147735602 1.044574775 1.085854358 1.047146803 1.120504457 1.049449447 1.073599681 1.096449218 1.075680518 1.147416407 1.073240592 1.112475354 1.148583078 381372402 chitinase Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.047234807 1.074104802 1.055197875 1.039877256 0.98599747 1.046622041 1.005022938 1.037455527 1.051031766 1.055966339 0.984790105 1.037449753 1.008515217 1.021506796 0.947894128 0.997585945 1.045181333 1.07445446 342859675 cutinase Mycobacterium colombiense CECT 3035 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 1.088090343 1.052534273 1.05547359 1.029787611 1.022957533 1.074960786 1.022169584 1.084036788 1.07148248 1.055264074 1.047917737 1.035321074 1.01311559 0.978637381 0.95280021 1.001364054 1.05742583 1.054891743 347819363 urec Verminephrobacter aporrectodeae subsp. tuberculatae At4 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter aporrectodeae; 0.865416927 0.886024663 0.82093036 0.922479521 0.841962918 0.866040453 0.841769592 0.819678492 0.848173761 0.852577101 0.873918768 0.824854286 0.827501761 0.833435177 0.872425541 0.90121032 119485504 axe Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.855401501 0.816723899 0.917963991 0.835237113 0.812994479 0.818302004 0.801941177 0.901463837 0.840202843 282878035 fthfs Prevotella buccalis ATCC 35310 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 0.827273194 0.816230107 0.938486834 0.888446265 0.888208219 0.821378876 0.841006212 0.834567729 0.968792726 0.877381184 0.817497936 0.782487839 26278728 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.786493359 0.804329265 164456044 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.878547407 0.880454184 0.893784975 0.932262793 0.842469556 0.978411678 0.8500756 0.806355491 0.877847441 0.900880347 0.940343446 0.928920987 0.870013056 0.894273974 0.903451679 0.923461076 63081872 nosz unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.993018674 1.00603668 0.966111707 1.000005976 0.987678578 0.999160967 0.949345077 0.993143812 0.966901627 0.979558019 0.950110947 0.981411391 0.970905711 0.945421196 0.922852321 0.972713111 1.035661061 1.007726463 340528433 acetylglucosaminidase Amycolatopsis mediterranei S699 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.539646765 1.496158508 1.477820856 1.478970576 1.446816696 1.518127793 1.456283303 1.469846277 1.466146583 1.467268021 1.457463299 1.456632056 1.429622973 1.459684959 1.427329852 1.470803261 1.510269297 1.474868645 189198832 rgl Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.92348919 0.86647757 0.880121343 0.888075152 0.905629354 0.810841812 0.865663671 0.867297529 0.937391449 0.842937041 0.86115938 0.894894498 0.865388365 0.83210377 0.929323531 0.86669967 154157406 b_lactamase Parvibaculum lavamentivorans DS-1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 1.046199581 0.970242942 0.966342403 1.022512836 0.912488041 0.957056822 0.920125719 0.978503363 1.007898931 0.945406374 0.918360183 0.986988156 0.881275114 0.914875663 0.853775833 0.925620971 0.98716013 0.985450713 74420896 TIM Nitrobacter winogradskyi Nb-255 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 0.780754093 0.825763623 260218053 ppk Cronobacter turicensis z3032 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 0.812917135 0.790157859 74053782 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.165206173 1.149604096 1.171708256 1.147409919 1.117194819 1.197557207 1.116004481 1.203510808 1.14756565 1.133151809 1.158169195 1.149093763 1.118149697 1.123445574 1.104680434 1.121149399 1.162926681 1.136963543 323502060 bphF1 Clostridium symbiosum WAL-14673 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium symbiosum; 0.861818542 0.862621471 0.876582894 0.781528844 0.837542585 0.801820235 0.889990209 0.82503256 0.808652147 0.812086098 0.93380784 387860834 nahf Pseudomonas sp. C6 (2012) Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.805615334 0.930314643 379719045 urec Paenibacillus mucilaginosus 3016 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.768921323 0.86652558 0.833325898 0.833598432 0.864836805 0.831126663 0.844151581 0.834219742 0.822375869 0.855965134 0.802119162 0.882792418 0.85180503 0.831060233 0.835921249 0.855528542 0.879811255 0.896364692 392844327 badh Rhizobium leguminosarum bv. viciae USDA 2370 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.152700984 1.169279339 1.156033489 1.164525817 1.163508526 1.169686061 1.122262163 1.212840971 1.13930572 1.137145218 1.17070419 1.178273915 1.184799481 1.141607248 1.160301976 1.16098918 1.188109305 1.141124377 37900180 rubisco Synechococcus sp. OH2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.820945634 0.957599288 0.833126489 0.821988869 0.818922257 0.811124522 0.830295683 0.84517525 0.847207417 139478509 mer uncultured soil bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 0.860433305 0.810492049 0.835822601 0.885321814 0.857054529 0.87989372 0.850938791 0.79519401 0.878461035 0.798667236 0.8137283 0.815675616 0.843542154 0.853596445 0.899866009 405555067 cpna Cecembia lonarensis LW9 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Cecembia;species:Cecembia lonarensis; 0.959621955 0.906693254 0.96490922 0.923800227 0.975417598 0.925693424 0.953505227 0.928827154 0.940215757 0.920449311 0.904980167 0.891929239 0.91149749 0.902305819 0.845371928 0.893613346 0.90445254 0.925329517 86557794 ccmM Synechococcus sp. JA-2-3B'a(2-13) Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 1.117238047 1.15639877 1.089070351 1.149366682 1.135163373 1.156447943 1.149487083 1.117520614 1.117217673 1.14384211 1.174336949 1.159436373 1.113789494 1.087339991 1.159376412 1.094905046 1.151011293 1.127079178 299132735 dehh109 Afipia sp. 1NLS2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 1.350358568 1.348884487 1.341296756 1.375607612 1.363363663 1.356149599 1.352278279 1.392125259 1.346289171 1.330032973 1.346370746 1.368750262 1.336309917 1.316931856 1.357966338 1.335323534 1.353258177 1.305660112 254447423 FBP_aldolase gamma proteobacterium HTCC5015 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.833646051 0.870524078 0.890563661 0.885030876 0.90608386 1.008351327 0.863562338 0.960254919 0.824136721 0.997387492 0.948470501 0.899663673 0.958016621 0.965158739 0.906485267 0.933918021 0.991604462 0.954025967 119466975 p450aro Neosartorya fischeri NRRL 181 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 0.880752577 0.881090912 0.900116887 0.89643257 0.913420555 0.902949677 0.917927898 0.889174345 0.885395232 0.886105484 0.822738368 0.869349864 0.818281666 0.861352129 0.897064051 0.876291783 0.926367654 336295939 amyA Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.848089425 0.816960035 0.811482715 0.942118366 0.785234823 209907898 dmsa Enterobacter cancerogenus ATCC 35316 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 1.078913044 1.06565106 1.039139638 1.025707541 1.010995505 1.059395693 1.012335376 1.027732651 1.030065674 1.025884839 1.069945948 1.014080904 1.027028442 0.989903206 1.003589176 0.976452137 1.032199844 1.037570919 160917418 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.918868613 0.904658947 0.954034171 0.935259084 0.933588993 0.975144047 0.909130531 0.889081063 0.887956908 0.937585524 0.868811206 0.917455245 0.868187862 0.928997845 0.87334217 0.993030914 0.934148965 82571043 ara Bifidobacterium longum Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 0.816234629 0.80621968 0.785623704 0.805294846 34582632 exoglucanase Trichoderma viride Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 1.386735948 1.387431021 1.365992886 1.388436751 1.348574013 1.364064169 1.35560347 1.37848248 1.342477874 1.330624074 1.352060847 1.37160361 1.323776921 1.31912274 1.329210134 1.344802599 1.359982415 1.333812716 158316512 mhpa Frankia sp. EAN1pec Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.12514216 1.126390818 1.121637718 1.135407845 1.105312859 1.165508411 1.093395243 1.099513646 1.113483595 1.108097613 1.115612668 1.108940129 1.089734045 1.116942313 1.083692802 1.097378507 1.130877507 1.133723644 139003422 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.142869991 1.20426808 1.18218819 1.157729352 1.215555678 1.312445271 1.101071879 1.042206223 1.111231122 1.178818982 1.311842952 1.211063472 1.078268074 1.056763298 0.998824404 1.186321204 1.279689511 1.113282123 89113925 glx Phanerochaete chrysosporium Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 1.212821551 1.1819697 1.194470324 1.148167807 1.166103863 1.1891554 1.099433594 1.133442085 1.158301319 1.179066541 1.163297288 1.182606152 1.181340532 1.184393503 1.162490182 1.174587635 1.183566901 1.214225899 133910474 atzb Saccharopolyspora erythraea NRRL 2338 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.958966122 1.020603827 0.887507098 0.949850258 0.8986638 0.888938751 0.885846771 0.903015974 0.952600256 0.966193091 0.897375111 0.946993349 0.84233896 0.915880981 0.818070666 0.94075549 0.945888038 0.957913532 220723824 pme_Cdeg Postia placenta Mad-698-R Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 0.884022701 0.92802392 0.900561746 0.911130026 0.90726609 0.919063554 0.854874913 0.880724018 0.900648502 0.889958567 0.878601317 0.871675855 0.889555843 0.875344085 0.87268388 0.879804699 0.91807353 0.93082889 399534463 mhpa Amycolatopsis mediterranei S699 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.930036537 0.934560984 0.895162072 0.918272642 0.884150575 0.888257009 0.860424297 0.867326069 0.807155859 0.865999024 0.867343426 0.936470956 0.886092376 339498729 pula Spirochaeta caldaria DSM 7334 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema caldaria; 1.243202145 1.141815826 1.127642241 1.123401429 1.245185439 1.188716779 1.132312763 1.150576707 1.158218707 1.139955547 1.179287606 1.190190179 1.132425251 1.105140084 1.154777629 1.145731678 1.132392181 1.140366251 283481909 mcra uncultured methanogenic archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 1.02078342 1.042241785 0.995053998 1.021011706 1.023577678 1.073841088 1.039816838 1.017800684 0.986888855 1.017907161 0.988148419 1.033332794 0.973897936 0.969026959 0.938895362 0.983634269 1.024739385 1.050275643 157284130 napa Sulfurimonas paralvinella Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas; 0.83937181 0.896889803 0.826458538 0.872840792 0.84332959 0.92030613 0.851455833 0.845972173 0.855536814 0.885616558 0.81373828 0.844264881 0.843995285 0.865750007 0.859617557 0.803101831 0.902623034 0.860632008 312200115 ppx Frankia sp. EuI1c Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.881729735 0.890500037 0.929492959 0.956310043 0.909003305 0.897916739 0.933147872 0.950259725 0.906583839 0.869562103 0.933331452 0.886023539 0.836973437 0.823464492 0.809990272 0.892196582 0.918131377 50541861 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.786857729 0.786071527 0.81565164 0.82703287 38427032 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.928319551 0.905999558 0.99566082 0.924897636 0.964975987 0.979583191 0.891555234 0.928700344 0.947655086 0.910962013 0.989017692 0.956789583 0.929285632 0.90616934 1.022666746 0.926939912 0.953575212 1.034756381 254500307 nifh Labrenzia alexandrii DFL-11 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 1.079761063 1.126224343 1.084858372 1.079193252 1.071674471 1.099471346 1.039869409 1.059140588 1.077598712 1.071408243 1.078493362 1.082736852 1.051496783 1.061556183 1.080156588 1.0603253 1.120578757 1.111732045 114763950 urec Roseovarius sp. HTCC2601 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.09917193 1.140159356 1.090723202 1.087305939 1.084483353 1.109435272 1.046213853 1.041895621 1.084415562 1.053474585 1.070575437 1.06009526 1.052585508 1.041007619 1.019415802 1.022854395 1.107641144 1.078077554 383794999 linc Fervidicoccus fontis Kam940 Organic Remediation Pesticides related compound NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Fervidicoccales;family:Fervidicoccaceae;genus:Fervidicoccus;species:Fervidicoccus fontis; 0.970379807 1.016121052 0.997466866 0.981928052 0.968757866 0.941070997 0.958497214 0.96707075 0.986781121 0.906713766 0.936591522 0.971170315 0.913934058 0.962025061 0.967612487 0.925215409 1.078807923 1.004556392 146405349 mdlc Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.555045277 1.541404321 1.517689654 1.515421835 1.519148007 1.539930269 1.498923511 1.5097345 1.513569491 1.486167389 1.514333259 1.5296034 1.4985558 1.482161694 1.504104541 1.499979172 1.539910009 1.477380342 118424502 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.99846378 0.992076753 0.999996509 1.047348225 0.990695993 0.983429644 0.985890161 0.997072288 1.012591823 0.981415841 0.976753124 0.986884123 0.967148175 0.938603593 0.953139052 0.948167961 1.033172979 0.991234637 171705277 phytase Yersinia frederiksenii Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 1.183093945 1.183231617 1.162529279 1.155622568 1.134250736 1.196180981 1.136387503 1.169908582 1.161206177 1.166616796 1.135442815 1.178055556 1.114244715 1.135409593 1.091389739 1.143185492 1.165384607 1.155987178 77379125 mer uncultured bacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria; 1.218870266 1.19981826 1.195108575 1.149439493 1.169828096 1.198806976 1.150845599 1.126491194 1.175376434 1.153512676 1.205194881 1.165332748 1.192150611 1.13035423 1.125082352 1.118777113 1.187909726 1.182563034 357423825 ppx Azospirillum lipoferum 4B Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 0.77133429 0.785349052 0.815985201 0.871248164 0.82629351 0.807004058 0.828269806 0.831302519 0.829367546 0.844673054 0.880068258 56678835 pgk Ruegeria pomeroyi DSS-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.236636097 1.212891549 1.205119474 1.231709078 1.203708807 1.25844916 1.178763043 1.169617091 1.210918007 1.162455404 1.174844293 1.18252515 1.159579371 1.149623105 1.136298081 1.181734278 1.232399248 1.219470561 126703742 FBP_aldolase Rhodobacterales bacterium HTCC2150 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.877468081 0.910854744 0.838038578 0.823469359 0.855333235 0.888387042 0.820345379 0.832567629 0.892268252 0.867496401 0.831386609 0.852616245 0.851376814 0.847625308 0.93250738 0.838103142 258592928 gdh Candidatus Methylomirabilis oxyfera Nitrogen Ammonification NA superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 0.887598735 0.868860602 0.910401103 0.910417171 0.924675804 0.90368115 0.895029696 0.914321996 0.88466136 0.921411915 0.864493503 0.876839339 0.913949757 0.887553272 0.89318903 0.874931291 0.90004488 0.91667989 357428395 nirb Azospirillum lipoferum 4B Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.336117358 1.323121265 1.309184557 1.326342868 1.315137546 1.32396116 1.278778904 1.301561014 1.323387045 1.282369339 1.274801567 1.320974526 1.28441906 1.256241131 1.283810215 1.2820059 1.323696228 1.298585895 291513742 amyA Alistipes shahii WAL 8301 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes shahii; 0.928409228 0.897634367 0.908857804 0.913586105 0.86887143 0.927293988 0.877857679 0.863900366 0.888169312 0.895015209 0.904081302 0.848882632 0.856400075 0.839073107 0.887684846 0.913209518 0.90130165 0.94668844 333988912 urec Mycobacterium sp. JDM601 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.024660518 1.068434294 1.059246064 1.012368969 1.048689369 1.056890751 1.031732176 1.008592967 1.021444653 1.035857527 1.07693153 1.022322185 1.038281666 1.017288427 1.002931114 1.031064858 1.02716545 1.042325876 152966388 nitro Kineococcus radiotolerans SRS30216 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 0.981714402 0.94776865 0.970083709 0.994529895 0.99341359 0.931825924 0.926702252 0.934616084 0.972101581 0.937810239 0.922576602 0.969140201 0.976062539 0.893048034 0.928134409 0.937990222 0.985043519 0.942168617 95025845 pec_Cdeg Emericella nidulans Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 0.965569822 0.869304069 0.897838953 0.905652899 0.855807687 0.870110739 0.836979561 0.956042258 0.894429528 0.82887179 0.823483924 0.827181515 0.804605855 0.804712549 0.876027178 0.849063946 357590695 pcag Corynebacterium nuruki S6-4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 0.970100323 0.969930569 1.008400183 0.977203756 0.899370704 0.95018105 0.908572307 0.91129756 0.977582794 0.940725153 0.913746912 0.880287031 0.887541702 0.926139259 0.863173198 0.893512935 0.965348377 0.955924362 112463925 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.357746746 1.338091148 1.351489186 1.39263656 1.355177897 1.353880892 1.364231485 1.38742557 1.370672172 1.3437422 1.344956322 1.393535979 1.335030692 1.310265677 1.336946456 1.352940251 1.352500643 1.326169855 55772793 SoxC Thermus thermophilus HB8 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 1.003186337 0.978592919 1.051118648 1.039113922 0.995793122 1.006744596 0.993022915 1.028410981 1.020522238 0.980593885 0.978325739 1.021502323 0.940183713 0.961582819 0.988208086 0.994071464 0.991149493 1.003113155 159475477 actin_Viridiplantae Chlamydomonas reinhardtii Other Phylogenetic NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 0.99567979 0.957932881 0.95031043 1.001829859 0.970525985 0.965033676 0.962881838 0.959905565 1.002285556 0.981523516 0.941403039 0.973479191 0.938359986 0.955078167 0.936574705 0.942622923 0.972926342 0.981171655 344342075 ccmL Thiocapsa marina 5811 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 1.269740941 1.245564597 1.233708416 1.273715031 1.258076406 1.285967662 1.237343705 1.255821724 1.247361357 1.198215084 1.204813742 1.244354086 1.224248868 1.186236473 1.236661779 1.210882354 1.274801181 1.229376067 344212728 amyA Haloarcula hispanica ATCC 33960 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula hispanica; 1.277006334 1.262586706 1.239997244 1.268421119 1.205975082 1.246823355 1.211433597 1.248339129 1.252405308 1.222713561 1.22603677 1.241519478 1.205789815 1.18769974 1.182441548 1.213861085 1.255678101 1.241837166 383937093 chitinase Rheinheimera nanhaiensis E407-8 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 0.955987823 0.925855996 0.910946555 0.991150407 0.927690273 0.952607128 0.94903714 0.969701555 0.965931955 0.889373131 0.910799339 0.941278642 0.909072022 0.956034281 0.86983168 0.902096994 0.976843309 0.903843624 296270821 amyA Thermobispora bispora DSM 43833 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 1.195002399 1.170079226 1.162488394 1.173801175 1.149528921 1.178267104 1.156742353 1.174713792 1.15489485 1.144654511 1.148777057 1.158165568 1.16141074 1.130771407 1.148706766 1.149012107 1.200308152 1.157616021 114192500 lactase_fungi Aspergillus terreus NIH2624 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 0.826552046 0.873403109 0.854316969 0.81753444 0.888860933 0.862968746 0.817430856 0.810095371 0.822437044 0.865972523 0.83639024 0.813648508 0.804923817 0.878313575 373547273 xylj Mycobacterium tusciae JS617 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 0.858919967 0.868426793 0.866781595 0.883175422 0.806379589 0.822299742 0.784918882 0.787594817 0.909750531 0.828332695 0.800462444 0.82672011 0.869541371 0.835088087 56799047 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.60548044 1.564943707 1.54564791 1.564445106 1.524633423 1.598241514 1.524599763 1.547826233 1.542310881 1.537840318 1.531816033 1.547544782 1.520352592 1.526550423 1.518592996 1.526937415 1.5839571 1.541400951 124262382 chnb Methylibium petroleiphilum PM1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 1.002341884 0.989928667 0.999619686 1.053077896 1.043623128 0.998575967 1.018759103 1.031717358 1.023382764 0.988937988 1.014052527 0.988919207 0.956822025 0.918343543 0.941637929 0.953849242 1.006226599 1.020349707 299793943 mhpc Amycolatopsis mediterranei U32 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.080424784 1.04578587 1.056414891 1.099955295 1.060667541 1.077767387 1.026008892 1.077462263 1.085412559 1.054442544 1.041379828 1.074014811 1.050068883 1.073841719 1.051640833 1.044783649 1.06466617 1.03450029 345000618 chitinase Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.779276499 0.806779401 0.824573894 0.815225743 259652647 TIM Ruegeria pomeroyi DSS-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.395778953 1.361301168 1.354698434 1.381052325 1.33454166 1.380956324 1.338814742 1.360307825 1.350602714 1.322169361 1.35073578 1.337793858 1.330192029 1.30695714 1.268381014 1.329672029 1.381129381 1.33799946 289208045 CsoS2 Thioalkalivibrio sp. K90mix Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 1.020805522 0.982770539 1.045705942 1.099336212 1.021504053 1.046522975 1.017240875 1.066497912 1.079959672 1.026913091 0.996078033 1.052715343 1.017471624 1.01075612 0.982852406 0.997880224 1.051749891 1.02657832 53828149 dsra uncultured Desulfovibrio sp. Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.060409369 1.043689702 1.064803881 1.067153041 1.020605332 1.078250244 1.004043947 0.98886705 0.995567568 1.01067603 0.975338894 0.989435339 1.020187718 0.998024362 1.015791038 0.986911012 1.071263476 1.049173432 302435484 xylg Streptomyces sp. AA4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.835200013 0.829034286 0.810700477 0.878679007 0.794292018 0.814085284 0.830020251 0.838866453 0.8653817 116090307 aoxb Ancylobacter sp. OL1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Ancylobacter; 1.058357292 1.043892732 0.978095499 1.033365996 0.992086415 1.059917364 0.994088123 1.005905207 1.033710377 1.039488623 1.045288988 1.0262634 1.013386326 1.012802426 0.984541238 0.9991495 1.059796592 1.059357905 90201441 arsc Mycobacterium vanbaalenii PYR-1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.009615154 0.952471997 0.997512228 1.022918721 0.994083666 1.001639818 0.99577774 1.003465132 1.002238847 0.979329949 0.983425323 0.988152466 0.958573612 0.917315428 0.933180892 0.953241807 1.003275982 0.992400964 219861028 rgl Arthrobacter chlorophenolicus A6 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.938978284 1.023658622 0.89148841 0.91240932 0.940160989 1.004520091 0.906460534 0.929717273 0.962495203 0.968579959 0.894612753 0.958582762 0.929472943 0.913546193 0.912477352 0.930467559 0.952755916 1.042754245 167564754 phn Burkholderia oklahomensis EO147 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 1.111890163 1.133598028 1.123308023 1.129938806 1.119009337 1.120343095 1.130201632 1.122136923 1.121049495 1.134689205 1.122145823 1.138737939 1.091557933 1.073571522 1.053398332 1.075551883 1.150339549 1.138286199 151302317 aps_apra sulfate-reducing bacterium DSM 14454 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.890145474 0.818472274 0.86940374 0.835499322 0.845373627 0.808840676 0.855567953 0.879188896 0.854857011 0.851414844 0.821499815 0.906651459 0.811101878 0.80038102 0.826456786 0.864673885 0.859514056 308226367 amyA Oscillochloris trichoides DG6 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 1.180709198 1.07735417 1.0575782 1.109838028 1.051177039 1.0756161 1.053257159 1.088192122 1.076039856 1.047440618 1.034921909 1.061137645 1.0331442 1.041627166 1.039310481 1.059215572 1.094453389 1.090121264 334730693 linb Ramlibacter tataouinensis TTB310 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 1.204822717 1.132695872 1.122108234 1.133107835 1.118078202 1.118314688 1.075149188 1.159688742 1.132169477 1.109471773 1.160407265 1.15619986 1.105032577 1.111698465 1.075296016 1.135241864 1.13641813 1.12537007 358637761 ppx Azoarcus sp. KH32C Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.041237739 1.064005841 0.995267583 1.035914275 0.980480021 1.033781916 1.010202556 0.995734837 1.025282198 1.021071448 0.967979765 1.011147968 0.946815055 0.994500183 0.90177701 0.934301533 1.023426865 1.055533912 385183957 xylj Burkholderia sp. Ch1-1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.335095649 1.320016576 1.279884154 1.295957678 1.281454592 1.33117262 1.275980832 1.291240789 1.297954456 1.285391183 1.272249007 1.294568845 1.240873157 1.273413811 1.261974697 1.287280974 1.308224491 1.291898266 384059394 ppx Acetobacter pasteurianus IFO 3283-26 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 0.826123307 0.815279795 0.918609175 0.96859959 0.949987395 0.848153753 0.898772232 0.93096326 0.93323104 0.916661046 0.907797768 0.890539226 0.878528403 0.862472653 0.901805649 0.94572639 0.850301569 0.868155113 302678239 p450aro Schizophyllum commune H4-8 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.945578054 0.963737419 0.92539781 1.008928012 0.965491499 0.962943528 0.955481604 0.965893532 0.945595327 0.970692179 0.945360691 0.893671542 0.895754391 0.932746575 0.986480737 0.959043784 298273079 pme Bacteroides sp. D22 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 0.992358797 0.998668972 0.950879518 0.969351533 0.954083684 0.995653029 0.970940013 0.956144333 0.997567406 1.015341798 0.975006396 0.99253628 0.966592727 0.939574874 0.923645088 0.976788633 1.001075999 0.981455568 374990358 glucoamylase Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.125295347 1.111850645 1.152538472 1.142081945 1.102309005 1.096130448 1.110541771 1.120170094 1.102001921 1.10341139 1.092182389 1.11208182 1.063860426 1.037570784 1.023592257 1.082332693 1.129230311 1.09204788 403719106 nhh Kineosphaera limosa NBRC 100340 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Kineosphaera;species:Kineosphaera limosa; 1.127027796 1.12338295 1.092210767 1.124808709 1.077862329 1.134719592 1.100234907 1.092727126 1.098068958 1.109256156 1.060600678 1.094516983 1.043474066 1.063141874 1.001907774 1.026037977 1.104617383 1.105823485 291565753 FBPase Arthrospira platensis NIES-39 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 0.813258905 0.801815045 21219419 dehh Streptomyces coelicolor A3(2) Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.067792937 1.087776613 1.072058154 1.084126798 1.063721353 1.091999789 1.045558977 1.038765044 1.059111697 1.083384223 1.014618621 1.031885727 1.014707636 1.047931031 0.984135788 1.00655252 1.074723503 1.08963456 219945071 exaa(moxf) Methylobacterium nodulans ORS 2060 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 1.062638033 1.051978537 1.045559065 1.092537847 1.062309425 1.036577313 1.052685166 1.056325381 1.058441202 1.04816368 1.018095441 1.065339347 1.033979093 0.992519888 0.97463864 1.019293965 1.051451348 1.019967239 50950653 xyla Leifsonia xyli subsp. xyli str. CTCB07 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 1.171978854 1.162956912 1.163073391 1.166118343 1.141584266 1.178093315 1.121644821 1.129923191 1.151590055 1.176866729 1.149292943 1.146547718 1.123546094 1.167318237 1.079453743 1.133846455 1.175429671 1.17511349 151424034 sucD Sulfurovum sp. NBC37-1 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 0.922402345 0.803706618 0.820302026 0.802568558 0.845505634 0.903521502 147829218 xylanase Clavibacter michiganensis subsp. michiganensis NCPPB 382 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 0.872239023 0.876421287 0.887206945 0.870270712 0.866448098 0.876513972 0.877736603 0.857097066 0.880000098 0.943729404 0.904657903 0.877635682 0.827637631 0.888023337 0.809187322 0.879708528 0.903845232 0.931853732 333604378 amyA Paenibacillus sp. HGF7 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.915679538 0.912816431 0.934246853 0.970755806 0.935623238 0.933543479 0.92250333 0.957337955 0.983026658 0.976604452 0.896240812 0.969558559 0.911661614 0.896504688 0.857512095 0.846574885 0.949314968 0.975800713 311888478 bphd Rhodococcus equi 103S Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 1.088306263 1.051170669 1.098023848 1.059737807 1.027280321 1.044488025 0.989859029 1.015264737 1.036986368 1.049402477 1.055016345 1.023513482 1.043200128 1.030122903 1.00608176 1.039940289 1.096344713 1.048337074 40745790 nagg Aspergillus nidulans FGSC A4 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 0.775463779 0.837445813 0.819312926 0.835636239 0.866693453 0.819441008 0.822067935 0.83373442 0.789837225 0.849796871 0.818196538 0.811005203 0.877214842 0.795121011 0.84821749 0.777003472 0.832884471 260623477 RgaE Bacteroides finegoldii DSM 17565 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 1.173591934 1.150149107 1.137760899 1.222316207 1.131841214 1.130410252 1.152336429 1.16732385 1.197282497 1.161128074 1.142658251 1.164167537 1.116004168 1.135440418 1.120496996 1.107062451 1.115356829 1.155958332 364569300 ccmL Hafnia alvei ATCC 51873 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 0.953526291 0.972893494 0.920730759 0.95868929 0.919986559 0.983137615 0.935693563 0.934460081 0.987430862 0.933964939 0.919790154 0.934164045 0.92601736 0.878703752 0.915850145 0.872588632 0.983546227 0.979001958 295429836 pme Caulobacter segnis ATCC 21756 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 1.178716638 1.15620226 1.160701015 1.158595172 1.180236683 1.163228036 1.155265785 1.175771257 1.176334181 1.155045186 1.170871329 1.187706086 1.158459491 1.134496773 1.132567795 1.14495076 1.159625195 1.157389483 150029194 tktA Sinorhizobium medicae WSM419 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 1.337479622 1.306115841 1.284510864 1.312143541 1.277311219 1.297251931 1.276563391 1.307029102 1.298239424 1.296314558 1.268992457 1.319795297 1.252091877 1.257797824 1.280057153 1.270813559 1.303867928 1.270222168 164456102 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.004710073 0.990013011 0.989514154 0.98078403 0.993781903 0.970642876 0.984806164 0.9590178 0.999520659 0.994950101 0.967899888 0.953722188 0.991031226 0.928605373 0.947585362 0.956361334 1.002670213 1.002272019 330998750 tehb Parasutterella excrementihominis YIT 11859 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Parasutterella;species:Parasutterella excrementihominis; 0.957514833 0.909589102 0.979208835 1.035872671 0.946363435 0.97422106 0.956825588 0.945217332 0.959153254 0.9489758 0.919603749 0.979610327 0.921849866 0.912396164 0.903540899 0.920485637 0.958361976 0.965840341 259344781 GAPDH_Calvin Silicibacter sp. TrichCH4B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.980726878 0.967172967 0.960903731 0.972437153 0.93704195 0.984736784 0.939162956 0.962786319 0.976710123 0.959944436 0.954006171 0.96172829 0.941488582 0.941679632 0.920539129 0.907646001 0.969809539 0.975553953 307595865 mdh_DiC4HB Vulcanisaeta distributa DSM 14429 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 0.791584582 0.82941567 0.82660671 0.837807446 229323920 vdh Rhodococcus erythropolis SK121 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.078717813 1.07752972 1.051564361 1.070917257 1.066722671 1.083007822 1.035465815 1.056543554 1.073055829 1.019066815 1.038019475 1.081642565 1.034354409 1.005216646 1.024268119 1.013734391 1.091594061 1.046622767 209486804 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.941703063 0.879315403 0.981613404 0.991542979 0.919538641 0.919113482 0.953309506 0.95254983 0.972423991 0.908556229 1.1193404 0.978852941 0.900419657 0.885840387 0.900044731 0.904636859 0.942947405 0.931750446 323137710 ppx Methylocystis sp. ATCC 49242 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 1.132164181 1.127406222 1.110836863 1.138155804 1.136762715 1.162508488 1.152278911 1.119888586 1.109100597 1.141519079 1.150330036 1.144419944 1.138361502 1.106718881 1.119315996 1.138137216 1.133011907 1.111583556 407788393 one_ring_12diox Celeribacter baekdonensis B30 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 0.856201202 0.82706055 0.853679404 0.855921359 0.796758938 0.850710194 0.857390497 0.837470897 0.82927382 0.847427487 0.824513297 0.803077014 0.809951584 0.846705559 0.841943246 0.796013502 0.808019619 359423229 gdh Gordonia amarae NBRC 15530 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 1.015589336 0.994980426 0.920553299 0.984081607 1.064179054 1.007530643 0.978846927 0.963413482 0.967920668 1.012007448 1.000138709 0.977617133 0.948482449 0.952132558 0.930715619 1.002432378 0.988120272 1.001598685 257064787 fthfs Slackia heliotrinireducens DSM 20476 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 0.921304648 0.944038671 0.909818174 0.928506769 0.896047155 0.910716174 0.84342008 0.932954416 0.875132154 0.885000008 0.879256101 0.886908229 0.859724737 0.909546023 0.86526284 0.871767738 0.906481031 0.935970607 262026233 PRI Vibrio mimicus VM223 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 0.789416365 1.107519741 1.045227508 0.960429842 0.801064492 1.000816266 0.82211056 0.862060747 0.830821965 344223831 tktA endosymbiont of Riftia pachyptila (vent Ph05) Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 0.785237916 0.825331146 0.82705854 0.79981933 378747720 aps_apra uncultured Nitrospirae bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Nitrospirae; 0.94515348 0.943634621 0.876729906 0.911962561 0.854905556 0.876959119 0.84998419 0.870648457 0.874105094 0.853811679 0.844408419 0.892515264 0.848304459 0.823910285 0.880775844 0.915350303 0.906137076 118730375 atzb Delftia acidovorans SPH-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 1.223058348 1.107498881 1.118461941 1.172308648 1.133141065 1.140203771 1.129606368 1.167405541 1.122901942 1.119637003 1.09018923 1.144584635 1.088133026 1.076225351 1.071262025 1.081611236 1.150556726 1.166156854 289529770 mdlc Natrialba magadii ATCC 43099 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 0.763370513 0.796566193 0.825193977 0.852322061 0.824194796 0.908039944 0.848848805 0.788925608 0.827683999 0.806877896 0.796319468 0.906639892 257785190 4hbcd Acidianus infernus Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Acidianus; 0.887487084 0.82762548 56313029 ben_bcla Aromatoleum aromaticum EbN1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 1.317114986 1.297954385 1.314899963 1.308916673 1.290238929 1.326440559 1.281073471 1.30504503 1.401081087 1.269437447 1.299888083 1.302404373 1.275986495 1.237928354 1.340365652 1.298200294 1.349456404 1.295229157 16081843 gdh Thermoplasma acidophilum DSM 1728 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma acidophilum; 1.049104048 0.988556327 0.986714972 0.996473632 0.974733828 0.970690775 0.944966207 1.009061857 1.021634935 0.988644206 0.999134138 0.978278218 0.949936844 0.986216856 0.940946231 0.978195539 1.020123151 0.994194593 167772488 amyA Anaerotruncus colihominis DSM 17241 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 0.966348876 0.967272094 0.952083035 0.999863189 0.968928115 0.966660374 0.957815469 0.952070163 0.95962484 0.957581029 0.945573032 0.960809333 0.969597308 0.928201868 0.944795139 0.964663147 1.008792869 0.952485503 359840651 chitinase Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 1.085151392 1.055831044 1.048458326 1.069739496 0.996470537 1.080764002 1.030186597 1.036519481 1.080622327 1.053076723 0.974060766 1.04665849 1.062600157 1.014325388 0.947013275 1.020286439 1.075175929 1.075662573 6468411 pgk Pseudomonas sp. 'TAC II 18' Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.003057795 0.974994118 0.957259442 1.020403688 0.983799599 0.962923881 0.984543752 0.965423455 0.996479931 1.019976666 0.96256998 1.001119295 0.96019285 0.877541925 0.897998664 0.891317359 0.987859461 0.962694656 251789055 xylanase Dickeya zeae Ech1591 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 0.795883916 0.800167968 0.810755236 0.800019447 0.816149005 0.834862386 0.831215391 0.808260595 0.812617852 0.836360933 319783888 b_lactamase Mesorhizobium ciceri biovar biserrulae WSM1271 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 1.109466376 1.10765158 1.054210724 1.055025642 1.051371395 1.005410304 1.010159078 1.051003505 1.032823258 1.045514849 1.020220875 1.072648633 1.004710362 0.999489484 0.989250737 0.972220069 1.049554468 1.026336762 389932116 ppx Burkholderia terrae BS001 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.816566588 0.848857589 0.809614411 0.822482799 0.824503298 0.819955975 0.813257602 0.79662603 0.841068864 237885398 alkb Micromonospora sp. ATCC 39149 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 0.97737143 0.86372834 0.968835107 1.002257447 0.983903805 0.961754195 1.011364266 1.003665632 0.978146431 0.929016097 0.927818377 0.937035746 0.922394708 0.878332676 0.83096888 0.914593286 0.956007797 0.944872745 310763282 fccab Achromobacter xylosoxidans A8 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 1.057677833 1.025159632 1.0229447 1.059115954 1.069183175 1.042013915 0.938783631 1.012008269 1.028561594 1.024693976 1.004308731 1.030651444 0.998302758 0.947598162 0.959094204 0.970927258 1.068202895 1.034049181 95109326 nitro Pseudomonas Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 0.959926546 0.939620641 0.93070787 0.973235902 0.927366204 0.968209273 0.927506965 0.904984271 0.934125073 0.909372013 0.951846021 0.936781017 0.870140874 0.90434331 0.919827127 0.886521294 0.988040634 0.95483223 330688042 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.036725645 0.982209554 0.978504995 0.998976209 1.040346577 1.02428798 0.987989227 0.958500877 1.156478984 0.990867211 0.986714057 0.993268243 1.023815768 1.044362807 1.005726881 0.990475006 0.99405392 1.002513569 214037081 tktA marine gamma proteobacterium HTCC2148 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.942640047 0.892621772 0.855891285 0.907558045 0.924120879 0.925528474 0.838149861 0.851203829 0.932985753 0.955991617 0.951651409 0.883941317 0.946111745 0.91465117 0.897610342 0.860767214 0.864183432 107029134 tfda Burkholderia cenocepacia AU 1054 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 1.00604345 0.999246512 0.968283373 1.028158919 0.961951494 0.999864925 0.989219508 0.990060212 0.984118064 0.978217838 0.950089131 1.003791795 0.929770049 0.957859047 0.911110869 0.945210469 0.997857046 0.981903923 354960072 poba Bradyrhizobium japonicum USDA 6 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.774914918 0.86268715 0.826673534 0.835703849 0.878711315 0.865585283 0.791459795 0.892498342 0.890085375 0.846737405 0.869911696 0.918203102 0.83922996 0.801871627 0.871985751 326199167 arsc Gordonia neofelifaecis NRRL B-59395 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 1.058179925 1.089713481 1.044781912 1.102470942 1.062866942 1.081289662 1.009439795 1.040222371 1.060197511 1.050022657 1.005597655 1.059057127 1.027664714 1.031579349 0.977949626 1.020598317 1.109907111 1.112759091 383826075 merb Mycobacterium xenopi RIVM700367 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 1.080679741 1.10523127 1.120154674 1.065735472 1.10207362 1.130738691 1.102628703 1.072557423 1.045175662 1.111603675 1.110147961 1.079551516 1.042116628 1.076985418 1.023754593 1.070992234 1.137894128 1.137133743 192282915 ben_bcla Rhodopseudomonas palustris TIE-1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.047477128 1.082250302 1.01331789 1.066368745 1.019291999 1.087989982 1.014432893 1.036665476 1.095155829 1.02602063 1.017048072 1.034728409 1.009716568 1.030047244 0.987412882 1.019048099 1.070541611 1.064392372 117619150 amyA Aeromonas hydrophila subsp. hydrophila ATCC 7966 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 1.088817434 1.091362324 1.08910435 1.077440704 1.069355307 1.102042734 1.059106507 1.043660807 1.057654325 1.044384203 1.039384935 1.053901807 1.045181148 1.029758374 1.020816083 1.041090949 1.0935047 1.073668426 159477197 nitrate_reductase Chlamydomonas reinhardtii Nitrogen N Assimilation NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 0.787011299 0.850953604 0.870511649 0.893334432 0.825260589 0.801065361 0.794624267 0.865117515 0.83847022 0.866220297 0.813885258 0.822615505 0.804361583 206576010 mhpb Klebsiella pneumoniae 342 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 1.220417313 1.211656402 1.198982455 1.227024473 1.187048523 1.17372539 1.176221889 1.157345581 1.218349174 1.195663556 1.191583943 1.179280565 1.1607585 1.112092583 1.142405276 1.170927738 1.231175566 1.212768744 316997264 amyA Kocuria varians Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria; 1.069188852 1.048293088 1.066160321 1.098606748 1.030853045 1.099167236 1.031045611 1.090463069 1.066255325 1.053722414 1.049690908 1.025959278 1.075831997 0.987486005 0.975493449 1.029328012 1.106740371 1.068570781 60476012 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.847858269 0.869038846 0.869407091 0.891439095 0.854957704 0.868383422 0.88066195 0.904680085 0.975712962 0.886005566 0.87010853 0.840717436 0.816984583 0.82443603 0.80735706 0.797774209 0.886633347 0.87585623 241113659 TIM Rhizobium leguminosarum bv. trifolii WSM1325 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.160444346 1.138783347 1.098871327 1.155791107 1.078877226 1.131421368 1.068530189 1.083843589 1.107098258 1.105134598 1.101434795 1.10839008 1.077055064 1.087730608 1.080409241 1.121005086 1.154050989 1.107079826 225683239 nirk Paracoccidioides brasiliensis Pb03 Nitrogen Denitrification NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 1.493985011 1.43365376 1.415268587 1.446157277 1.463148483 1.45232591 1.438831502 1.450907483 1.438781827 1.397693949 1.425876236 1.449471337 1.454275464 1.368341682 1.428133585 1.413621587 1.442454934 1.405236756 346644299 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.9024137 0.877274459 0.846858862 0.883662235 0.826543148 0.875697558 0.885474243 0.856744868 0.822820293 0.87391453 0.84323664 0.844324277 0.836650034 0.900244167 0.851568108 74038398 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.87274427 0.915569634 0.84709397 0.866985986 0.820135953 0.86246066 0.816537638 0.854485242 0.821912128 0.875046105 0.830302966 0.852710205 0.844978039 0.842150435 0.844437222 0.821703375 0.926635669 257797802 arsc Desulfohalobium retbaense DSM 5692 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 1.001266995 1.07308702 0.965660929 1.010560865 1.000360662 1.073758819 0.975300607 1.00258251 0.993534652 1.075757932 1.034902955 1.035181179 1.021479835 1.029617588 0.936375035 1.005001526 1.014778002 1.06082705 407803058 alkb Alcanivorax sp. W11-5 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 0.989504755 0.989407751 1.000508491 1.051683573 1.014666451 1.050613284 0.997687719 0.976101873 0.951294941 0.943635628 0.967086927 0.934870024 0.996234103 0.978907431 0.975293748 0.980322975 1.033028608 0.999807023 262014342 protease_serine_fungi Arthrobotrys vermicola Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Arthrobotrys; 1.038925685 1.044500643 1.035049336 1.048853608 0.978562306 1.068781385 1.029509851 1.047515992 1.060338155 1.028070197 0.991275473 1.00655288 0.960940228 1.023568506 0.893654555 1.021003855 1.048166842 1.016687974 377810815 xylc Burkholderia sp. YI23 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.004879884 0.976050522 0.985575076 1.021508527 0.988987354 0.969416768 0.961577811 0.998368183 0.965730652 0.927421405 0.966694606 0.969387375 0.920227625 0.903226495 0.910203721 0.881056631 1.012263263 0.987487066 359423194 badh Gordonia amarae NBRC 15530 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.859769496 0.873218455 0.913850678 0.866950504 0.841406142 0.795603937 0.84083229 0.853456784 0.852273067 0.877118733 0.8482046 0.835779432 0.818932922 0.884973723 0.853145918 114327520 tktA Granulibacter bethesdensis CGDNIH1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 0.877216658 0.87966359 0.861679949 0.874188882 0.880856195 0.869255017 0.887073644 0.885404778 0.886937969 0.873052276 0.835890187 0.840972773 0.807832908 0.869683113 0.836799623 0.851054147 88814828 cda marine actinobacterium PHSC20C1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 0.772872958 0.840358524 392721330 tfda Novosphingobium sp. Rr 2-17 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1.021465155 0.975907726 0.99352712 0.961511351 1.006160409 0.993270779 0.999651089 0.981720809 0.962158475 0.958240503 0.955228961 1.001014548 0.91637427 0.905393507 0.915341726 0.876544193 0.947754238 1.004781097 261855030 tktA Halothiobacillus neapolitanus c2 Carbon Cycling Carbon fixation Calvin cycle 1.0397068 1.022611008 1.008697619 1.045642578 1.023108716 1.082698702 1.028591099 1.015496646 1.035736527 1.010338262 1.031696974 1.039312393 0.99997137 1.007721501 1.020113546 0.978703743 1.058338766 0.994442621 357969794 arsc Halomonas boliviensis LC1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 1.116745928 1.107650146 1.106257446 1.108740968 1.077138116 1.093155832 1.05720384 1.076984937 1.102173605 1.06990898 1.095077178 1.095798462 1.054199538 1.038076275 1.055299897 1.068546713 1.10281724 1.087005893 94471323 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.058913067 1.048325503 1.084792593 1.036909733 1.080540323 1.092937392 1.080920087 1.042067001 1.03205166 1.072863642 1.096197354 1.041549208 1.065177349 1.04732004 1.010585058 1.066212699 1.065888518 1.072204546 161897607 amyA Arthrobacter aurescens TC1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 1.391188802 1.34680147 1.343998159 1.352531811 1.345467624 1.393501147 1.355326521 1.368436618 1.35073981 1.331115289 1.333975704 1.3689239 1.356321582 1.294257023 1.346910286 1.334480042 1.364348628 1.325584637 116249170 badh Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.04363309 1.114891701 1.044404888 1.070244166 1.08013416 1.023743784 1.020301159 1.066528753 1.080110535 1.074258653 0.973145433 1.041721935 1.017963334 1.058033147 1.00762109 1.027818203 1.070012023 1.089981127 329962236 acetylglucosaminidase Bacteroides fluxus YIT 12057 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 0.812961037 0.789965851 0.81992406 0.861605724 0.846593524 0.847487752 0.812917073 0.858304723 0.820708886 0.840040085 0.842148934 0.791011419 0.921940719 0.874521025 164455332 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.88212036 0.866334197 0.877323356 0.839990005 0.792377684 0.803513875 0.864000781 0.836209973 0.825321403 0.849369059 0.860578202 162282261 tktA Hoeflea phototrophica DFL-43 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 0.916641231 0.90928076 0.894154009 0.891041882 0.910925513 0.938483553 0.891981659 0.836189162 0.886899346 0.916437219 0.827801151 0.860055947 0.870606054 0.850196696 0.847066471 0.880262216 0.946626402 0.937451827 395428584 terc Bartonella tamiae Th307 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tamiae; 1.339097349 1.29895974 1.289535648 1.356013719 1.348618435 1.301816442 1.346610995 1.367287841 1.346327293 1.312031757 1.29106251 1.332565556 1.325584388 1.250997236 1.27863973 1.306529992 1.313424832 1.277953924 357224867 nosz Marinobacter manganoxydans MnI7-9 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 1.034310958 0.971098405 0.978027909 1.046009543 0.97543249 0.997312375 1.011391677 1.029855154 1.030266031 0.98788803 0.961460881 1.012103584 0.99521443 0.975020158 0.968965407 1.008448905 1.021355125 0.959922873 257147866 amyA Lactobacillus rhamnosus GG Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 0.97221968 0.909178541 0.946973049 0.965928928 0.908295745 0.968374114 0.910571175 0.917056409 0.967191721 0.95327118 0.950904639 0.92587694 0.94169458 0.993567543 0.889524745 0.958967468 0.951087571 0.94462031 329114515 fccab Acetobacter pomorum DM001 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 1.0333658 0.927039985 0.977898054 0.992545998 0.966718383 0.959637645 1.010742351 1.008582003 0.969702612 0.943449884 0.944428358 0.9527744 0.914288658 0.912652873 0.910780025 0.852886916 0.953352337 0.974052614 310796134 phospholipase_C_fungi Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 0.986988091 1.015668804 0.964450302 0.993028789 0.995231102 1.028656541 0.967183545 0.97685223 0.984847433 0.988588453 0.987866164 0.972648174 0.979489552 0.97506049 0.970509617 0.934037197 1.024409712 1.04036949 303293115 fthfs Ahrensia sp. R2A130 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.867243559 0.833319494 0.83960432 0.863446472 0.832826368 0.840847437 0.830993369 0.796498241 0.880214744 0.86816698 0.845591426 0.861504213 0.823428974 0.773107124 0.846175312 0.85909117 94310455 tktA Cupriavidus metallidurans CH34 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.909536938 0.820486463 0.847351042 0.874614203 0.895168054 0.857544844 0.804172846 0.867092606 0.857393606 0.82446895 0.859736581 0.870348185 0.858727203 0.816342231 0.873266949 0.79643903 0.905672221 0.873861627 345298672 trze Enterobacter asburiae LF7a Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter asburiae; 0.929811761 0.928202069 0.921332745 0.981237471 0.915102797 0.971238612 0.923704414 0.912586981 0.947925361 0.911230242 0.930735983 0.933619018 0.8968243 0.942800333 0.896877408 0.910753526 0.972957421 0.947746245 261359809 Sir Verticillium albo-atrum VaMs.102 Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium albo-atrum; 1.063942926 1.044302855 0.98800051 1.043433228 1.000483123 1.027675336 1.018439436 1.01645357 1.040345461 1.063162118 0.987312302 1.010114168 0.992936565 1.017505214 0.91434258 0.998561738 1.037095856 1.066570337 253689983 xylanase Pectobacterium carotovorum subsp. carotovorum PC1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.836287061 0.837555936 0.825406483 0.865887943 0.817722929 0.846778764 0.859665237 0.840835302 0.829567432 0.834152753 0.853822867 187982733 axe Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 1.240124697 1.237883684 1.19068903 1.23008091 1.205872129 1.246503794 1.200366608 1.220360422 1.210964466 1.182105066 1.189320756 1.207301088 1.185990347 1.175742915 1.156559483 1.180650428 1.241679998 1.210970187 342316510 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.7846671 0.829769586 0.829823934 373251753 ara Nesterenkonia sp. F Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 0.910640999 0.855112205 0.799485287 0.838316489 0.864332818 0.852904367 0.823973904 0.900405645 0.861257666 56809455 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.036769039 1.051835651 1.007589406 0.9925544 1.097079997 1.046793221 1.094482909 0.98106721 1.018386122 1.046739684 1.013391877 1.031936961 1.061791264 1.081817308 0.985770398 0.985566525 1.001534206 1.056114241 255293023 bphc uncultured bacterium Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria; 1.170298388 1.172349681 1.140978076 1.173727069 1.153198288 1.178534975 1.164093595 1.168701223 1.16444413 1.151828142 1.097468476 1.120942054 1.123439495 1.127267831 1.07415773 1.123491632 1.163681627 1.165615574 300102225 rgh Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.956710664 0.91907765 0.906665786 0.934241747 0.903041999 0.935374153 0.925042519 0.915661129 0.9129797 0.921958589 0.880641542 0.901583149 0.862230774 0.883866104 0.89723168 0.858740626 0.890824942 118758093 vana Sphingomonas wittichii RW1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.274520684 1.252195841 1.260581117 1.284584526 1.250688275 1.317414024 1.229061307 1.241498219 1.259284124 1.231180311 1.21792646 1.243410164 1.236493077 1.222310762 1.241013563 1.23710356 1.303103163 1.258646972 342826822 ppx Vibrio nigripulchritudo ATCC 27043 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 1.048385026 0.933636009 0.997621125 1.022233504 0.989714532 0.989363284 0.900166911 0.95876118 1.014630269 0.994903128 0.99441261 0.990906993 0.967650746 0.95292757 0.939514869 0.944169216 1.025161233 0.945534439 110822175 urec Rhodococcus sp. RHA1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.062940266 1.076701074 1.064028946 1.053630324 1.076775135 1.08351775 1.093507179 1.050363996 1.075086698 1.097827464 1.059404539 1.08862227 1.048820813 1.063364842 1.041774806 1.049345494 1.061772927 1.087496763 337269596 ppx Mesorhizobium opportunistum WSM2075 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 1.138052412 1.086334735 1.130233478 1.141008557 1.125041799 1.138669239 1.137813747 1.136303173 1.126052821 1.095754549 1.121132064 1.127838329 1.120212096 1.074732734 1.070706712 1.095853503 1.148247099 1.094915423 17738975 ppx Agrobacterium tumefaciens str. C58 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.648050355 1.575186264 1.586242693 1.606582914 1.565011897 1.641691445 1.58330743 1.60432462 1.595216388 1.5803174 1.573714991 1.58180398 1.556754689 1.523473218 1.542471087 1.588069622 1.648318717 1.56595964 340030443 arsc Paracoccus sp. TRP Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 0.947244043 0.888999598 0.94645572 0.952266158 0.909321832 0.949607818 0.90174122 0.897799235 0.947878987 0.873315796 0.87738964 0.923865182 0.89332689 0.917084846 0.841861026 0.890379644 0.985734388 0.910744923 223983462 cellobiase Holdemania filiformis DSM 12042 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 0.873658645 0.803216598 0.922334725 0.849622642 0.797589762 0.826170759 0.842120282 0.832598702 0.839005895 388440524 SoxC Rhodanobacter thiooxydans LCS2 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter thiooxydans; 0.939276779 0.954248174 0.934358496 0.929433491 0.902553512 0.956604133 0.96576761 0.957157702 0.937068035 1.013682749 0.92386644 0.907619104 0.927320713 0.959314822 0.968662405 0.907811409 0.967377794 0.976131968 154158832 mer Xanthobacter autotrophicus Py2 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 0.912431966 0.86947307 0.847050877 0.853100032 0.868353433 0.896519791 0.829153273 0.846717857 0.848501251 0.857791792 0.829108137 0.840181772 0.881578341 0.87905393 62003515 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.169348587 1.176476313 1.164722642 1.137284977 1.127515897 1.156163452 1.112973379 1.122287883 1.147694175 1.143618174 1.127072395 1.155318706 1.104298099 1.127093809 1.087379087 1.135342138 1.156710129 1.16306292 126715555 dehh109 Roseobacter sp. CCS2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.869050555 0.838799135 0.808738179 0.863081231 0.815102078 0.852113782 0.833979407 0.816781531 322421194 mer Geobacter sp. M18 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 1.266487411 1.251114996 1.209896358 1.266795789 1.216341929 1.220577172 1.209050484 1.225728433 1.229309173 1.230325597 1.216208705 1.23805921 1.188258311 1.186533913 1.183471736 1.198064929 1.241607008 1.215969406 27529597 dehh109 uncultured bacterium Organic Remediation Chlorinated solvents NA superkingdom:Bacteria; 1.16183762 1.208912203 1.169677709 1.162300964 1.18171802 1.195607246 1.139077717 1.165422301 1.130829123 1.162321795 1.15535686 1.19509501 1.140811046 1.167707785 1.152098385 1.150575869 1.192104741 1.177731594 353190525 linb Mycobacterium rhodesiae JS60 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.808367727 0.790966613 0.778191516 0.841985488 372273135 bphF1 Marinobacterium stanieri S30 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 0.946000962 0.91107107 0.882211634 0.948433647 0.854039508 0.971770789 0.856403577 0.921298671 0.94758033 0.925424882 0.90191591 0.890504989 0.851302168 0.945966762 0.870022574 0.872763822 0.967776964 0.895038059 335433571 amyA Halorhabdus tiamatea SARL4B Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 0.990040542 0.974394573 0.983747077 0.998071734 0.893197098 0.954780614 0.923225823 0.960857653 0.981219759 0.957661689 0.92024734 0.929004635 0.888245058 0.935793265 0.892648117 0.891661153 0.992597714 0.976889128 60326776 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.859213495 0.834556407 0.836618495 0.843436247 0.896037883 0.850002648 0.819259334 0.842550655 0.819657967 0.81768832 0.822251913 0.872444198 0.855727915 0.808414462 0.831416445 0.895641503 0.86163501 164455296 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.845519882 0.837467844 0.797401617 0.827079723 0.815583115 0.819562818 0.820552543 0.857022054 0.863209174 0.804549743 0.814370423 0.828951055 0.812405159 0.861580782 240167790 cutinase Mycobacterium kansasii ATCC 12478 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 1.372089607 1.30800706 1.339748417 1.358246816 1.350212761 1.377929121 1.349366849 1.371942513 1.341485121 1.316281203 1.346605718 1.340885034 1.318183143 1.285961284 1.286527693 1.31580755 1.378442744 1.302874093 302520067 chitinase Streptomyces sp. SPB78 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.848314694 0.966450178 0.940865061 0.86048184 0.900382709 0.930732924 0.841949422 0.840545141 0.881954543 0.864723473 0.82554569 0.885873468 0.896766121 0.863252239 0.854344252 0.855986181 0.927970099 225016067 CsoS1_CcmK Clostridium methylpentosum DSM 5476 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 1.09675344 1.041590171 1.069722529 1.014387155 1.048197342 1.124086379 1.033542866 1.051440808 1.031357711 1.029612236 1.056114553 1.027897246 1.026088951 1.005044384 1.01208048 0.97477248 1.084678286 1.006655269 197707358 urec Streptomyces clavuligerus ATCC 27064 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 1.15948048 1.118012929 1.101262454 1.123201832 1.053967739 1.099172352 1.07495038 1.092559368 1.099120698 1.085724242 1.08427081 1.109701452 1.062695526 1.054750702 1.039114959 1.079115665 1.105390598 1.098156383 193085180 dsra Chlorobaculum parvum NCIB 8327 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 0.898077414 0.847663353 0.848871725 0.896712847 0.878342781 0.839066944 0.909423201 0.867837312 0.893824458 0.852778485 0.855297749 0.893349987 0.842138507 0.80488568 0.804531558 0.890284567 0.86322109 220922349 catb Methylobacterium nodulans ORS 2060 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 0.994578552 1.048525223 0.982222735 0.991887118 0.983946672 0.999787728 0.983847427 0.982584944 1.016017712 0.973452834 0.963877987 0.999645209 0.984496519 0.936219883 0.953257127 0.976545738 1.000017376 0.977970369 422314405 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.928813383 0.977025854 0.921096633 0.949610219 0.927589084 0.970521574 0.907150533 0.876238709 0.877853505 0.91015362 0.941533186 0.931015597 0.909045804 0.922396455 0.868558513 0.936882232 0.964055004 0.962616332 398066231 phn Rhizobium sp. CF080 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.08634209 1.042085703 1.069163785 1.063667918 1.042540843 1.069632749 1.058656218 1.063782907 1.047671941 1.031246566 1.054999288 1.037811007 1.010687304 0.987675614 0.971330324 1.001732054 1.068487043 1.032821618 222440607 FBPase Labrenzia alexandrii DFL-11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 0.884173501 0.85251827 0.881014356 0.993992233 0.962099437 0.893497884 0.981534418 0.967657942 1.000612287 0.904425331 0.921841314 0.913815416 0.931744185 0.845001371 0.959408151 0.943737307 0.930801417 0.945721984 333389184 narg Enterobacter hormaechei ATCC 49162 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 1.208714515 1.113492284 1.124827348 1.114518007 1.057753897 1.030249177 1.031203143 1.067798363 1.126878427 1.186779461 1.15383796 1.133767329 1.044273863 0.993223985 0.980339864 1.041803936 1.157596562 1.112576807 164455812 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.471845254 1.423558541 1.427960922 1.427620377 1.419301242 1.476358016 1.419747948 1.434338516 1.422066519 1.409282137 1.430547672 1.417171502 1.419110492 1.380205026 1.387516549 1.411700907 1.465902011 1.416013507 300586215 TIM Cupriavidus metallidurans CH34 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.344540152 1.342924162 1.290704332 1.328907339 1.304752721 1.327252439 1.269975788 1.288942787 1.326715317 1.277319556 1.288551854 1.309274183 1.267007606 1.241723324 1.267469476 1.274143506 1.33123547 1.323411506 379065456 ppx Pseudomonas stutzeri ATCC 14405 = CCUG 16156 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 1.209314518 1.200339642 1.202371122 1.195580011 1.186814526 1.21479553 1.169324757 1.206457296 1.181847742 1.183973495 1.178323857 1.201357713 1.173744723 1.179751327 1.168393643 1.19037086 1.198815412 1.208748906 237858247 GAPDH_Parabasalia Macrotrichomonas sp. GsMG9 Other Phylogenetic NA superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Macrotrichomonas; 1.085860304 1.051252904 1.063016513 1.095722076 1.078684744 1.073435248 1.076226144 1.062449622 1.037381135 1.072788005 1.088821644 1.074317017 1.01973627 0.996691639 1.009776587 1.000416076 1.051153196 1.031075532 83026028 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.469403646 1.417281214 1.409416934 1.414590205 1.380397733 1.414711627 1.38240336 1.418602824 1.422474603 1.408879284 1.395336299 1.441970419 1.367312088 1.365575161 1.3714413 1.394519321 1.43373374 1.405253516 154362248 fthfs uncultured microorganism Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway 0.883250435 0.834195628 0.905550244 0.833081482 0.830119675 0.885887814 0.843899751 0.827201819 0.803658 0.869490072 0.843819718 0.8768668 0.810033653 86357913 catechol Rhizobium etli CFN 42 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.104036158 1.109529883 1.081029903 1.098324849 1.105181044 1.091751341 1.144869533 688433 exaa(moxf) Methylomicrobium album BG8 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 1.071369335 1.065917732 1.065247509 1.072260599 1.092715209 1.088273271 1.09493625 1.059369985 1.071447462 1.065495115 1.090396829 1.083865009 1.08118717 1.039355534 1.074557369 1.098407914 1.094335167 1.051561061 164598122 exoglucanase Clitocybe nuda Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Clitocybe; 0.748803832 0.797922961 335881720 cysI Rheinheimera sp. A13L Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 0.941488635 1.00190052 0.902618565 0.928516774 0.921277737 0.855628691 0.92482703 0.861562015 0.888042885 0.838078845 0.915053996 0.812822594 0.948271578 0.880695798 0.960443282 0.84764632 111918708 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.090863033 1.027472365 1.070535759 1.073379761 1.014964017 1.039199037 1.015654596 1.077262834 1.068931316 1.04605886 1.054704458 1.071754227 1.034214989 1.02551728 1.013856544 1.028175332 1.05445224 1.021201373 299077770 cysI Ralstonia solanacearum PSI07 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 1.192884436 1.197996562 1.134930344 1.160685256 1.111046753 1.169505032 1.086910481 1.137423848 1.152081827 1.14818195 1.128045996 1.12988129 1.10774705 1.126205339 1.096760065 1.121952688 1.16814514 1.163298251 254271693 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 1.086240236 1.094109091 1.074665533 1.115665894 1.091848312 1.111284346 1.057555429 1.097808674 1.08809703 1.063870334 1.061272956 1.069858939 1.021374786 1.033563217 1.031471209 1.024649741 1.086320319 1.094232089 93356203 SoxA Cupriavidus metallidurans CH34 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.964811544 0.940810611 0.970033247 0.984104935 0.991331204 0.98403538 0.994117597 0.969671001 0.971281745 0.935911508 0.993435881 0.961707073 0.958639545 0.912580279 0.932233045 0.916448682 0.972623961 0.95307702 256392950 amyA Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.245386725 1.229976409 1.20631917 1.191259097 1.209911141 1.263281023 1.183487504 1.196093008 1.189099683 1.227748845 1.198996383 1.215591033 1.191600682 1.213635962 1.192371054 1.193803875 1.218084722 1.245217535 86606272 CsoS1_CcmK Synechococcus sp. JA-3-3Ab Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.84295072 0.878260045 0.803784173 0.822264514 0.868647054 0.854230569 0.852369843 0.810597883 0.838763926 0.796615164 0.802221707 0.813908269 0.839421288 0.847282006 14571783 trzn Streptomyces coelicolor A3(2) Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.842337462 0.808671083 0.802674801 0.834717402 0.794382224 0.831836046 0.849643191 334732479 terc Ramlibacter tataouinensis TTB310 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 1.001116609 0.993244113 0.961395692 0.975773625 1.010912763 1.008719926 0.973449705 0.979461024 0.993511305 0.965242836 0.954331986 0.987428774 0.978692987 0.958659968 0.951699491 0.976447117 0.97754275 1.029096947 116200458 axe Chaetomium globosum CBS 148.51 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 1.032254542 0.98023622 0.97354469 0.988732661 1.035435969 1.015887382 1.004095295 0.94128136 0.987762468 1.013700387 1.029333893 0.973111953 0.967684082 1.012891213 0.949867367 0.978736854 1.019025781 1.037717782 373103564 bphd Cupriavidus basilensis OR16 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.909796376 0.964404276 0.893486646 0.898177928 0.88350646 0.953899515 0.886052467 0.89483191 0.935924882 0.921014438 0.908658808 0.903793988 0.873875899 0.888151667 0.809137116 0.862700893 0.915525395 0.954408076 374847618 ppk Nocardia cyriacigeorgica GUH-2 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 1.053504156 1.200524859 1.056659236 0.969283553 1.079678153 1.074906799 1.010109522 0.970996046 0.990489798 0.961983239 0.976588278 0.996805336 0.967227871 0.957540906 0.958691807 1.002676147 1.024202538 0.990608231 390569945 bphF1 Burkholderia terrae BS001 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.780213768 0.844793836 111021480 atzb Rhodococcus sp. RHA1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.892026122 0.985168505 0.867752203 0.858025156 0.896385028 0.874977895 0.873643402 0.829777295 0.878702468 0.912549371 0.83776252 0.879673127 0.805798364 0.849422781 0.772239646 0.817076578 0.865508619 0.883499206 359734160 limeh Rhodococcus pyridinivorans AK37 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 1.07894199 1.002206929 1.021578785 1.077739505 0.926729853 1.021912186 0.961075949 0.992733062 1.074470612 1.018325005 1.002382429 1.022914009 1.002685545 0.997402211 0.953854408 1.003323738 1.070285745 0.997951 14026766 pcag Mesorhizobium loti MAFF303099 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.998303409 1.033006453 0.935054931 1.001348364 0.987640616 0.977897006 0.962231075 0.935405851 0.964045733 0.978316366 0.978771236 0.979124116 0.929664121 0.925447742 0.908368213 0.914728597 0.966356711 0.988993262 94471207 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.165973985 1.118684763 1.137186526 1.140911593 1.125503999 1.156643192 1.079670134 1.121641033 1.120369962 1.093974136 1.127061297 1.157451199 1.097659197 1.071170996 1.089659008 1.09839637 1.139630508 1.117174205 337746268 rgl Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.834771996 0.809100879 0.784247413 0.815089544 0.802669275 0.855964326 0.852185107 0.8726319 0.832523712 0.804534095 0.883714719 0.848094602 290961026 amyA Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.911534896 0.939283364 0.918803977 0.907011975 0.91074548 0.923763062 0.889775992 0.875167173 0.911125495 0.863706992 0.873980684 0.854410554 0.884843839 0.89874837 0.819878978 0.831165106 0.944983228 0.931280305 197723050 rgl Streptomyces pristinaespiralis ATCC 25486 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 1.149349634 1.065415398 1.076088745 1.07050418 1.145805651 1.200238003 1.083048332 1.067295669 1.038870163 1.066330656 1.061671497 1.067088553 1.070784915 1.063507456 1.23679525 1.106294336 1.154905625 1.226005663 284158780 mannanase uncultured microorganism Carbon Cycling Carbon degradation Hemicellulose 0.91393599 0.874074959 0.903441951 0.91594275 0.963028433 0.916405423 0.899296575 0.936231935 0.90876523 0.858783409 0.907754495 0.950891564 0.853685548 0.843079698 0.886434448 0.992216789 0.883840831 0.896077188 160917583 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.949091799 0.86225513 0.88550631 0.960223637 0.905233704 0.843572514 0.906681276 0.951457687 0.939432552 0.904940586 0.952604668 0.943764335 0.891165016 0.937274581 0.86833001 0.840235662 0.885851028 0.903279969 116270553 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.773788008 0.836929043 0.808420588 0.825383605 0.853637074 0.879719003 0.823010574 220696777 cutinase Aspergillus flavus NRRL3357 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 0.815513254 0.844527352 0.806554467 358754255 amyA Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 1.284513933 1.288679142 1.257597494 1.261964709 1.262329375 1.271261456 1.223208673 1.240659983 1.25817895 1.275944107 1.271352967 1.283914882 1.235367381 1.197255187 1.208772955 1.200903474 1.27492347 1.22564271 146339296 tfth Bradyrhizobium sp. ORS278 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.147882518 1.111450905 1.104829385 1.117935712 1.122552829 1.123061 1.096497688 1.10139069 1.117749402 1.07419325 1.088771409 1.102152754 1.096296642 1.082132684 1.061700375 1.076043735 1.125732424 1.114673095 320096104 amyA Actinomyces sp. oral taxon 178 str. F0338 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 1.12934893 1.118001592 1.12009322 1.104909515 1.101343983 1.120703156 1.098789954 1.098452035 1.114090198 1.099031313 1.061728777 1.085356606 1.079942256 1.065277155 1.02925275 1.04193112 1.130287795 1.111766037 319798033 mer mine drainage metagenome Metal Homeostasis Mercury Detoxification 1.082001213 1.072044756 1.077725716 1.075960341 1.073409944 1.103745041 1.045248209 1.00807127 1.123713163 1.026540031 1.029437232 1.04426612 1.004170105 1.021364435 1.019669135 1.033183091 1.08875927 1.088102372 88702562 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.77311113 0.810632392 0.856917296 0.827748622 0.810302715 0.809874795 0.791883227 0.802559964 329575915 ara Paraprevotella xylaniphila YIT 11841 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 0.871191221 0.846024614 0.817965896 0.883581077 0.833927556 0.85833393 0.858394823 0.874623183 0.883644161 0.914896098 0.829413311 0.819338006 0.841308152 167563648 pcpb Burkholderia oklahomensis EO147 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 1.118594448 1.134285213 1.110836679 1.128074063 1.122226434 1.133532731 1.146454781 1.118547313 1.091100218 1.105860399 1.096618452 1.120041962 1.108899249 1.104187439 1.106705164 1.146799223 1.115834745 1.10442685 392331123 amyA Streptococcus canis FSL Z3-227 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus canis; 1.186803487 1.176528417 1.190647994 1.222593685 1.195909531 1.199051451 1.199334259 1.225582478 1.203628559 1.163155142 1.150628351 1.192220029 1.175737678 1.12675376 1.148684608 1.150805115 1.174620082 1.149862435 332372360 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.771346264 0.784321038 409358983 alkk Dietzia alimentaria 72 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia alimentaria; 0.787278684 0.815144738 0.818873442 0.820095232 0.798815198 0.800015353 0.812529042 0.801598117 182411857 mannanase Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1.692163202 1.668892733 1.6560953 1.642927788 1.66316639 1.672004552 1.638986102 1.64368808 1.642762369 1.628638437 1.652653665 1.680572054 1.61971254 1.60429981 1.640063321 1.640846561 1.666539172 1.606996894 44916507 endopolygalacturonase_fungi Diaporthe helianthi Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Diaporthales;family:Diaporthaceae;genus:Diaporthe; 1.020325891 1.022337922 0.962700731 1.025680147 0.995802138 1.038182395 0.976515878 1.001762065 0.974054335 1.025370702 1.009958615 0.994916165 0.9719201 0.978688921 0.911149104 0.974916523 1.017251561 1.013560757 298537452 amyA Moorella thermoacetica ATCC 39073 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 0.881499971 0.930264755 0.907895161 0.918926556 0.883013016 0.910258877 0.873790366 0.877435768 0.889189018 0.897614679 0.88319216 0.854890634 0.82257713 0.889835252 0.926679864 71849040 bphF1 Dechloromonas aromatica RCB Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 1.189491538 1.197359109 1.259315715 1.186041471 1.182896999 1.155195799 1.15219717 1.175526483 1.230856922 1.1751062 1.152576144 1.212493608 1.104538006 1.159358853 1.107102984 1.155468097 1.155636365 1.140537948 307218301 amyA Halomonas elongata DSM 2581 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 1.087230796 1.095914047 1.082067566 1.070590252 1.101332615 1.094558848 1.044343159 1.093968011 1.05853667 1.098561623 1.082696972 1.047034855 1.023770774 1.047188998 1.005037108 1.024305081 1.048435369 1.074529471 163794918 hbh alpha proteobacterium BAL199 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.047619356 1.032388326 1.061338424 1.010252944 0.996137233 1.024409493 0.997469986 1.002330849 1.028492534 1.034472471 1.010685703 0.975196052 0.965096375 0.977546649 0.929935747 0.981567535 1.024418825 1.060829153 156191723 urec Methylobacterium chloromethanicum CM4 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 1.234206315 1.230372102 1.201173911 1.213916075 1.200214444 1.252805305 1.170054039 1.194024217 1.194834453 1.205036961 1.201195481 1.18702942 1.195794822 1.202569301 1.13007888 1.196673268 1.220276145 1.235014034 329850182 xylanase Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 1.13265204 1.060275797 1.110601854 1.117951609 1.061144826 1.035623864 0.995026077 1.032209821 1.118344714 1.049493786 1.082483714 1.052174794 1.079088455 1.056224781 0.999854041 1.036903449 1.138318139 1.056335463 88062433 dsrB uncultured Desulfohalobiaceae bacterium Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae; 1.280149473 1.213150579 1.177133897 1.214859409 1.203517423 1.233025288 1.197847807 1.200941059 1.216628036 1.176670278 1.243166789 1.200221238 1.221098698 1.19003552 1.198782143 1.156853696 1.226192407 1.158931701 151302120 aps_apra Thermodesulfobacterium commune Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfobacterium;species:Thermodesulfobacterium commune; 0.923723986 0.935910118 0.87026844 0.924713431 0.883799899 0.961095495 0.86362314 0.870980149 0.932693304 0.912360568 0.876293228 0.917818023 0.858535905 0.879555118 0.836871733 0.842011439 0.942056808 0.932226743 283784527 pme Citrobacter rodentium ICC168 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 1.028865896 1.087726583 1.053899095 1.020172196 1.034387114 1.063527472 0.995338035 1.007932827 1.0099816 0.981029092 0.981096977 1.022510055 0.988543636 0.989885609 0.986145024 1.023580115 1.122731985 1.002933174 359731526 merb Rhodococcus pyridinivorans AK37 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.964819177 0.998302803 0.896784204 0.983515174 0.999687207 0.969046776 1.008978826 0.946856418 0.966311914 0.970632768 1.003960063 0.989030382 0.928901362 0.875564636 0.856818631 0.837762734 0.902370564 83840580 soxY Sulfitobacter sp. NAS-14.1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.854397184 0.820681163 0.868224453 0.911328026 0.807173082 0.849595422 0.831449599 0.877263826 0.869472823 0.862075196 0.817141801 0.886273619 0.805321767 0.840797744 0.84263275 0.875533178 0.860634559 302405513 pel_Cdeg Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.978035487 0.939466785 0.958967803 0.956138652 0.903357718 0.844449897 0.85939514 0.9505304 0.96629576 0.88799606 0.944509862 0.926025569 0.847211411 0.869646011 0.910924643 0.864174403 0.943298862 0.937754735 73534169 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.069036429 1.074452838 1.042188473 1.096101864 1.054585154 1.082164331 1.024861748 1.057659813 1.046649743 1.087755784 1.045612623 1.100889571 1.041721177 1.036481298 1.020858232 1.081896093 1.06330266 1.087754411 377570755 cdh Gordonia terrae NBRC 100016 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 0.955656659 1.006951404 0.960492637 0.971171284 0.9436935 0.980560433 0.90506751 0.937085359 0.863314356 0.937676303 0.868545358 0.934833424 0.906083417 0.912832767 0.891155521 0.906343304 0.954837033 1.018792894 388551611 alkj Pseudomonas chlororaphis O6 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 0.853044693 0.859129895 0.864672576 0.903613528 0.90449329 0.822441801 0.883280007 0.863552258 1.108783852 0.861927664 0.86085434 0.8892142 0.874002453 0.81552514 0.808476609 0.840022044 0.883643477 0.889910855 398957292 poba Pseudomonas sp. GM33 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.799745133 0.824563928 0.790134992 0.812178246 45386169 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.046765837 1.075129036 1.030066569 1.022350372 1.018699208 1.069874343 1.023604609 1.070178377 1.016075734 1.061159962 1.005664378 1.025318606 1.047505407 1.06437684 0.987243378 1.028393306 1.073236016 1.07660993 353194941 arsc Halobacterium sp. DL1 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium; 1.26959612 1.24004827 1.248322525 1.23545953 1.245558802 1.272818495 1.241337112 1.22944348 1.263835152 1.236475574 1.252858505 1.239020638 1.221003117 1.191939494 1.225812214 1.232880659 1.248130849 1.241499563 115372537 linc Stigmatella aurantiaca DW4/3-1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 0.886059046 0.863319384 0.91827488 0.888806223 0.908172827 0.853405302 0.899294967 0.914194367 0.864901849 0.870686494 0.902928834 0.885594893 0.804409511 0.799344587 0.827021336 0.835010623 0.889186222 0.885984316 261857093 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.897012636 0.871741547 0.882488285 0.830996114 0.883767156 0.849859567 0.872062861 0.885164164 0.889306846 0.865048317 0.816614112 0.837635607 0.830076807 0.83337261 0.898088839 0.933190922 319805038 TIM Sutterella wadsworthensis 3_1_45B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella wadsworthensis; 1.306380072 1.27377781 1.268864261 1.311954053 1.257659473 1.326145403 1.276944425 1.287119679 1.28454239 1.275521996 1.296337324 1.285134062 1.230479975 1.249050048 1.245262156 1.249627412 1.30801888 1.27274755 271964814 amyA Streptosporangium roseum DSM 43021 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 0.982044062 0.932284726 0.886344048 0.908653149 0.889621852 0.923093323 0.91587772 0.9047009 0.930233275 0.916385126 0.891397843 0.900489203 0.881727939 0.928257494 0.83735118 18312596 AACT_DiC4HB Pyrobaculum aerophilum str. IM2 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 1.05091551 0.991189194 0.997379019 1.04514745 1.030521302 0.983729179 0.95889569 1.000531346 1.000359661 1.013591802 1.006313072 1.060512392 0.989998529 1.023427832 0.926189155 0.983958936 1.034740527 1.002564484 115359960 tfth Burkholderia cepacia AMMD Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 1.106818494 1.101494448 1.101314043 1.130138147 1.115243482 1.107940499 1.09410579 1.127243377 1.129105394 1.098316771 1.094240421 1.110269462 1.066592123 1.058145252 1.070654999 1.071706371 1.129359665 1.118182942 78494567 rubisco Rhodopseudomonas palustris BisB18 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.011057349 0.983270965 0.997625014 1.010273217 0.964339431 0.979811464 0.937832234 0.971416355 0.978081554 0.961956658 0.973648803 0.986808333 0.942207878 0.966482058 0.963049863 0.992284906 1.033256081 0.993781498 326949820 cueo Pseudonocardia dioxanivorans CB1190 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.965582942 0.961281472 0.980784848 0.984284205 0.996639191 0.978687444 1.003550387 0.99606651 0.976772644 0.921553252 0.955331618 0.95827897 0.921321535 0.8977042 0.908533989 0.910315032 0.986348095 1.003631662 357939092 pcpe Burkholderia sp. YI23 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.763562292 0.794283201 0.83957148 0.788800305 0.808044948 0.769149081 0.82836413 0.829308628 237746764 TIM Oxalobacter formigenes HOxBLS Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 1.14804021 1.11599865 1.096479094 1.122650493 1.091176595 1.092635148 1.060941814 1.096250576 1.116803345 1.10090712 1.115879908 1.143109601 1.068537715 1.062991096 1.066965526 1.075818984 1.10997923 1.109045519 116688011 mcra Methanosarcinaceae archaeon ZC-1 Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methermicoccaceae;genus:Methermicoccus; 0.889234893 0.803633296 0.76288893 0.873895853 296130017 amyA Cellulomonas flavigena DSM 20109 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 1.40608519 1.39413887 1.341874423 1.347694653 1.329835746 1.419236749 1.32671918 1.334533456 1.327786146 1.34560765 1.336054629 1.323867961 1.31449642 1.35247866 1.310646337 1.341225594 1.370621699 1.358939236 21227351 rubisco Methanosarcina mazei Go1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 0.807569532 0.903696146 0.824803403 0.811473903 0.835500762 0.829718799 0.796368063 0.825080716 0.88400169 109632429 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.928447756 0.875034835 0.976350449 0.9811765 0.902356452 1.000298844 0.941638024 0.985663669 0.96207673 0.905021589 0.955554315 0.955317088 0.876184182 0.885363993 0.903952349 0.874688474 0.911098535 0.885449821 78516810 urec Bradyrhizobium sp. BTAi1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.90977231 0.884225692 0.845425782 0.963897068 0.881483762 0.852996259 0.851110348 0.915171232 0.877260549 0.836175051 0.887946808 0.900684368 0.848795296 374922697 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.81250518 0.837120389 0.858060173 0.798420981 0.829323046 0.854188751 0.859030912 0.827156007 0.832546586 0.882403099 0.795882342 0.778090384 0.821906231 237811237 pcpe Burkholderia pseudomallei MSHR346 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 0.921354687 0.907872108 0.949036014 0.928066288 0.936453723 0.919871162 0.905883313 0.934176734 0.898866707 0.891498107 0.879895946 0.899899033 0.90076001 0.853127368 0.888919922 0.883478631 0.927134952 0.91572003 386775366 amyA Brachybacterium paraconglomeratum LC44 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium paraconglomeratum; 1.028747274 1.018069752 0.999602849 1.046870907 0.967841989 1.011681438 0.9824601 1.027459687 1.026300994 1.021174054 1.021530475 1.01834024 0.960253187 1.014955397 0.971690965 0.985612894 1.034967463 1.008569904 262100182 pectin_lyase_Oomycetes Phytophthora infestans T30-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 1.273491524 1.236103577 1.203926765 1.21289652 1.19660047 1.234293836 1.191442429 1.23396746 1.215596166 1.205353998 1.188939725 1.217542014 1.199020358 1.196772997 1.150532744 1.213992282 1.250263632 1.224499726 84495000 ppx Janibacter sp. HTCC2649 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 1.088830465 1.077527075 1.066103741 1.085818409 1.03159438 1.057081143 1.015404614 1.04363189 1.077539366 1.05704122 1.03078161 1.049937512 1.022493356 1.025452235 1.014065392 1.041722954 1.112682867 1.04429215 2385380 sqr Rhodobacter capsulatus Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 0.856823128 0.866656905 0.844355543 0.861506594 0.87021797 0.891696656 0.8547512 0.795571565 0.853410252 0.867343873 0.878826882 0.84255813 312199439 xylanase Frankia sp. EuI1c Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.207862098 1.091891157 1.10107744 1.128637376 1.129138635 1.144119897 1.132168598 1.157659087 1.131465616 1.10473446 1.12444915 1.147362282 1.128993048 1.072048018 1.062557656 1.104029753 1.156327158 1.127213966 222440772 nhh Labrenzia alexandrii DFL-11 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 1.214837643 1.189684982 1.197482302 1.239514918 1.208710335 1.189545322 1.201806929 1.222436111 1.203084407 1.1826862 1.227927721 1.254271259 1.189943163 1.14143206 1.176255907 1.206611684 1.207964226 1.163050552 324999966 limeh Pseudonocardia sp. P1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 0.819404157 0.900130991 0.88426468 0.861529545 0.890133138 0.903163128 0.869613143 0.857971865 0.881551647 0.897387275 0.863619881 0.817916909 0.796696474 0.918317643 0.875005968 295106626 dsra Gordonibacter pamelaeae 7-10-1-b Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Gordonibacter;species:Gordonibacter pamelaeae; 0.883830899 0.916940095 0.91381134 0.90398417 0.881574149 0.939739564 0.919303817 0.95433563 0.860847113 0.938732534 0.857605644 0.875950663 0.851768591 0.867165227 0.793475191 0.885928251 0.908476671 284041906 one_ring_23diox Conexibacter woesei DSM 14684 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 1.184928841 1.206192071 1.184153183 1.16210165 1.141639161 1.177107152 1.150834104 1.159757419 1.137042566 1.137138731 1.147205518 1.148979016 1.133936574 1.155046844 1.110528657 1.146528311 1.173013229 1.178821079 310795264 rgl Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum;species:Colletotrichum graminicola; 0.858305314 0.795686328 221723349 cysI Agrobacterium radiobacter K84 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.917821901 0.873758791 0.91292446 0.942890093 0.942003033 0.939277648 0.931299473 0.932405249 0.916518501 0.908678974 0.913073747 0.93309114 0.94346084 0.87264027 0.839858578 0.851530582 0.97275493 0.883723195 381375631 chitinase Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 0.82583821 0.790494236 1.025544374 0.86538836 0.894442594 0.843278621 0.884189919 0.849454306 0.849655327 1.016356268 0.813922825 0.802242096 0.820304371 0.824872744 0.84484582 126708314 phn Sagittula stellata E-37 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 0.82735418 0.871207415 0.823734129 0.816425544 0.817452854 0.850362149 0.81479336 0.845215733 0.859273521 0.796764103 0.822702146 0.812216698 0.82224271 0.867642989 46139257 rgl Gibberella zeae PH-1 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Fusarium graminearum; 1.104079985 1.096821785 1.144540623 1.180108202 1.140388059 1.132589627 1.15376025 1.147984106 1.192078381 1.140280433 1.097397615 1.145974987 1.135177475 1.118297556 1.146436834 1.123067056 1.163429648 1.122159846 226308285 urec Rhodococcus erythropolis PR4 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 1.030177101 1.052972027 1.051458014 1.040268894 1.03539266 1.069191337 1.021583282 1.048451722 1.018045548 1.007999269 1.073703099 1.039380375 0.997331023 0.999668462 1.030855642 1.03903184 1.051194594 1.038902483 361060462 amyA Niastella koreensis GR20-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 1.151823831 1.098121641 1.112121195 1.267719192 1.044408989 1.064987384 1.015632854 1.069882599 1.111342618 1.078414132 1.056223184 1.096281376 1.04327039 1.047704999 0.98235741 1.02599813 1.089877959 1.076944098 223886507 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.798715912 0.839120466 0.840975717 0.835974036 0.884048747 0.841115955 0.876341543 0.839738659 0.782412585 0.771743016 0.847347092 0.838630206 241320734 cysJ Neisseria flavescens SK114 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 1.539177054 1.470633056 1.467406709 1.515175125 1.424902603 1.501164123 1.420032729 1.463581381 1.472917981 1.44274976 1.446451845 1.444540381 1.412481236 1.41160753 1.418127535 1.462183709 1.533772989 1.456453356 254464129 SoxC Rhodobacterales bacterium Y4I Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 1.109874527 1.083038386 1.090301237 1.105488282 1.08455603 1.107428023 1.069793002 1.113744683 1.082097518 1.043269025 1.097258929 1.091159074 1.058700937 1.029525243 0.976195982 1.077025104 1.12345754 1.080304722 219864111 CsoS1_CcmK Cyanothece sp. PCC 7425 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.840927739 0.801561973 0.833348603 0.849201365 0.847259169 0.828336885 0.818872814 0.861816153 0.856521434 332662245 amyA Haliscomenobacter hydrossis DSM 1100 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 1.014948898 1.016260702 1.019765166 1.010090786 0.935741357 1.024492492 0.944424684 1.015756737 1.02601127 0.969872786 0.952684185 0.972585574 0.939210221 0.920034698 0.863282678 0.952996628 0.99461185 1.068903135 403512052 dehh Nocardiopsis alba ATCC BAA-2165 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis alba; 0.970389468 0.95776139 0.984842906 0.920124508 0.945675937 0.96112398 0.912565431 0.89007825 0.916540179 0.975459838 0.931848681 1.00611035 0.907218794 0.906009747 0.903697699 0.925976195 0.971245689 0.942945025 118744903 nifh Geobacter lovleyi SZ Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 1.128663944 1.19575624 1.077154962 1.143061582 1.077294188 1.136593836 1.084537409 1.155138963 1.095729511 1.05582792 1.064315907 1.093949859 1.069356764 1.092361084 1.093408103 1.077882961 1.103280979 1.083521483 350561731 arylest Thioalkalivibrio thiocyanoxidans ARh 4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 1.122067812 1.11718846 1.056587796 1.150193513 1.091300563 1.113309682 1.057868776 1.114485852 1.125128244 1.049841261 1.094810655 1.10091618 1.07988462 1.080490539 1.046472474 1.050095167 1.121391154 1.086551119 363416112 ben_bcla Acidovorax sp. NO-1 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.901985822 0.867289527 0.8804707 0.86859119 0.8890062 0.858683856 0.889279617 0.880437189 0.880852105 0.880551872 0.848440948 0.840121334 0.81704943 0.809632554 0.814150852 0.814217512 33391483 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.963854472 0.96337794 1.086477889 1.001053682 0.993056443 1.039708536 0.958170852 0.963621922 1.014870674 1.017285426 0.990772748 0.954033329 0.977868568 0.978057219 1.011460019 0.946214614 1.005472021 1.010385163 373853657 ara Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 0.951112576 0.90637717 0.962420346 0.957341611 0.909046785 0.927432383 0.920941506 0.9663909 0.965513569 0.910088555 0.925961962 0.91681239 0.919060678 0.971527011 0.902579501 0.913609571 0.957889862 0.94731863 389847255 glucoamylase Haloferax mediterranei ATCC 33500 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 0.841567722 0.82077192 0.906183637 0.80343882 0.829451634 1.149972534 0.837320082 325545828 xyla Xanthomonas gardneri ATCC 19865 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 0.824729821 0.812568723 0.804740225 0.786382709 0.809229047 0.829694183 0.807879137 0.806224791 0.858448315 78060255 chnb Burkholderia sp. 383 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.243534477 1.235906248 1.232007303 1.253976841 1.207831121 1.23928592 1.201982244 1.216050994 1.216285487 1.232204336 1.240195846 1.23727586 1.210881235 1.21414608 1.199659197 1.213931118 1.233306822 1.206767045 381151185 cysJ Methylomicrobium album BG8 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 0.813146487 0.833041803 0.826406309 0.835897094 0.864536785 0.820011002 0.873638669 0.835347797 0.873131948 251843343 arsc Paenibacillus sp. oral taxon 786 str. D14 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 0.901986798 0.958081184 0.917104114 0.960217611 0.936776053 0.926887308 0.887513374 0.925382743 0.870185545 0.931502905 0.852437456 0.931429502 0.904323798 0.905816964 0.849433693 0.893494434 0.910715107 0.953401852 60476352 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.212379998 1.201147817 1.180076458 1.242508254 1.197480149 1.221772252 1.177645163 1.190688971 1.181330457 1.139509148 1.148847094 1.19117485 1.16123627 1.134614482 1.159143136 1.165619598 1.225093608 1.170662662 220925115 amyA Methylobacterium nodulans ORS 2060 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 1.211732907 1.220590189 1.214900986 1.20502875 1.192082676 1.232207648 1.205201421 1.203142174 1.194989134 1.200729561 1.180259487 1.200945673 1.182920626 1.144010656 1.209600184 1.141804507 1.221910987 1.463525715 195975313 cellobiase Streptococcus equi subsp. zooepidemicus MGCS10565 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 1.047226548 0.935943027 0.881525565 0.85035786 1.001293372 1.123778848 0.989328838 0.859312574 0.916439038 1.053931369 1.013623254 0.929098458 1.010264507 1.088040998 0.912386586 0.953048027 1.112215869 1.026812662 238015689 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.834198593 0.826524599 0.804805671 0.858731591 0.841584828 0.807898004 0.84013581 0.817861179 0.803127379 0.783928355 0.840976556 0.8107521 222106170 vdh Agrobacterium vitis S4 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 1.082746263 1.004791837 0.940869881 0.972434467 0.9475522 0.856977237 0.948544418 1.062397662 1.008437678 0.83861191 0.953761329 0.986984974 0.866038461 0.854186177 0.842627435 0.869061236 0.938575492 0.957912484 169627729 bphF1 Mycobacterium abscessus Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.140442117 1.112812293 1.089402844 1.07249372 1.061080752 1.099818364 1.118727876 1.212726374 1.193559266 1.102007733 1.091632749 1.079094368 1.083484355 1.081536976 1.25287305 1.204036107 1.155870411 1.205171834 226363706 pcpe Rhodococcus opacus B4 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.976340139 0.90202722 0.979871474 0.983865496 0.848599693 0.927866473 0.872680741 0.957221789 1.009952457 0.914555118 0.88627568 0.941221456 0.911158974 0.867451077 0.87480015 0.885534546 1.031192525 0.934706681 358752123 amyA Granulicella mallensis MP5ACTX8 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 0.914986953 0.964586092 1.168818713 0.946420853 0.91871439 0.971258093 0.907550678 0.872523641 0.940959137 0.989153362 0.911849419 0.92265645 0.906846767 0.951099007 1.012304564 0.937374341 0.966414119 1.007052271 167360769 pcpe Rhizobium leguminosarum bv. trifolii WSM1325 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.106751586 1.129078831 1.138071888 1.109077835 1.107114315 1.145634003 1.093287162 1.089111987 1.11358958 1.13042674 1.130542623 1.103238903 1.09613091 1.082997317 1.057380626 1.07778394 1.147257801 1.13559585 220909871 tktA Cyanothece sp. PCC 7425 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 0.948395484 0.937000457 0.951887521 0.949075442 0.996226227 0.931882754 1.0042947 0.979748048 0.910751101 0.973405333 0.972519048 0.979825336 0.979581588 0.917310648 0.873014638 0.916821899 1.007020609 0.969396633 340793642 amyA Corynebacterium variabile DSM 44702 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 1.27638071 1.285354757 1.261996539 1.253160639 1.237430349 1.293981535 1.222446697 1.25655819 1.262654724 1.280199095 1.223409662 1.243320985 1.241020469 1.250684607 1.240083219 1.232614593 1.252044522 1.279094067 357408084 vgb Streptomyces cattleya NRRL 8057 = DSM 46488 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1.011532971 0.957784198 1.006426718 0.980024648 0.926177019 0.920345755 0.863747163 0.931403602 0.993292326 0.935870056 0.954096771 0.921633497 0.971447611 0.872651972 0.872285241 0.906208696 0.995995681 0.910659165 315120559 terc Parascardovia denticolens DSM 10105 = JCM 12538 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 1.415710737 1.361989419 1.389875334 1.386051052 1.354916044 1.389935787 1.352490243 1.381027412 1.388300447 1.376517247 1.378596872 1.379445627 1.339544762 1.312595474 1.337995011 1.348493854 1.390703577 1.326853867 121495548 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.821447026 0.84828635 0.833002337 0.809036405 0.829976153 0.83991442 0.860114618 0.816709446 0.787226495 0.856723902 0.806949677 0.811730485 0.865294948 183217828 amyA Bifidobacterium animalis subsp. lactis HN019 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 1.007168908 0.980894472 0.934762957 1.004943074 0.900114418 0.971258093 0.899379066 0.946590855 0.982784782 0.960888036 0.921695782 0.949808216 0.901882204 0.869471027 0.882184065 0.909110044 0.984289424 0.985293368 113526567 bphF1 Ralstonia eutropha H16 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 0.852835352 0.804326865 0.856037141 0.872859 0.835704892 0.814646745 0.828165232 0.877487467 90105593 PRI Rhodopseudomonas palustris BisB18 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.748359929 0.818078041 317122441 mer Thermaerobacter marianensis DSM 12885 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Thermaerobacter;species:Thermaerobacter marianensis; 1.107306262 1.059805871 1.104378791 1.151680286 1.112131466 1.098710183 1.134399606 1.150682239 1.15526913 1.036898937 1.095959173 1.098323542 1.099179219 1.001634924 1.088799444 1.062734952 1.131212478 1.064414481 209401598 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.213338075 1.183611435 1.145403186 1.216608598 1.13870182 1.143403066 1.152281667 1.174280164 1.195606922 1.14333331 1.142449372 1.170963502 1.146611815 1.099070969 1.113075636 1.132476105 1.1840368 1.134822782 336178840 mannanase Frankia symbiont of Datisca glomerata Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.151972321 1.155082027 1.116791589 1.152125396 1.1543119 1.119698122 1.136540248 1.128515904 1.127768695 1.154537824 1.140062568 1.152120687 1.105740459 1.113615991 1.09569124 1.118575781 1.122602427 1.141140939 363415665 PRI Acidovorax sp. NO-1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 1.171759642 1.182795796 1.129668244 1.114289729 1.139035387 1.15665387 1.090848619 1.117972954 1.122399319 1.161363293 1.12020534 1.115436524 1.097672325 1.113461971 1.0849166 1.106230182 1.189196311 1.157218472 780709 nifh unidentified marine eubacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.979844341 1.066489517 0.970825505 0.984076769 0.959917296 0.976935913 0.954614754 0.959718141 0.954381326 0.960389749 0.944751869 0.960905819 0.951936507 0.948645237 0.935123874 0.961315216 1.001455958 0.968504534 358243376 cutinase Gordonia araii NBRC 100433 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 1.03519546 1.003238637 1.021446218 1.000260341 0.985418524 1.014500137 1.021796181 1.030819914 0.979801533 1.022607018 0.993782481 1.008544578 0.958464419 0.97519727 0.956021858 0.973977708 1.041065082 1.042076856 284028538 chitinase Kribbella flavida DSM 17836 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 0.836439489 0.937208827 0.811941902 0.869905127 0.905506486 0.920742652 0.864152214 0.918129573 0.863391995 0.870920976 0.902861269 0.86000145 0.882822016 0.875006952 0.911139048 0.886475009 0.930527271 262201881 amie Gordonia bronchialis DSM 43247 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 1.006863483 1.035311518 0.946859608 0.93682016 0.945356695 1.04503053 0.913952132 0.937234133 0.923930315 0.947295822 0.909194645 0.966088284 0.881337872 0.934035078 0.860344922 0.95592114 1.086131527 0.987847304 254271889 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 1.048665539 1.079064143 0.988916574 1.06097384 1.026645734 1.086345456 1.039228554 1.056274719 1.053964073 1.055881048 1.026033972 1.048372054 1.01944153 1.012616486 1.017251816 1.04532524 1.048509265 1.038447209 192764222 nifh uncultured prokaryote Nitrogen Nitrogen fixation NA 0.822732583 0.882562345 0.822433178 0.818060789 0.810348966 0.826644888 0.844764729 0.9113942 0.834959832 0.823233787 150964166 amyA Pseudomonas aeruginosa PA7 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.852588798 0.783824255 0.820001874 0.788767339 0.846697331 0.807373456 0.782363614 0.826014576 321165351 acetylglucosaminidase Granulicella tundricola MP5ACTX9 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 0.925622451 0.961076985 0.900986693 0.911219493 0.847225175 0.913653115 0.918003567 0.899597612 0.913406491 0.909010347 0.869967248 0.91421493 0.876238351 0.84474111 0.854738392 0.902926626 0.925898131 0.95025371 347530930 ara Roseburia hominis A2-183 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 0.820656602 0.847404183 0.767890233 0.821439898 319646494 cysJ Bacillus sp. BT1B_CT2 Sulfur Reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.937099877 1.013835827 1.117548417 1.000440602 1.062009714 1.109969085 0.989564187 1.013483591 1.059058358 0.897944889 0.959479724 0.973750872 0.939247882 0.930314744 0.926332355 1.098114612 1.04538192 0.984792186 327177916 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria; 1.046724568 1.094144228 1.060571449 1.088117424 1.094832374 1.126747864 1.1025428 1.099723859 1.068741169 1.142406579 1.081578166 1.089335606 1.088630241 1.085520869 1.042294836 1.100254234 1.103222065 1.101751022 69276911 fthfs Mesorhizobium sp. BNC1 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 1.040971096 1.009019045 0.998518249 1.04023713 1.01300458 1.01437171 1.008989133 1.026060214 1.006267977 0.989253609 1.00305567 1.014004845 1.007181954 0.967976374 0.963611696 0.978794119 1.042779206 0.99083644 78356157 aps_apra Desulfovibrio desulfuricans subsp. desulfuricans str. G20 Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 0.849000433 0.818215994 0.818365157 0.839744623 0.939577356 0.806826527 226834711 xylanase Actinomyces urogenitalis DSM 15434 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 0.864764341 0.854678673 0.891529021 0.832908657 0.868162284 0.890071761 0.889021563 0.867660044 0.874878531 0.871010656 0.861095975 0.85925031 0.857674424 0.844182005 0.804064553 0.866882998 0.900984034 296283048 ppx Citromicrobium bathyomarinum JL354 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 1.198710699 1.202946442 1.19541496 1.215709692 1.199561267 1.228807677 1.218451262 1.188767094 1.200830526 1.211068484 1.212620915 1.225268701 1.173016401 1.181419258 1.146711232 1.181862465 1.182114596 1.185405334 171464945 mer Dyella sp. Is-D134 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 0.898751549 0.901846583 0.896785619 0.922313095 0.88583924 0.862049359 0.866655141 0.867037999 0.91480049 0.951722827 0.935230815 0.935575908 0.828499997 0.817974598 0.81801716 0.837273249 0.933813587 0.926709217 390569827 B_lactamase_A Burkholderia terrae BS001 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.859081013 0.872912265 0.860295043 0.849859745 0.863472944 0.839078754 0.819362189 0.853858477 0.815521668 0.837934999 0.867525156 0.851973061 212009768 amyA Thermococcus onnurineus NA1 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 1.100151351 0.988776381 1.183021882 1.016676991 1.055688159 1.032099303 0.97023738 0.967250178 1.107180194 1.0453064 1.128943079 1.087146112 0.974358492 0.910848827 1.066304873 1.052892757 1.050785947 1.053748607 56553604 phospholipase_C_fungi Cryphonectria parasitica Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Diaporthales;family:Cryphonectriaceae;genus:Cryphonectria; 1.205892683 1.171358681 1.16472803 1.22096416 1.141238996 1.17203979 1.147210997 1.185079243 1.200625643 1.164766105 1.153515115 1.170874682 1.110215803 1.120791095 1.113759585 1.136295448 1.189343302 1.163578978 392185935 mhpa Mycobacterium massiliense 2B-0912-R Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 1.278343609 1.233166608 1.235376978 1.21757092 1.200627064 1.205698337 1.172931378 1.165111766 1.218517393 1.221804046 1.210865951 1.211599159 1.198449734 1.196032399 1.176306436 1.208432779 1.242931322 1.235446547 34494872 urec Haloarcula vallismortis Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula; 0.781831977 0.814855452 0.824031195 0.824396185 0.835084612 0.804531657 0.964890751 0.843990998 0.859517114 71556145 mdld Pseudomonas syringae pv. phaseolicola 1448A Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 1.184691916 1.108004693 1.14256451 1.160041916 1.118988147 1.129368137 1.148670026 1.143619032 1.145591133 1.16079252 1.155810434 1.148538369 1.129562465 1.147848856 1.109508225 1.147297014 1.138084262 1.140922327 212171500 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.092623752 1.067004523 1.017935451 1.055791942 1.007043717 1.048035288 1.00391688 1.050743022 1.039197959 1.044924435 1.015604917 1.062751785 0.972220471 1.001057766 0.950632668 1.015640654 1.056526869 1.054437938 346223725 xylanase Anaerophaga thermohalophila DSM 12881 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga;species:Anaerophaga thermohalophila; 0.82668439 0.847127581 0.800378024 0.82796101 0.799412295 0.804525146 0.799718009 0.811034667 154350630 amyA Bacillus amyloliquefaciens FZB42 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 0.891771924 0.911369868 0.857522152 0.884723505 0.861811312 0.928326572 0.875187873 0.887192596 0.900822801 0.906594599 0.843582017 0.883273852 0.851208748 0.890932029 0.858454505 0.864727548 0.915755966 0.976821241 292815637 IcfA Achromobacter piechaudii ATCC 43553 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 1.124808887 1.155005779 1.08936171 1.129915832 1.070785986 1.113516055 1.084599036 1.091796709 1.115562884 1.112757518 1.067060525 1.114027536 1.076372888 1.077538211 1.068971224 1.077942195 1.120743025 1.126162854 237879427 B_lactamase_A Burkholderia glumae BGR1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 0.899590764 0.8915342 0.931308042 0.880764002 0.815103783 0.913895665 0.856276761 0.885991749 0.889431902 0.887504586 0.895490062 0.808875529 0.909134645 0.977141287 0.858860655 0.956203089 0.94008481 282950380 amyA Citrobacter rodentium ICC168 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 0.839354672 0.869529658 0.905355211 0.877561456 0.83725111 0.852617771 0.854163833 0.853600412 0.872159242 0.856481287 0.872385812 0.837984599 0.851774888 0.834637939 0.850273128 0.837346202 0.857524756 0.875148749 291436747 bphd Streptomyces ghanaensis ATCC 14672 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.140539675 1.139653749 1.085458819 1.152239607 1.090157706 1.1567234 1.049774839 1.078147313 1.076600323 1.098486103 1.079178 1.101203737 1.06399175 1.127854176 0.982567777 1.04874481 1.154100754 1.136599042 285019798 poba Xanthomonas albilineans GPE PC73 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 1.108836841 1.067414174 1.062420179 1.082172601 1.012168549 1.064802335 1.019995679 1.040906601 1.057993114 1.033965023 1.046762694 1.057128304 1.037245069 1.028860889 0.992350471 1.035351292 1.078113875 1.062351494 404252957 B_lactamase_A Sphingomonas sp. PAMC 26621 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.096458445 0.945981551 0.994173831 0.922823117 0.900806003 0.905154097 0.907556831 0.962386251 0.937466262 0.942514046 0.845525589 0.929534801 0.899377186 0.932440457 342320646 glx Rhodotorula glutinis ATCC 204091 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Sporidiobolales;genus:Rhodotorula;species:Rhodotorula glutinis; 0.778989871 0.790766879 0.800455872 0.8397465 0.81650372 0.804307951 0.849182384 0.830654696 198033775 aps_apra endosymbiont of Oligobrachia haakonmosbiensis Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.766348214 0.810354435 0.77264162 0.799871973 157804738 APS_AprB Thiocystis violascens Sulfur adenylylsulfate reductase NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 0.890437174 0.901131158 0.916632107 0.886348144 0.836176123 0.834759388 0.841980238 0.807473274 0.897590482 0.921214396 0.879096063 0.894612084 0.856605041 0.862763722 0.810323571 0.825865554 0.917130212 0.919006386 156446817 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.038891421 1.078322175 1.019156042 1.062924741 1.022581115 1.043779574 0.987787261 1.029522691 1.047653664 1.045248841 1.043748918 1.016152068 1.027865941 0.996578413 0.986366433 1.009811998 1.048951103 1.056587643 118591562 PRK Stappia aggregata IAM 12614 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 0.921266172 0.927257445 0.908976075 0.957494806 0.918864306 0.880345175 0.89625837 0.824754314 0.955151831 0.928638711 0.938803885 0.963108644 0.862571707 0.883042241 0.848433412 0.900975495 0.914027917 0.918728241 237624361 fccab Thauera sp. MZ1T Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 0.852633063 0.8461025 0.876199986 0.823710839 0.861234795 0.843845055 0.823394003 0.848365766 0.810094305 0.854993 0.834450386 0.878890146 371760819 ppk Lactobacillus kisonensis F0435 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 1.077170201 1.064359397 1.084177754 1.121033936 1.088064938 1.117506387 1.103945378 1.101885697 1.131852413 1.095330488 1.082523528 1.102013276 1.039699432 1.037364974 1.043312175 1.056169268 1.089524276 1.094433118 398059062 nfsa_2 Rhizobium sp. CF080 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.906740521 0.958784138 0.9060648 0.890976915 0.87145169 0.932207479 0.839180096 0.917207922 0.92365843 0.906753725 0.891050157 0.913673395 0.837125698 0.87267442 0.834276436 0.865824059 0.896188979 0.946560347 91977440 chnd Rhodopseudomonas palustris BisB5 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.791864531 0.801595318 41398632 nirb Mycobacterium avium subsp. paratuberculosis K-10 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.99185041 1.003828166 0.998334705 1.025901641 0.978572516 0.987366514 0.947075831 0.957579017 0.983967564 0.965935236 0.973148852 0.998808006 0.950560164 0.940028257 0.941473124 0.940504141 0.991082938 0.999653566 25990810 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.819033403 0.842001407 0.863053237 0.805839945 0.816923794 0.829952555 0.889552759 0.891196579 0.806440287 0.842053373 0.844994464 0.846661452 0.870348821 0.814000606 115519664 amyA Rhodopseudomonas palustris BisA53 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.220970983 1.212746691 1.192814652 1.231781954 1.200998151 1.233137948 1.200486541 1.231255401 1.190914479 1.175823244 1.195716542 1.184608916 1.177047356 1.16604147 1.198479275 1.172826699 1.23662803 1.192856285 241759012 cysI Neisseria flavescens SK114 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 1.181666855 1.178737005 1.187123404 1.186978116 1.199285623 1.221016634 1.197539919 1.205410469 1.181298832 1.181764433 1.191836968 1.179166448 1.169033118 1.137586906 1.131479851 1.168234755 1.206963073 1.17876165 121709930 lactase_fungi Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 1.263035635 1.28419615 1.234298188 1.277649015 1.268554526 1.259771296 1.225885363 1.253254487 1.228100168 1.225222198 1.242680378 1.250269326 1.225304956 1.181318763 1.311413249 1.222828752 1.245748154 1.22815703 62131452 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.909200226 0.862523447 0.894180945 0.865475112 0.863309259 0.820749103 0.839973305 0.888896823 0.897991951 0.849604411 0.831940037 0.845668012 0.859004051 0.83539717 0.903232335 0.838643627 373252821 terc Nesterenkonia sp. F Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 0.800284834 0.797103763 0.80710788 0.799521012 0.804343922 0.787883377 0.812783074 0.846867706 0.781634722 0.802645567 0.839323187 139003062 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.984587946 0.957823349 0.982874089 0.970191244 0.936195326 0.949085263 0.927550935 0.970766149 0.977930115 0.954242769 0.925902869 0.984439026 0.950908633 0.913288138 0.909617359 0.885269551 0.955516415 0.973167518 134081588 atza Aspergillus niger Organic Remediation Herbicides related compound NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 1.117501697 1.102273443 1.117219302 1.138146618 1.091911779 1.095123115 1.100880096 1.106222139 1.127305609 1.087735981 1.078985019 1.075209304 1.063190054 1.043734718 1.033627498 1.029621263 1.130118788 1.092249223 255292567 bphc uncultured bacterium Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria; 0.973825833 0.878948886 0.86139793 0.913940972 0.891070381 0.961744498 0.886556651 0.849848558 0.885010244 0.927411435 0.853480488 0.851575523 0.857417894 0.885819542 0.97541859 0.869577962 0.935366599 0.927286198 361052732 pgk Sulfobacillus acidophilus DSM 10332 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 1.043296201 1.018188983 0.992690167 1.039365239 1.031919288 1.030796323 1.016757725 1.056201398 0.99601669 0.960743855 1.015863351 1.040146759 1.029054906 1.03051807 0.981737121 1.001794833 1.02167348 1.010400762 334341835 dsra Desulfotomaculum ruminis DSM 2154 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 0.86477442 0.835339971 0.809879428 0.862624979 0.870761238 0.827782939 0.842500378 0.816948393 0.829767796 0.825831397 0.803382834 0.807454492 0.819608703 0.853622293 0.779004494 0.822192046 356690790 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.859980145 0.897992738 0.870754921 0.921185434 0.842681487 0.891210886 0.886754023 0.902065984 0.89555267 0.895486965 0.906727033 0.894996611 0.841545568 0.850486787 0.796002416 0.835944511 0.92731539 0.899748179 293604339 FBPase Achromobacter piechaudii ATCC 43553 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 0.901287391 0.951616799 0.879322111 0.937674775 0.890575101 0.893916999 0.852324509 0.878338276 0.900582523 0.873765 0.874588533 0.893457532 0.858456858 0.86904013 0.88770614 0.865071396 0.906277401 0.936123888 385867132 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.780496214 0.838038064 0.801280808 0.84807545 126732364 phn Sagittula stellata E-37 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 1.412065264 1.37821381 1.380790676 1.404924307 1.387568862 1.386483187 1.38359379 1.400808826 1.380126577 1.354183566 1.37544015 1.389469492 1.359892751 1.338489534 1.374816717 1.368320128 1.387116474 1.356292993 259022373 FBPase Rhodobacter sp. SW2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 1.344317335 1.28431388 1.263330473 1.299110257 1.249635221 1.303230122 1.23492485 1.274717525 1.271159818 1.254463838 1.274477459 1.285490283 1.245121852 1.248753488 1.233963556 1.260692161 1.297614037 1.265104343 302404838 chnb Verticillium albo-atrum VaMs.102 Organic Remediation Other Hydrocarbons NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 0.842372361 0.840321525 0.898638878 0.88119142 0.922454615 0.847424204 0.93102527 0.924050991 0.914866721 0.917252458 0.888830287 0.910077694 0.901489811 0.816230406 0.835088188 0.834733664 0.898523319 0.841851707 358639640 arra Azoarcus sp. KH32C Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.362644746 1.311802097 1.28726667 1.323898887 1.274995961 1.316543953 1.264565756 1.297699548 1.323098452 1.30637317 1.283646566 1.296845799 1.268856096 1.221431332 1.216481089 1.27514668 1.348859157 1.308498756 226347084 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.011599274 1.013572792 0.967663362 1.020243098 0.933529103 1.000400352 0.983829552 0.962317934 0.95370648 0.941856061 0.925755463 0.987115393 0.965540318 0.941195697 0.966810422 0.942788486 0.98752463 83837205 dmdA Roseovarius nubinhibens ISM Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 0.888119813 0.906767124 0.935513187 0.848833717 0.945468271 0.979171922 0.896808404 0.911300128 0.900840519 0.933403497 0.900419955 0.910475133 0.93453054 0.905737639 1.042112044 0.8658619 0.979900769 0.985828562 37266291 phytase Obesumbacterium proteus Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Obesumbacterium; 0.928589897 0.964404978 0.819711507 0.998504145 0.897753778 0.889597919 0.890918122 0.939077599 0.944806731 0.91609118 0.882770675 0.944522507 0.851987241 0.84410234 0.880312961 0.938169763 0.928286883 133912307 mdlc Saccharopolyspora erythraea NRRL 2338 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.029957545 1.049895686 1.020797001 1.02473172 1.037386989 1.023377965 0.988898187 1.003105826 1.009157678 1.023301836 1.02414509 1.008772354 0.988633079 0.996213184 0.977263032 0.98355155 1.021639622 1.034054875 238592280 p450aro Moniliophthora perniciosa FA553 Organic Remediation Aromatics polycyclic aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.903499737 0.916791964 0.871727744 0.956181236 0.885877923 0.890582148 0.8874574 0.887188073 0.899822144 0.874904498 0.879447775 0.896607907 0.885871317 0.885115562 0.873846489 0.877191791 0.943332357 0.917786346 371583932 mer Corynebacterium diphtheriae BH8 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 1.407876738 1.372440772 1.362123004 1.382520803 1.338790185 1.393485674 1.333910021 1.361741846 1.354858283 1.346620693 1.353762029 1.352842115 1.328323355 1.32108041 1.333579336 1.357607245 1.387490945 1.350513101 227190666 badh Lactobacillus brevis subsp. gravesensis ATCC 27305 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 1.029756028 1.029416735 1.001417298 1.061106891 1.012515041 0.996760106 1.036559411 1.022355265 1.092904983 1.02355644 1.000400286 1.030712057 0.988661088 0.973508872 0.933141035 0.983897574 1.024913344 0.98672935 76056987 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.206109643 1.26446012 1.180849483 1.229764074 1.211319936 1.245631145 1.158801301 1.208147859 1.208549953 1.226866792 1.193180926 1.219719216 1.212740324 1.192082382 1.166963883 1.217162398 1.243657471 1.237762724 325290931 nifh Syntrophobotulus glycolicus DSM 8271 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Syntrophobotulus;species:Syntrophobotulus glycolicus; 1.228123799 1.065129856 1.080969972 1.086098429 1.052641182 1.099351304 1.054277455 1.028808514 1.098055649 1.040167453 1.053495814 1.054057544 1.015074617 1.005402475 1.027923344 1.023662649 1.111734764 1.084570015 384040825 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.846296621 0.783110463 356690623 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.988353621 0.926146979 0.982162372 0.968331996 0.888851306 0.92034374 0.916378734 0.922383764 0.950142937 0.948329866 0.950819444 0.955550116 0.924158923 0.917450494 0.883416866 0.913823146 0.974158119 0.965890615 355373223 terc Selenomonas infelix ATCC 43532 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas infelix; 0.851629351 0.856231611 0.965590889 0.920380905 0.94401199 0.920191126 0.946956481 0.944291908 0.926166625 0.932360003 0.889098071 0.91157403 0.854938821 0.856522663 0.856953773 0.866444046 0.918516876 0.921862821 334343547 tfda Sphingobium chlorophenolicum L-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 1.021408575 1.076315959 1.013758287 1.045391381 1.020299822 1.082473449 0.996355321 1.02143589 1.036466347 1.024782961 1.024160094 1.032950278 1.011470594 0.993787183 0.960537503 1.032331167 1.062861643 1.07611658 298599970 cysJ Acidobacterium sp. MP5ACTX8 Sulfur Reduction NA superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 1.018217069 0.954516685 0.921162566 0.98356485 0.925106937 0.964908368 0.906142904 0.901736812 0.960367587 0.956202918 0.911909788 0.925998392 0.946308067 0.907657151 0.858784016 0.921328553 0.981279109 1.006443885 383640620 poba Sphingomonas elodea ATCC 31461 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 1.174920075 1.174161297 1.163946615 1.184383162 1.205350272 1.188568384 1.178093349 1.177728241 1.161750489 1.178026013 1.186403386 1.172421717 1.124356457 1.148502723 1.094702517 1.155694021 1.175955014 1.193158248 359278874 IcfA Synechocystis sp. PCC 6803 substr. PCC-P Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 1.042683691 1.02008681 1.005045025 1.050518429 1.000927435 0.980564763 1.01592766 1.00517168 0.993399218 1.004050226 1.004357468 0.992896077 0.974917168 0.987882287 0.981058033 0.969271252 1.03754147 1.004726107 156188199 mauab Methylobacterium chloromethanicum CM4 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 1.279618735 1.27312497 1.229109657 1.268734519 1.244136571 1.30064405 1.217856165 1.244839349 1.236399237 1.23261744 1.238231082 1.251110022 1.224025747 1.230225047 1.196881325 1.236219495 1.253526831 1.248227332 206685159 FBP_aldolase Rhodobacterales bacterium Y4I Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 0.888568198 0.901676234 0.903663839 0.929303318 0.921857186 0.912200226 0.922317512 0.88306951 0.889532079 0.910153802 0.902885673 0.935405996 0.93141142 0.91074358 0.882005392 0.928075029 0.917333305 0.90790934 302410213 Glucose_oxidase_fungi Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 0.798114902 0.811128994 0.772325546 0.821243041 0.783565593 0.80184111 0.81159074 0.822465215 0.860099173 0.784517835 0.813073226 242238757 phn Dickeya dadantii Ech703 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 1.173570795 1.142916403 1.168768198 1.205162709 1.157921913 1.191609011 1.180150209 1.166502927 1.179530445 1.169034814 1.167337134 1.182017728 1.11919887 1.11968615 1.136704999 1.143532282 1.17471347 1.152088308 197711271 RgaE Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.090607963 1.147285894 1.074836258 1.086606847 1.086441622 1.127882963 1.073350824 1.049290881 1.083016974 1.131183404 1.111343792 1.126484298 1.089767544 1.094669583 1.051510052 1.109512693 1.080290095 1.14679837 270334236 amyA Prevotella bergensis DSM 17361 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 0.841239744 0.824861756 0.814620934 0.823412413 0.862299143 0.804664857 0.803318182 0.809057814 0.837216406 0.840251541 0.866928614 350635352 mdlb Aspergillus niger ATCC 1015 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.827055463 0.878511303 0.857844115 0.852344005 0.794987867 0.81135667 0.7871697 0.846697187 0.801051576 0.845482629 209531358 FBP_aldolase Gluconacetobacter diazotrophicus PAl 5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 0.820796391 0.860110889 0.844274945 0.862095206 0.817126116 0.867440697 0.815418237 0.843315853 0.848507671 0.820194503 0.800399451 0.830389456 0.847053216 0.85455087 227077392 cutinase Corynebacterium accolens ATCC 49725 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 0.797121679 0.831898789 0.842946091 0.844882406 0.809237308 0.828718232 0.852003132 0.813895456 0.824521253 0.830413044 0.834568335 0.874593327 225568285 CsoS1_CcmK Clostridium hylemonae DSM 15053 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 0.907148182 0.854957029 0.850722595 0.836028467 0.846561184 0.824648914 0.909117831 0.825016613 0.831214307 0.860021389 0.830453509 0.907261634 76666785 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.025919812 1.115907749 1.016319608 1.115871303 1.031235508 1.046639153 1.017374268 1.026109439 1.003835646 1.03765677 1.025014733 1.163226815 1.016421646 1.030741831 1.026242752 1.047459438 1.072044954 294677758 nifh Rhodobacter capsulatus SB 1003 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 0.945460859 0.914171262 0.986670601 0.947274512 0.905184712 0.874208368 0.841557752 0.887191945 0.849456991 0.845055773 0.957289622 0.938333665 0.873850312 0.919835614 0.862944456 1.063310558 0.925246354 0.960146163 150036060 SoxB Thiocystis violacea Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 1.317623048 1.28507068 1.271265124 1.270520925 1.325378947 1.361922362 1.302281071 1.173460959 1.204130406 1.36080408 1.248175784 1.270765597 1.251435276 1.318421269 1.305958037 1.247406698 1.284890719 1.301439008 320102603 fthfs Isosphaera pallida ATCC 43644 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 1.012738034 1.021527107 1.101446623 1.083220742 1.097723804 1.094759039 1.106097487 1.071656153 1.071802801 1.080400154 1.099864693 1.093908844 1.038644621 1.035579011 1.04768908 1.046943301 1.062914079 1.068145769 238059669 xylanase Micromonospora sp. ATCC 39149 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.114238536 1.042691329 1.17949204 1.077600453 1.106042883 1.122579179 1.075775931 1.077825811 1.136126135 1.081683772 1.084925163 1.106386934 1.108456251 1.091050971 1.205725349 1.097925947 1.152106966 1.099080349 67088759 arsc Azotobacter vinelandii AvOP Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 1.016993112 1.040474518 1.028194042 1.036701301 1.040688287 1.012126613 1.01713231 1.039073352 1.045837997 0.99841311 1.041931953 1.003261893 0.964661302 1.02129763 0.981200932 1.02417668 0.980231957 0.981234538 153852900 bco Dorea longicatena DSM 13814 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea longicatena; 0.951704163 0.912211437 0.913731744 0.984990198 0.912305769 0.914237099 0.897562961 0.911373645 0.949109414 0.906266846 0.9023342 0.951455966 0.928203556 0.878580916 0.911129755 0.868829982 0.960212044 0.908168352 341935574 pectinase (pectate_lyase) Xanthomonas campestris pv. raphani 756C Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 0.84875108 0.833167131 0.845135877 0.807374833 0.850278131 0.826728506 0.834516849 371776257 amyA Anaerophaga sp. HS1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga; 0.777308238 0.789070274 0.817110881 0.776530239 321161583 amyA Granulicella tundricola MP5ACTX9 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 0.988244949 0.921151766 0.958033778 1.002731302 0.939971938 0.974430618 0.962325225 0.998851974 0.941217008 0.910441945 0.949224489 0.942197105 0.867160142 0.896235359 0.853330576 0.87374494 0.960104526 0.98406147 197106169 terc Phenylobacterium zucineum HLK1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 1.197134009 1.196948155 1.114150785 1.196948394 1.14855858 1.171834319 1.150475365 1.153589109 1.176236895 1.108767617 1.142698256 1.179116682 1.138354681 1.092512741 1.112029311 1.134486 1.146439341 1.145723906 28853374 mdld Pseudomonas syringae pv. tomato str. DC3000 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 1.195610192 1.180448119 1.179539651 1.172315649 1.175667014 1.188728623 1.151183594 1.165065828 1.189959543 1.1781404 1.161488594 1.176279383 1.159565155 1.130329077 1.130487724 1.138366237 1.20669471 1.182394192 330994236 cpna Gluconacetobacter sp. SXCC-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 0.951397002 0.945680222 0.963358156 0.902939177 0.910651751 0.928361611 0.830744806 0.962073653 0.973969376 0.890263196 0.874038035 0.924976387 0.857562446 0.915468303 0.859188352 0.85462128 0.92488405 0.945740072 238060164 terc Micromonospora sp. ATCC 39149 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.010519593 0.989993772 0.980759923 1.000918312 0.949215992 1.02250727 0.985580685 1.005089726 0.998705543 1.004395253 0.958931558 1.008444231 0.934888506 0.961816506 0.921256692 0.906497832 1.007976695 1.03142565 332270601 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.758330528 0.814128563 258569445 endochitinase Uncinocarpus reesii 1704 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 0.833762281 0.817486606 0.853779554 0.851401744 0.892755913 0.815073015 0.857701659 0.867167179 139478615 mer uncultured actinobacterium Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 1.019560142 1.168932316 1.009850614 1.101806288 1.10638904 1.115845189 1.108780726 0.98759441 1.042678162 1.051955055 1.046118652 1.059703442 1.053358414 1.050009723 1.048222807 1.08162716 1.032542013 1.044317503 226347232 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.874758223 0.887967887 0.841487751 0.909159286 0.889740003 0.877663091 0.881538185 0.874863061 0.894679905 0.839611473 0.845359118 0.836638209 0.883880976 0.836260935 0.835740089 0.900107898 0.898979327 108799771 urec Mycobacterium sp. MCS Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.062570125 1.080505848 1.072889898 1.053925197 1.056315873 1.070938473 1.047025012 1.132214285 1.065094008 1.077340481 1.050987536 1.056458869 1.038902811 1.051281999 1.01562512 1.056550173 1.114101845 1.117615999 344925148 nitro Candidatus Odyssella thessalonicensis L13 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;genus:Candidatus Odyssella;species:Candidatus Odyssella thessalonicensis; 0.810323861 0.817337049 0.862550245 0.781960968 0.822747272 0.853939959 21929222 mnp Phanerochaete sordida Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 1.517207543 1.458852055 1.463092578 1.451613929 1.424702489 1.502682037 1.407012926 1.444711509 1.447871931 1.464568419 1.456239508 1.451427514 1.421471716 1.427284885 1.395246283 1.438313905 1.471839619 1.461803943 120563162 amie Desulfovibrio vulgaris subsp. vulgaris DP4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 1.134457 1.15849271 1.128501012 1.146326681 1.120281262 1.156327107 1.11747667 1.122451403 1.134726684 1.148571728 1.125987305 1.122842596 1.126745908 1.119994888 1.098098488 1.122829937 1.176174584 1.151174713 296164722 cdh Mycobacterium parascrofulaceum ATCC BAA-614 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 0.907530287 0.934503413 0.935809903 0.956152621 0.938286115 0.885137369 0.948975287 0.993537429 0.962271362 0.907404148 0.918116243 0.928601064 0.869342618 0.847397133 0.859604154 0.823120746 0.938938613 0.872095821 374922655 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.037222325 1.014152831 1.020693863 1.051747814 0.975477057 1.00739591 0.981068535 1.030397903 1.016759927 0.994187126 0.977608374 1.027585503 0.978451821 0.989831557 0.983367166 1.010654783 1.024416613 1.017453187 83026026 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.866192878 0.899275531 0.803928773 0.784890671 158333063 arsc Azorhizobium caulinodans ORS 571 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 1.227878677 1.256962752 1.228799434 1.241108867 1.241552767 1.27474036 1.22475418 1.217928489 1.222071874 1.239027128 1.251318466 1.2578798 1.229933708 1.237750919 1.219461399 1.253791577 1.220421057 1.237428383 56798407 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.911456014 0.900559736 0.932288011 0.887089407 0.894727902 0.891172971 0.904993371 0.935890593 0.909370683 0.838064758 0.833951591 0.856896102 0.860155566 0.866861525 0.848122181 0.96242137 0.887719479 294488859 mcra uncultured archaeon Carbon Cycling Methane Methanogenesis superkingdom:Archaea; 0.751495659 0.811769293 330688052 aoxb uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.936509511 1.041583142 0.952221187 0.973995091 0.956537736 0.965932168 0.927855499 0.901615194 0.921615231 0.962374605 0.928813446 0.950411449 0.927054258 0.945636986 0.915642043 0.931011674 0.946434529 0.95211588 237686956 phytase Teredinibacter turnerae T7901 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 1.082601777 1.013422199 1.006460055 1.035130554 1.029323235 1.001990216 1.022171935 1.044232734 1.058681266 1.065708023 1.011023948 1.022654292 0.987053356 1.005934828 1.003419227 1.002366226 0.992893927 1.029484465 83592694 TIM Rhodospirillum rubrum ATCC 11170 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 0.861908276 0.89047334 0.882152905 0.929088666 0.9049129 0.935839848 0.873200744 0.901267297 0.849775529 0.890223126 0.904650067 0.854374758 0.914674222 0.858852464 0.896168344 0.890103195 0.937809085 0.898899712 254504072 phn Labrenzia alexandrii DFL-11 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 0.802570839 0.835872196 0.823352491 0.799423823 0.833691981 0.818350349 0.848136041 0.833914126 0.879253296 384102127 amyA Rhodococcus imtechensis RKJ300 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 0.799236156 0.935427152 0.853362445 0.860467592 0.933142054 0.943970743 0.868977858 0.883167983 0.850705211 0.936949158 0.882033544 0.90580024 0.900349118 0.90722217 0.872735881 0.928069522 0.900210784 0.902018875 6523535 nifh uncultured microorganism SN-13 Nitrogen Nitrogen fixation NA 1.236298142 1.188566648 1.202900369 1.228054798 1.212545239 1.192999727 1.201388396 1.214366075 1.219974837 1.200525008 1.238158363 1.22316645 1.175571054 1.147392092 1.132898939 1.142638385 1.186644637 1.144377844 356663200 xylj Rhodococcus opacus PD630 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.364637687 1.34470681 1.31274483 1.352194271 1.299574946 1.355846112 1.276044877 1.294464283 1.270633364 1.299954316 1.28252358 1.304208314 1.293621953 1.278258894 1.270390587 1.292786563 1.371118826 1.312479721 319742105 narg Lautropia mirabilis ATCC 51599 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 0.871918951 0.921347176 0.808743404 0.886351026 0.921585057 0.900439147 0.884489415 0.929446615 0.980874907 0.823601034 0.865290401 0.875342134 0.855547193 0.902467124 226242593 badh Rhodococcus opacus B4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.846734056 0.876495433 0.854154864 0.805438148 0.888951012 0.862434054 0.86841128 0.867996406 0.879999234 0.87878889 0.865312118 0.849961231 0.820555188 0.84211923 0.795337601 0.845230356 0.871814438 0.862611121 37222142 amyA uncultured bacterium Carbon Cycling Carbon degradation Starch superkingdom:Bacteria; 0.81000545 0.868876248 119863768 nosz Psychromonas ingrahamii 37 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 1.133117993 1.092661005 1.078198236 1.084863307 1.095239093 1.094945398 1.089324002 1.075522691 1.129961322 1.061912653 1.102980353 1.101934155 1.085949911 1.062507453 1.125781207 1.028254743 1.086560381 1.073798754 219861464 pcag Arthrobacter chlorophenolicus A6 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.868038267 0.81015826 0.834387041 0.909134743 0.90700364 0.839675425 0.905793124 0.976052395 0.921082462 0.865312409 0.854930624 0.918435979 0.864458188 0.846582121 0.86960403 0.856011455 0.890809511 0.852884216 206563958 bphF1 Burkholderia cenocepacia J2315 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 0.783904944 0.773525276 0.812263826 0.760549489 0.777770587 0.81052336 0.81501742 0.817919142 0.828093538 184200841 terc Kocuria rhizophila DC2201 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 0.873564609 0.858318111 0.86532903 0.8836557 0.891874353 0.878432494 0.89527683 0.894175437 0.876723295 0.882329892 0.902923388 0.852184089 0.856483308 0.843770365 0.811688327 0.823908715 0.880033368 0.904888173 372488222 pgk Dechlorosoma suillum PS Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azospira;species:Azospira oryzae; 1.238680771 1.238531495 1.224444448 1.21965448 1.196618915 1.2530008 1.213055312 1.198089646 1.1936635 1.212943947 1.197687269 1.213490445 1.168263419 1.169733125 1.125050761 1.192178911 1.222309696 1.225540007 225021451 fthfs Corynebacterium matruchotii ATCC 33806 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 0.977802149 0.954603557 0.961817893 0.996550497 0.999402501 0.951988287 0.983078857 0.970125874 0.97095879 0.98664243 0.969134459 0.986324631 0.959042681 0.912360324 0.906976662 0.938356316 0.946516317 0.924045168 303282825 Sir Micromonas pusilla CCMP1545 Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 1.057605938 1.036295951 1.008187703 1.040724211 0.975636938 1.021065953 0.975928503 1.012804982 1.038729022 1.010933574 1.004031386 1.003423135 0.990718964 0.999175004 0.993475422 0.995731088 1.04716111 0.989228585 73534215 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.80321022 0.987340617 0.860173743 0.846203185 0.861659123 0.909990859 0.85588018 0.875481786 0.856014771 0.824903351 0.865337412 0.833872247 0.911778662 27381270 atzb Bradyrhizobium japonicum USDA 110 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.916892439 0.894148242 0.90807722 0.883055439 0.921586599 0.880746507 0.92957794 0.911602601 0.907647231 0.918346262 0.930689368 0.902188253 0.899795982 0.882040619 0.870687709 0.842007102 0.901380993 0.932525434 187476763 terc Bordetella avium 197N Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 1.246697016 1.202710074 1.206144519 1.219154234 1.193881796 1.211464416 1.194195392 1.201377872 1.172212786 1.188758284 1.169161367 1.206658742 1.175297901 1.164394593 1.142289112 1.224694891 1.228251912 1.162428342 300545347 amyA Streptomyces avermitilis MA-4680 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 1.028558882 1.074711419 1.052024971 1.042566882 1.014847257 1.072613418 1.028366094 1.039510915 1.028442606 1.037678682 1.027827527 1.052897928 1.00977176 1.014348306 0.983189756 1.035495041 1.038294165 1.028965175 228572122 amyA Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 0.985022357 0.948141255 0.992457853 1.000502894 1.008488312 1.034313939 0.975497683 1.003951897 1.016680127 1.006734694 0.992857601 0.997065942 0.981253982 1.003897656 0.980058711 0.95206128 0.983166686 0.986921555 374854164 tehb uncultured delta proteobacterium Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.879920084 0.897098418 0.88759468 0.909475249 0.878591356 0.89154832 0.90161454 0.883060756 0.952156637 0.932873783 0.902562257 0.909682629 0.877296568 0.842396263 0.820855327 0.840783905 0.89047527 0.9093964 259348438 nhh Silicibacter sp. TrichCH4B Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.986431531 0.998180236 0.986866715 1.000840287 1.031366543 1.041526697 1.044968574 1.0029941 0.989329283 1.052476548 1.020388042 0.999313639 0.945558438 0.973386934 0.932755163 1.004080123 0.945225029 0.986351072 264675172 amyA Caulobacter segnis ATCC 21756 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 1.319111329 1.35050427 1.291026042 1.259882282 1.283610545 1.328778856 1.334463489 1.327427241 1.326041812 1.279409451 1.292916912 1.307833436 1.275504704 1.285087977 1.298977484 1.294379713 1.288342192 1.291713328 82568648 badh Rhodococcus erythropolis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.791977161 0.878591731 0.879931751 0.865540153 0.85641808 0.824853389 0.812497482 0.823179775 0.834389305 0.822597507 0.86516064 0.846813589 0.928004011 0.858273892 0.88627235 422314453 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.980381821 0.985410096 0.960631243 1.004593562 0.956925373 0.956005928 0.958330286 0.931913217 0.957319391 0.965925793 0.985298 0.9337742 0.920121417 0.908124578 0.91865732 0.911560987 1.003866517 0.973270198 76058111 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.966592174 0.930358003 0.991121772 0.938336625 0.992767398 0.976522922 0.995963416 0.976075953 0.973134044 1.00548182 1.00209867 0.950957022 0.980494862 0.91546978 0.929672529 0.945682463 1.046992781 1.007457422 359785100 pcpe Halomonas sp. GFAJ-1 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 1.032168107 1.099931934 0.981204287 1.033134925 1.010391708 1.071749414 0.99965056 1.03950276 1.045864953 1.072463847 1.001005647 1.01861982 1.008633252 1.049896785 0.936583841 1.010606885 1.001949754 1.082226855 112462677 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.95871172 0.974130615 0.893096444 1.014064439 0.912787226 0.921676454 0.898905578 0.941512497 0.93105472 0.930236139 0.860571769 0.923345296 0.87032953 0.885747299 0.850804337 0.897310687 0.961306741 0.935320588 13249519 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.080906354 1.008641938 1.020334 1.065289708 1.022785167 1.020264028 1.017864605 1.030956745 1.07943747 0.993359022 1.004016219 1.065218298 1.000549438 0.975746473 0.980359177 1.008238297 1.060600392 1.024633153 227069639 nira uncultured archaeon Nitrogen Assimilatory N reduction NA superkingdom:Archaea; 1.184702553 1.182675501 1.147234898 1.221249665 1.161837749 1.157596541 1.168847666 1.152463847 1.144594606 1.153342514 1.144273824 1.189595868 1.136853085 1.131141526 1.155955365 1.152423938 1.180587741 1.135091203 293395633 nasa Serratia odorifera DSM 4582 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 0.801837999 0.839616348 0.785520901 0.858519313 0.853161534 0.815788491 0.78671793 0.782431328 0.822350495 0.842567772 333488662 terc Mycobacterium sp. JDM601 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.906209953 0.883150671 0.836848232 0.89405877 0.845032843 0.854660956 0.861957236 0.885838366 0.855663383 59859756 EF1a_Stramenopiles Cyclotella cryptica Other Phylogenetic NA superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Stephanodiscaceae;genus:Cyclotella; 0.906825462 0.963761132 0.837886896 0.902858537 0.907667823 0.927986054 0.866166657 0.893189522 0.849112458 0.856704333 0.928967173 0.913182474 0.868040892 0.892814252 0.844397117 0.884809861 0.874799421 0.853835256 165880025 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.87604662 0.909789793 0.840786431 0.903394148 0.845139251 0.903076347 0.872249137 0.915978402 0.907177862 0.892349876 0.84739455 0.914325711 0.837830187 0.85595478 0.90091 0.908010829 0.905306785 91691550 alkb Burkholderia xenovorans LB400 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.878611519 0.956341061 0.893830159 0.952739215 0.913827271 0.967020847 0.908885813 0.909211933 0.91669538 0.945572566 0.853545829 0.911670502 0.861124274 0.808184208 0.860158217 0.854574034 0.924095791 0.929696523 422314279 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.836080613 0.870568397 0.892934482 0.910223239 0.88240557 0.817368847 0.897128156 0.919505956 0.907054506 0.894298232 0.862776967 0.872437739 0.86477647 0.826235127 0.81951754 0.877148354 0.839093334 384371766 urec uncultured bacterium Nitrogen Ammonification NA superkingdom:Bacteria; 0.893062275 0.852357051 0.894397274 0.912377677 0.846452847 0.871155357 0.826161534 0.841034852 0.897631906 0.908411585 0.888432208 0.8763027 0.866283787 0.878932811 0.852963174 0.882323272 0.88364995 99030445 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.817477593 0.811716359 0.863306968 0.882193312 0.82634467 0.882976495 0.86871296 0.855996994 0.855301362 0.820886122 0.832808808 0.799276666 0.807941662 0.911422979 0.857585938 388062142 amyA Gardnerella vaginalis 00703C2mash Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 0.944755408 0.908939453 0.921679107 0.927555011 0.925704237 0.908011217 0.879239123 0.888966584 0.907931165 0.880548492 0.882912341 0.88185279 0.865454265 0.842532665 0.863904953 0.897322382 0.937563814 197322310 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.942394754 1.002780771 0.949504258 0.923648067 0.95757718 0.907162873 0.911302627 0.948249436 0.958639442 0.948973061 0.963656612 0.926785781 0.95134636 0.900493114 0.936112252 0.928900417 0.961249634 237785218 fthfs Corynebacterium kroppenstedtii DSM 44385 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 1.096870207 1.108035868 1.129705776 1.080442223 1.104569067 1.101358722 1.101064624 1.084382335 1.082879979 1.097660041 1.089953695 1.089740979 1.082273401 1.032018482 1.02821277 1.046731638 1.105226345 1.095543289 296825494 cellobiase Arthroderma otae CBS 113480 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 1.02954959 0.963046375 0.974306448 1.052321391 1.015015198 0.988234385 0.99307527 1.01523671 1.019081052 0.99242621 1.003191331 1.02255552 0.98338146 0.943106988 0.974085025 0.99298701 1.052176495 0.939480307 320151419 amyA Thermus scotoductus SA-01 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 0.879234195 0.874090223 0.836017957 0.923554491 0.881282252 0.909465616 0.893695 0.847791344 0.87211468 0.878687302 0.891861762 0.862587503 0.883043598 0.845295823 0.883968976 0.898519221 0.905204309 317123613 amyA Intrasporangium calvum DSM 43043 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 1.234054312 1.240018313 1.250824023 1.247317029 1.264716797 1.255357309 1.218036449 1.212487451 1.224473611 1.208070531 1.297576706 1.230836811 1.228377997 1.204121895 1.224890106 1.196731717 1.221393235 1.215447752 378590467 limeh Nocardia brasiliensis ATCC 700358 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 1.297643887 1.252740427 1.253798021 1.251401184 1.198121324 1.272001777 1.219905476 1.228798083 1.239574983 1.233241072 1.222152879 1.240733892 1.205699164 1.199352124 1.191453566 1.228965013 1.257942904 1.220276045 337746156 inulinase Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Inulin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.068563685 1.058695923 1.05880857 1.073436481 1.023663739 1.052578565 1.040991444 1.080784927 1.07832184 1.035682908 1.032770446 1.036090052 1.050513952 1.049269754 1.007668595 1.05800792 1.03700739 1.071786157 323366006 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 0.865672317 0.870371666 0.924191481 0.953943456 0.92698176 0.912721977 0.91294108 0.884657931 0.89704449 0.985842284 0.919488026 0.971315058 0.975659417 0.934925665 0.873999143 0.89516906 0.914388088 0.886749813 110824743 cpnc Rhodococcus jostii RHA1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.945769002 0.90199984 0.88209989 0.945773869 0.90234324 0.971571124 0.893323011 0.960165025 0.949090882 0.948144252 0.887996216 0.942078871 0.836053046 0.923001127 0.906755179 0.978177576 0.962888952 302558026 terc Streptomyces griseoflavus Tu4000 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 1.206686233 1.240788913 1.182693243 1.179899523 1.198710137 1.256943851 1.169045845 1.133909054 1.154792417 1.204378803 1.198284998 1.19741794 1.19444707 1.176487065 1.165508838 1.188675463 1.206166551 1.203883975 109457186 cmci Roseobacter denitrificans OCh 114 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 1.070668496 1.035495065 1.07055435 1.060377715 1.066467399 1.046786106 1.080044391 1.068234546 1.062212386 1.043875314 1.073883489 1.08466769 1.012182318 1.017565524 0.997801098 1.047715133 1.081822338 1.064386636 295689722 phytase Caulobacter segnis ATCC 21756 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 1.01702679 1.000596611 0.979952991 1.045210522 1.05534734 1.00623154 1.070279294 1.069758419 1.085857009 0.984485067 1.011355073 1.013107318 1.009839413 0.974985307 1.006980846 1.137349341 0.97680408 0.962612315 39973413 ara Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.046418649 1.057493622 1.02176065 1.051190613 1.025993052 1.056534969 1.042407212 1.040679765 1.034331109 1.04491507 1.005947463 1.063200734 1.025158237 1.001535901 0.974776836 1.045907833 1.074558228 1.041886446 315277484 chitinase Paenibacillus vortex V453 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 0.890631362 0.905035443 0.859758886 0.901029504 0.887694374 0.92874835 0.920858162 0.941585776 0.872947624 0.882461455 0.820213674 0.905220801 0.827551941 0.825206534 0.833870965 0.88794966 0.911489382 116804596 nasa uncultured prokaryote Nitrogen Assimilatory N reduction NA 0.901868671 0.88256935 0.970148681 0.981798439 0.907511547 0.927255647 0.926018441 0.969398747 0.943535223 0.931509816 0.907985529 0.949601849 0.911187299 0.854983777 0.901495711 0.903548786 0.95371662 0.979844453 199652691 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.999620292 0.999743376 0.898439476 0.933649149 0.920962921 0.928856744 0.914107973 0.915608605 0.911401081 0.898815072 0.921118511 0.920171644 0.94468372 0.875254208 0.904645424 0.910094344 0.929957859 0.946444752 211583958 cellobiase Penicillium chrysogenum Wisconsin 54-1255 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 0.829126715 0.834812361 0.833094269 0.858702131 0.825682376 0.822778373 0.800530777 0.822505562 0.848967184 0.886410282 126105539 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.757920031 0.808282589 0.76938804 0.861809045 0.794389246 0.823279058 0.796970576 0.798543404 0.773612853 0.854178886 255020282 FBP_aldolase Acidithiobacillus caldus ATCC 51756 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 1.43945312 1.384082604 1.42452687 1.432999409 1.400580381 1.435775705 1.390443856 1.395556719 1.412671136 1.424689691 1.401842094 1.41460812 1.384626213 1.397005702 1.396878316 1.399886033 1.439589412 1.388629128 327395344 terc Pantoea ananatis AJ13355 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 1.441368467 1.389614217 1.395838591 1.443560912 1.410847427 1.427041558 1.412905765 1.435238419 1.406204074 1.387231418 1.403133423 1.452327841 1.384028718 1.377833256 1.385555258 1.416298336 1.399327087 1.358095239 312194849 amyA Frankia sp. EuI1c Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.778585032 0.788830314 0.803269915 0.813822397 0.78346822 0.790895718 374322355 rgl Paenibacillus terrae HPL-003 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 0.752193137 0.824991934 0.80920156 0.836785273 146188562 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.810969979 0.828432732 0.885879741 0.870156603 0.867070228 0.860593609 0.867109702 0.86399389 0.844395875 0.813554069 0.842204595 0.836625047 0.830329388 0.887546282 226939584 ppk Laribacter hongkongensis HLHK9 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 1.113265982 1.099963278 1.093235921 1.091905351 1.05108702 1.094762452 1.044694476 1.071879326 1.083219102 1.098159079 1.056303961 1.093099813 1.040281571 1.049615411 1.048541818 1.051596439 1.111012526 1.118670565 146406836 xylxy Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.237577789 1.21821018 1.205658889 1.218372577 1.187240445 1.224966644 1.190222692 1.23478213 1.170805075 1.191657417 1.195170994 1.20945797 1.209224023 1.150203548 1.187298617 1.168678833 1.220310987 1.188509184 333488471 amyA Mycobacterium sp. JDM601 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.279948493 1.287820125 1.248244219 1.247421303 1.255963037 1.2835059 1.233573655 1.238840585 1.250027045 1.241508678 1.245026087 1.241340276 1.239923874 1.226737589 1.228474867 1.227047526 1.298896417 1.263610476 83814888 endochitinase Salinibacter ruber DSM 13855 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 0.946284587 0.87951008 0.865077225 0.869674172 0.883780598 0.933917652 0.823827445 0.890919839 0.913641148 0.86859875 0.815640573 0.938703915 0.801694569 0.834890861 0.839328123 0.863259284 0.899222728 156104506 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.990740596 0.972771117 1.016874753 1.052548924 1.005433342 1.00357333 0.960912572 0.975503845 0.989215635 0.924504621 0.952214914 0.996755926 0.950592803 0.922755907 0.908109579 0.95535298 1.012926103 0.966275853 294884121 aoxb bacterium enrichment culture clone aoxheteroA49_4W Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.914945166 0.875637193 0.888660684 0.930403291 0.905786745 0.913379073 0.920313792 0.906048519 0.896078429 0.878091372 0.884667221 0.922486302 0.833201452 0.844070658 0.851366128 0.846190627 0.926073785 0.918977273 329758681 endoglucanase Gluconacetobacter sp. SXCC-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 1.119151443 0.996198666 1.012972178 1.077394118 0.986675224 0.973922373 0.97786893 0.985484088 1.009693192 0.964745134 0.965836692 1.025145803 1.028307585 0.996921785 0.960475808 0.968209655 1.023317346 1.00501098 343461781 ppk Ketogulonigenium vulgarum WSH-001 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 0.801555471 0.812450595 0.816022933 0.807694645 0.849622443 0.834626534 0.846782811 254451080 pula Octadecabacter antarcticus 238 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 0.809123195 0.82621447 0.860169129 1.105285352 0.839683068 0.838958765 0.870726722 0.910619334 0.812157316 0.829833962 0.897566035 0.825124109 186461326 arylest Klebsiella sp. ZD414 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 1.044614723 1.033808338 1.041063916 0.989198275 0.966913921 0.921175009 0.902755971 0.943327526 1.037273535 1.020829382 0.973294675 0.962346525 0.944550074 0.903268785 0.923814197 0.883438818 1.062659568 1.0886644 134101899 terc Saccharopolyspora erythraea NRRL 2338 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.964331421 0.959107188 0.93476165 0.965511001 0.963998332 0.939774988 0.953427854 0.956536176 0.923982362 0.927109698 0.93115834 0.95362392 0.857972212 0.898986401 0.859283295 0.870917111 0.952896388 1.002431572 292655605 gdh Haloferax volcanii DS2 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 0.858881762 1.036333399 0.809562809 0.880283074 0.86318491 259021123 fthfs Rhodobacter sp. SW2 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 1.031739611 0.96551673 1.052172455 1.064493843 1.020690416 1.058553254 1.03334928 1.038992462 1.012752124 1.046798224 1.057052671 1.054699163 0.995598612 1.0007061 0.986507234 1.001772837 1.086084259 1.045441034 334130366 terc Methyloversatilis universalis FAM5 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 0.917853759 0.984799043 0.906840828 0.924886959 0.941387749 0.946823636 0.901006513 0.913259283 0.962237228 0.960473072 0.946573477 0.930487893 0.933348905 0.911671292 0.898797345 0.962363041 1.049294615 0.961815334 269305886 amyA Xylanimonas cellulosilytica DSM 15894 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 0.984549409 1.001956066 0.955532895 0.971624883 0.85479559 0.952496622 0.84420041 0.960682404 0.953321407 0.965370152 0.882839809 0.923929746 0.820237532 0.917288124 0.882051496 0.921689004 0.997112455 1.028700898 1580816 alpha_galactosidase_fungi Hypocrea jecorina Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 0.943283353 0.95619462 0.867196914 0.90715403 0.856137759 0.929407823 0.87594556 0.92663252 0.918153772 0.922258047 0.804693505 0.945219372 0.885728813 0.827298228 0.79050065 0.828965607 0.855416774 0.934034121 48527096 mcra uncultured Methanosaeta sp. Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta; 0.938952972 1.028701802 0.885372477 0.995490457 0.927619522 0.956747624 0.940510255 0.908725476 0.92789435 0.927810571 0.916901871 0.912017067 0.959285195 0.926874915 0.986031953 0.944256976 0.934231442 0.973955117 163811600 rd Dehalococcoides sp. VS Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 1.485870512 1.453644727 1.432866238 1.457182818 1.439958699 1.455269503 1.422936942 1.43835328 1.430189018 1.42469929 1.435245309 1.452508917 1.421936224 1.405483153 1.425776637 1.429402944 1.45481713 1.420765483 119717607 acetylglucosaminidase Nocardioides sp. JS614 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.111794344 1.136742704 1.156661947 1.138170933 1.14369345 1.137142785 1.124937682 1.108709599 1.114686785 1.113794789 1.152498036 1.117244852 1.147085316 1.120342619 1.132398774 1.121446239 1.137650471 1.123846551 256828632 phn Desulfomicrobium baculatum DSM 4028 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 0.86203319 1.03290333 0.819492764 0.924499337 0.867918787 0.922033687 0.966242478 0.881133326 0.919868607 0.888700485 0.959703303 0.843004841 0.885792831 0.969705855 302389123 CsoS1_CcmK Thermosediminibacter oceani DSM 16646 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 1.277448974 1.291688674 1.275739999 1.29004765 1.27362138 1.292098719 1.265468278 1.287936839 1.279100855 1.274047835 1.331323218 1.291042567 1.243853097 1.237454405 1.238317348 1.252486787 1.26656014 1.275329805 209522393 exaa(moxf) Burkholderia sp. H160 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.987757054 1.010982534 0.973922654 0.951467194 0.914455711 0.943276723 0.872731316 0.91809914 0.960398324 0.993460845 0.927074901 0.955386277 0.895900901 0.950229199 0.897860833 0.905016178 0.976402603 1.009393712 323471272 poba Arthrobacter phenanthrenivorans Sphe3 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.833518551 0.806435831 0.794765903 0.786466904 76803740 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.488792627 1.459013297 1.428053851 1.461742163 1.417437404 1.472774717 1.399132045 1.420330954 1.436359051 1.427668283 1.422716443 1.437915604 1.398783105 1.384805683 1.398723123 1.416632974 1.45026834 1.434897759 284388657 amyA unidentified Carbon Cycling Carbon degradation Starch 0.802476374 0.792276098 0.821813031 0.837696439 0.796806149 0.833076145 0.810088405 0.834426611 0.833751187 147886056 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.993476882 1.052183626 0.929129706 1.015836675 0.947670122 1.01398996 0.938554452 0.95396905 0.985440291 1.013533243 0.989377521 0.972883808 0.987476323 1.036309277 0.951059484 0.987078947 0.977445856 1.030584034 14023205 fthfs Mesorhizobium loti MAFF303099 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.997800318 0.896200773 0.886834802 0.91951889 0.800983438 0.763247218 341616214 ppx Citromicrobium sp. JLT1363 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium; 1.300982275 1.240763912 1.251945995 1.248888223 1.210501523 1.216837378 1.134180839 1.197305571 1.259144476 1.240133017 1.231175481 1.231622814 1.209337757 1.170868294 1.162268575 1.19579697 1.267185208 1.237138376 112462315 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.82790895 0.879163996 0.887089134 0.858922835 328843106 RgaE Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 1.000148944 0.984976059 0.991637193 0.988664384 0.999305672 0.998449049 1.018688298 1.007834854 1.010671104 0.996630865 0.987976367 0.977861944 0.986967647 0.935154633 0.926082868 0.929993255 1.014601075 0.988264774 118617205 amyA Mycobacterium ulcerans Agy99 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 0.882477401 0.888190631 0.844031953 0.891396214 0.895997121 0.967686699 0.900838433 0.886582273 0.893160703 0.890900561 0.913963169 0.906877103 0.883153631 0.855345738 0.850518456 0.871438235 0.928802207 0.881237406 29465996 norb uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.095437172 1.06631412 1.074968159 1.126884333 1.031255705 1.090652978 1.060503987 1.081327204 1.082629421 1.052086899 1.065475582 1.085357515 1.032029631 1.038398382 1.015927633 1.042552059 1.120704596 1.054241202 86360333 cmci Rhizobium etli CFN 42 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.828193379 0.840481777 0.795847138 0.868389487 0.82317777 0.828501703 0.800392916 0.825709205 0.802996965 0.808961166 0.813876452 0.856088846 0.88181415 23867886 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.919866893 0.93868184 0.932331611 0.929107545 0.879929245 0.95879119 0.917303456 0.883452696 0.928388344 0.940772566 0.852248651 0.922709495 0.880055967 0.853738193 0.824869348 0.899949463 0.901196911 0.945287848 84510149 GAPDH_Calvin Loktanella vestfoldensis SKA53 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 1.330281471 1.327580179 1.341007154 1.411896878 1.323682727 1.347522483 1.336107447 1.341957925 1.321175627 1.310120031 1.349437326 1.356422335 1.320591325 1.278307356 1.322607069 1.32252361 1.344383834 1.288036619 116740541 xyla Listeria welshimeri serovar 6b str. SLCC5334 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria welshimeri; 0.894138336 0.866004766 0.875166884 0.959677511 0.899952375 0.854720494 0.864706762 0.830269127 0.8563256 0.895083989 0.891469375 0.885482505 0.876293083 0.870995562 0.812544506 0.849388079 0.881156679 182634818 cysJ Beijerinckia indica subsp. indica ATCC 9039 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 1.022762314 0.992911812 1.019531471 1.033502943 0.970313873 0.977264404 0.987159265 0.990813205 1.020820474 1.003984885 0.948940856 1.02080732 0.961709516 0.933803862 0.938080151 0.943621214 0.998959202 0.984013455 15077499 dsrB Desulfoarculus baarsii Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus; 1.011725056 0.989775938 0.976994363 0.99672407 0.96599152 0.990571368 0.965819215 0.965930918 0.939732581 0.945172469 0.938762169 0.970937364 0.90071767 0.910787332 0.915374512 0.921045286 1.006975873 0.991281275 226347212 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.01400943 1.061199587 1.04310752 1.002552881 0.958452092 0.993004683 0.957982323 0.990711512 1.026668679 1.009663932 0.984159629 1.014426206 0.941556356 0.961708921 0.954507743 0.939626935 1.008929752 1.056486736 119695017 pcpb Mycobacterium sp. KMS Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.969318522 1.002755983 0.964628234 0.96317557 0.94341352 1.011499738 1.026377721 0.976071873 0.95457288 0.965995542 1.051655771 0.991202792 0.945619263 0.949402351 0.878753939 1.020087108 0.949432324 1.013562822 363641365 xylanase Tannerella sp. 6_1_58FAA_CT1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella; 0.944256109 0.964186892 0.966813603 0.911676053 0.921748377 0.946025284 0.911054521 0.911714284 0.963588106 0.962329679 0.94607563 0.963110885 0.894512699 0.935892103 0.895686347 0.909308977 0.957748119 1.012239718 167646139 chnb Caulobacter sp. K31 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 1.075744436 1.047687584 1.079809972 1.095152844 1.080237165 1.079897516 1.085273682 1.089885212 1.072415085 1.061607237 1.053545266 1.088063219 1.047957323 1.051878285 1.072675937 1.050070292 1.074515415 1.045066274 295096817 cda Enterobacter cloacae subsp. cloacae NCTC 9394 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 1.008899658 0.997239346 1.038335316 0.999063715 0.974171939 1.034936033 0.932258267 0.939473923 1.002236125 0.969098559 0.94897807 0.955116174 0.907743936 0.986336567 0.909362882 0.953320211 0.999116058 1.008385089 261283308 pme Paenibacillus sp. Y412MC10 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1.068582591 1.042557554 1.087417857 1.112306674 1.080007809 1.090682861 1.093416932 1.100979928 1.110559248 1.139244648 1.053233566 1.074878569 1.059751847 1.069191762 1.047622036 1.043358903 1.049691103 1.065893368 56962348 xyla Bacillus clausii KSM-K16 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 0.772534333 0.804961257 0.87665714 0.819123724 0.817699934 0.846181046 0.826898382 0.835845967 0.848632688 0.851796708 0.806931058 0.808202139 0.864014923 0.832304745 0.842961046 0.850713944 0.850533449 21219070 endoglucanase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.094630129 1.081603663 1.036950156 1.028179904 0.972218943 1.040474634 0.963940168 0.993200477 1.027578492 1.027904873 0.99868253 0.979795276 1.012220423 1.039168645 0.958917234 0.991411075 1.034732542 1.05577195 336300658 hyaluronidase Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation hyaluronic acid superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.140537079 1.129516884 1.097806771 1.086676718 1.082436764 1.140809281 1.084393291 1.090659951 1.072089398 1.089959732 1.162923786 1.118363375 1.04606051 1.113194375 1.059903353 1.071125439 1.066743355 1.103073476 51872731 chitinase uncultured organism Carbon Cycling Carbon degradation Chitin 0.871401204 0.782292847 0.83158573 0.874859876 0.823428654 0.850452376 0.892184988 0.794528067 0.847148606 0.813388532 0.853873876 0.879061391 0.825933025 0.837808011 178925573 narb uncultured bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.834974362 0.872771727 0.823129258 0.922248872 0.828686017 0.868337349 0.881813525 0.84443229 0.949897129 0.897461922 0.84852751 0.861906851 0.928297621 0.856555021 0.911104136 0.880959587 0.885303693 357018601 cdh Mycobacterium thermoresistibile ATCC 19527 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 0.940881572 0.935004252 0.913075989 0.926576592 0.911064812 0.899582324 0.885937792 0.899439063 0.915876109 0.934134876 0.882575333 0.874514819 0.874862235 0.87110438 0.830275785 0.869706272 0.921178113 0.945480564 227498100 acetylglucosaminidase Actinomyces urogenitalis DSM 15434 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 1.030290575 1.041033131 1.000005647 1.022131954 1.008483272 1.041909952 1.018164645 1.071328641 1.024879242 1.025887884 1.030210444 1.028393497 0.976350755 1.038688796 0.965302651 0.984720743 1.00106149 1.071814934 78102077 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.045491893 1.00268547 1.004776766 1.011388622 0.976606508 0.991974698 0.934032936 1.019656381 1.03050643 0.979030393 0.975269486 1.021498324 0.946531892 0.96447885 0.947794697 0.991948314 1.000994128 0.993870307 2588983 phdi Nocardioides sp. Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.035948617 1.009434086 0.990851641 1.026568336 0.996701136 0.961664849 0.93665814 1.000549486 1.005097382 0.998216993 0.978046312 0.96357982 0.957157154 0.941929762 0.972077037 0.997803914 0.985981682 381157962 GAPDH_Calvin Thiorhodovibrio sp. 970 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 0.897815633 0.907920534 0.81839534 0.86817804 0.908736856 0.870931063 0.93874236 0.891128846 0.880855318 0.858820618 0.852979825 0.864080802 0.851009063 0.780791045 0.817910926 0.865207292 320527927 amyA Solobacterium moorei F0204 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Solobacterium;species:Solobacterium moorei; 1.032905471 1.072358736 0.988824282 1.036557813 1.035589377 1.050703783 1.012223178 1.023289043 1.035769744 1.068817529 0.95491337 1.006917411 1.014214182 0.983709781 0.916418944 0.978362292 1.056329074 1.050124686 163261088 cysJ Bordetella petrii Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 1.289751218 1.298935671 1.294558628 1.281363563 1.278469392 1.303090825 1.281444954 1.284613015 1.262478369 1.254187102 1.282635553 1.28983575 1.268351703 1.245295353 1.252648245 1.264004302 1.305954823 1.262961871 256729338 pec_Cdeg Nectria haematococca mpVI 77-13-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 0.949202962 0.954631604 0.910577848 0.979422938 0.91628966 0.967990078 0.95072524 0.931207696 0.907067238 0.968629982 0.891236369 0.941937621 0.948648061 0.932186509 0.910756121 0.927758011 0.995693603 0.938081911 383644164 B_lactamase_A Sphingomonas elodea ATCC 31461 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 0.935476815 0.92829039 0.973329816 0.934146639 0.908654346 0.908415929 0.955525304 0.983141366 0.945104459 0.921224316 0.864540845 0.9305372 0.88137457 0.850465731 0.846033119 0.845695674 0.922885436 0.913758264 21217705 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.947154806 0.992262919 0.961515398 0.96372514 0.952222517 0.989941739 0.949109227 0.897252191 0.944453243 0.963182439 0.909353848 0.928864728 0.902978495 0.881545448 0.923140627 0.88464154 0.978068982 0.979128923 114542542 alkb Roseovarius sp. HTCC2601 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 1.369089935 1.331329191 1.320353301 1.349129539 1.288599496 1.333842173 1.279190202 1.301461636 1.320430933 1.309013645 1.324285255 1.33079843 1.28993674 1.284025841 1.288047271 1.304022109 1.330289024 1.31043945 71383742 nasa Synechococcus sp. WH 8008 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.800962877 0.794845027 0.844376384 0.825649751 0.811459571 0.847909489 268311625 pectinase (pectate_lyase) Thermomonospora curvata DSM 43183 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 0.886773162 0.871006072 0.874542299 0.903018946 0.855625781 0.876995877 0.836381672 0.885790366 0.881708019 0.819178169 0.809792198 0.845748206 0.829654566 0.891738198 0.850655559 0.882587386 0.864184989 0.898096006 192360166 mannanase Cellvibrio japonicus Ueda107 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 0.908749003 0.884220092 0.867963094 0.898752819 0.920150678 1.014698207 0.917948805 0.823090103 0.97686293 0.911288015 0.912931205 0.932441138 0.95125676 0.94576894 0.911154285 0.879014725 0.902865162 318040833 nira Synechococcus sp. CB0101 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.92075593 0.870753993 0.826706236 0.886285041 0.818834097 0.831935119 0.859155887 0.837323503 0.85926442 0.848461775 0.859054515 0.84338514 0.845318125 0.884740342 0.956901498 0.848671877 163261665 tktA Bordetella petrii Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 0.881464793 0.903878288 0.865623541 0.832561829 0.804296953 0.809343436 0.794108953 0.831179418 0.860726925 0.895648283 293326096 chitinase Shewanella violacea DSS12 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella violacea; 0.775372073 0.773781716 0.819369053 0.778271602 0.800178136 0.801399288 0.797213284 0.810451714 0.831083454 126347556 inulinase Streptomyces ambofaciens ATCC 23877 Carbon Cycling Carbon degradation Inulin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 1.079101331 1.104337431 1.111526419 1.093978492 1.120277979 1.092259714 1.135605536 1.085694063 1.081696471 1.095474675 1.114784283 1.114326343 1.066748076 1.067500836 1.055899095 1.070480498 1.16042108 1.15089826 381202148 B_lactamase_A Sphingobium yanoikuyae XLDN2-5 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 1.018753036 0.999298621 0.913741311 1.051684881 0.974490393 0.976798428 0.985627489 0.989347752 0.975884207 0.982826613 0.970331373 0.984236049 0.95317556 0.942950219 0.912158364 0.980728689 1.020644677 0.996512439 398210177 trza Pantoea sp. YR343 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.915456204 0.896890546 0.901838804 0.938927437 0.896067191 0.897223127 0.85840348 0.872306701 0.899486835 0.812526199 0.83819264 0.866072318 0.858978012 0.859913006 0.870919273 0.822315974 0.924364909 0.922395659 332592150 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria; 1.2516794 1.24449088 1.217042455 1.264798581 1.229069119 1.207484576 1.243223269 1.246933249 1.258572366 1.233186769 1.218477567 1.247362624 1.227231691 1.189122578 1.15420066 1.230939354 1.212101698 1.233023798 319438400 ppx Dietzia cinnamea P4 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 1.2669052 1.202216134 1.191332921 1.252139217 1.237403242 1.201321037 1.213142307 1.226731282 1.221225443 1.192435157 1.174589613 1.231282834 1.210831983 1.176940447 1.184043094 1.189895696 1.223827642 1.197018454 2117031 rgl Aspergillus niger Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.787747976 0.816224416 0.781373105 0.804241658 0.848552286 0.782628966 0.808182478 0.810508353 0.805165193 0.790905702 0.83021059 374987753 linb Streptomyces bingchenggensis BCW-1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.097957285 1.063847731 1.048803695 1.041743535 1.034049439 1.054726311 1.017248487 1.006683949 1.026025907 1.025666481 0.982779734 0.969715369 0.973354959 0.988515816 0.978003986 0.967056729 1.067359133 1.068933381 124258969 vana Methylibium petroleiphilum PM1 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.960938312 0.973862423 0.93778279 0.973544441 0.949931568 0.95000696 0.948222159 0.96736541 0.975365761 0.948108031 0.918049248 0.986111986 0.94778674 0.944831082 0.925949692 0.901327907 0.915688147 0.999414475 311113754 nirb Rothia dentocariosa ATCC 17931 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia dentocariosa; 0.86457402 0.84252737 0.891389628 0.880447315 0.888234965 0.892682567 0.922634048 0.866455336 0.874986635 0.81768086 0.848755874 0.810877792 0.831897446 0.812695616 0.884602962 0.936670854 150014764 rubisco uncultured alpha proteobacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.326914753 1.29215021 1.310066688 1.307138287 1.300925102 1.30475277 1.299128068 1.306572212 1.288181286 1.273244509 1.291809534 1.28905435 1.279799272 1.244701697 1.26920211 1.265502067 1.298975098 1.248142956 335999449 codh Treponema azotonutricium ZAS-9 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 0.912988903 0.87650312 0.967947352 0.887576187 0.920740537 0.93827767 0.872199813 0.941779851 0.940087812 0.894515314 0.957014999 0.936105385 0.88768284 0.881904005 0.869136304 0.946278802 0.900339744 0.930720011 359732604 ppx Rhodococcus pyridinivorans AK37 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 1.237415935 1.215963106 1.24651363 1.171278672 1.234218282 1.238335306 1.161373802 1.168008485 1.202631539 1.181391403 1.200695112 1.199931307 1.213497356 1.182157938 1.207177318 1.203429273 1.233705215 1.194021412 149809645 SoxV Roseobacter sp. AzwK-3b Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.995131951 1.038483414 1.03424441 1.075058775 1.009046674 1.064767282 1.003692562 1.026115464 1.048348553 0.995305792 0.975710348 1.024261901 0.994139053 0.9850972 1.00832457 1.006212709 0.995848551 1.014636991 224823588 arsc Pseudogulbenkiania ferrooxidans 2002 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania;species:Pseudogulbenkiania ferrooxidans; 0.767551988 0.805495669 0.765457909 0.821709505 299793296 pcag Amycolatopsis mediterranei U32 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 1.102433594 1.12518173 1.038763985 1.044725334 1.049723159 1.094580273 1.034511639 1.031239635 1.065193736 1.076144612 1.078820194 1.057121476 0.989722188 1.058730873 0.984833262 1.00256595 1.05348175 1.100487601 46308014 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.827145076 0.850886763 0.878143379 0.854124676 0.810146725 0.814780884 0.860064051 0.890307432 117927811 endochitinase Acidothermus cellulolyticus 11B Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 0.941911844 0.87604286 0.859599957 0.811315147 0.865600448 0.9595057 0.869916134 0.810185959 0.868944457 0.849325744 0.880204621 0.818526705 0.818907771 0.977769588 0.817274524 0.941386865 0.908653006 83645847 chitinase Hahella chejuensis KCTC 2396 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 1.07930348 0.881994626 0.952362699 0.87666889 0.866427426 0.830447802 0.888233509 0.916884718 0.950126987 0.895462292 0.996555591 0.861211323 0.811888912 0.843307368 0.82834776 0.899125786 0.835717277 0.895442072 149232839 terc Pedobacter sp. BAL39 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 0.788804041 0.800905535 0.822318597 0.860450487 0.78933423 0.955654441 226346720 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.229347275 1.243630429 1.197634444 1.211128677 1.196025724 1.204012039 1.18746255 1.22034429 1.194780862 1.19831298 1.187416291 1.209565623 1.186825363 1.182064964 1.18616031 1.191316348 1.214099318 1.190433319 66876307 hcab Rhodococcus sp. TFB Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.9949969 0.972306712 0.996009774 0.981960527 0.960805932 0.988757381 0.950980809 0.976105186 0.978730483 0.964190419 0.956782263 0.970918572 0.970700295 0.995606745 0.948173729 0.985337356 0.985219653 0.962755164 377529356 mer Gordonia sputi NBRC 100414 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.981353158 0.980138271 0.950451078 0.969431168 0.948182762 0.948057098 0.910363589 0.915267945 0.963949061 0.95489514 0.915241775 0.890313797 0.913106875 0.951593913 0.878208247 0.919273887 0.966081591 1.009134524 163667975 acetylglucosaminidase Chloroflexus aurantiacus J-10-fl Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 0.887842679 0.94417023 0.97510317 0.922293936 0.976536422 0.95248897 0.982379487 0.940863795 0.937851919 0.973020515 0.935323226 0.909639846 0.912884386 0.84818601 0.850527663 0.90397177 0.913022182 0.904727631 118567780 dsrB Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Ruthia magnifica; 0.771793112 0.834843948 0.826378897 0.887227103 0.904196185 0.85054683 0.864108168 0.895932887 0.793437535 0.874600633 0.841021038 0.8257207 0.847862193 0.811735427 0.866383528 0.851808244 297157576 chitinase Streptomyces bingchenggensis BCW-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 1.22675765 1.194938629 1.198141409 1.173782759 1.197991682 1.229533364 1.207726882 1.204429577 1.192528577 1.184820817 1.198727385 1.191651433 1.212848925 1.154226005 1.165765543 1.146157321 1.20888173 1.169797725 326196899 cutinase Gordonia neofelifaecis NRRL B-59395 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 0.924029128 0.892871853 0.933108354 0.92286886 0.882953605 0.862112129 0.930086644 0.925222354 0.881703187 0.832816041 0.875108156 0.788256922 0.905035194 0.863965605 0.893839205 0.91661492 224520161 pme Bacteroides cellulosilyticus DSM 14838 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 0.981116343 0.996490617 0.971514036 1.084325938 0.987874077 0.992559503 1.142752452 1.036550975 1.029874235 0.962840317 1.037290656 1.015663551 0.995392382 0.942401457 0.999374809 0.978301187 0.987185485 0.944682774 336117569 vgb Microlunatus phosphovorus NM-1 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 1.004546933 1.022544037 0.993282641 1.044337891 0.945029281 0.942249767 0.949729393 0.971553641 1.004661522 0.939516292 0.968762456 0.996480665 0.951493205 0.935359502 0.922935795 0.9638122 1.031684389 0.966794943 162072864 dsrB Halochromatium salexigens Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Halochromatium; 1.030000114 1.009365473 1.04254874 1.047236044 1.027072057 1.023291859 1.02753241 1.032988863 1.033105998 1.0209396 0.990605713 1.048267374 1.046604677 0.981288332 0.998461408 1.019940891 1.079720454 1.038783638 398043222 catb Burkholderia sp. BT03 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.820953314 0.865596119 0.821329671 0.830258174 0.869048368 0.817071231 0.873145218 0.818459255 0.882717165 0.858675112 0.826273174 0.858472356 0.848802543 0.881417496 153887146 ophc Ralstonia pickettii 12D Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.776503736 0.816062307 0.859782424 0.844384483 0.814635962 0.879450632 0.830048237 0.849121307 0.848425971 2765433 vdh Pseudomonas putida Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1.109687437 1.094921574 1.084999016 1.072824546 1.071518972 1.092928252 1.080257083 1.069088472 1.066288445 1.077875621 1.044314719 1.066280689 1.028207275 1.018033959 1.012304408 1.021541265 1.089736056 1.091359728 302673144 endochitinase Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.946575819 0.951199261 0.943346853 0.949858283 0.854085554 0.9496808 0.914572585 0.928107535 0.93417882 0.930694202 0.901218181 0.920878385 0.869424902 0.875603645 0.79537005 0.869655509 0.951054283 0.916332086 50954857 gdh Leifsonia xyli subsp. xyli str. CTCB07 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 1.814151911 1.79447605 1.795503595 1.721048438 1.773754248 1.838135585 1.781270638 1.773860322 1.738930193 1.76370904 1.78269087 1.730285592 1.747564655 1.745296736 1.790027945 1.780604202 1.762914939 1.771915788 302383233 mdlc Brevundimonas subvibrioides ATCC 15264 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 0.933451624 0.90591057 0.896521596 0.936881577 0.913937657 0.901363593 0.907482094 0.936539097 0.902953824 0.91405856 0.917498232 0.930758468 0.892412286 0.891855487 0.879479752 0.88811164 0.924900488 0.924793422 326440094 alginase Streptomyces clavuligerus ATCC 27064 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 0.867064095 0.854919388 0.878723453 0.858657619 0.910948877 0.837991206 0.868846673 0.848604001 0.896532285 0.829546099 0.838215165 0.860706196 0.948165617 0.871813336 0.873344617 0.88278886 0.901455041 0.876604414 404435069 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.927341729 0.919112721 0.918554851 0.909783252 0.932330987 0.920818278 0.90891101 0.909945889 0.913064285 0.893143789 0.921222519 0.885600323 0.821142125 0.844778643 0.863253011 0.820835788 0.915134317 0.929560173 237880003 nagg Burkholderia glumae BGR1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 0.963079559 0.925672487 0.949018861 0.960919942 0.97607555 0.946948228 0.976850473 0.959438316 0.93645833 0.933785594 0.903665397 0.949240204 0.90889366 0.890306257 0.891631237 0.876158844 0.921498354 0.95836821 77378451 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.148020589 1.156040411 1.137567502 1.138085948 1.113101486 1.14352132 1.086267544 1.11315605 1.082294556 1.096970481 1.085591893 1.142188092 1.106088776 1.049185056 1.082610275 1.116061632 1.144122887 1.11953301 116626210 amyA Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 0.85373186 0.826502596 0.85710711 0.797010344 0.889335721 0.85691047 281401445 amyA Prevotella oris F0302 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 0.811456349 0.808522517 0.831480637 0.858538232 0.852380663 0.826363533 0.800719361 31620970 nifh Paenibacillus durus Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.9149925 0.859049134 0.89240931 0.903502567 0.943098523 0.935239729 0.943191516 0.953101724 0.940347435 0.905519402 0.924734364 0.983332874 0.876438877 0.806616412 0.827158249 0.902312197 0.919602745 0.886920888 300390303 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria; 0.947886718 0.951285126 0.917547928 0.969512083 0.871818242 0.899353919 0.901276176 0.953625762 0.964883681 0.945618968 0.90005427 0.959135188 0.860844272 0.897717792 0.876530447 0.918184765 0.953856093 0.989061216 291439842 ara Streptomyces ghanaensis ATCC 14672 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 1.010179334 0.9842579 0.956633131 0.976468505 0.968412661 0.973186682 0.949993286 0.936957382 0.960868945 0.905531316 0.952943711 0.95810633 0.926764175 0.905166656 0.905275267 0.912534505 0.99373783 0.970410768 150956671 arsc Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 0.820154066 0.958302128 0.819923595 0.888941641 0.819790915 0.835141605 0.80783989 0.903722106 1.028616987 0.906438312 0.975052439 0.964823895 374620533 vgb gamma proteobacterium HIMB55 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.029331791 0.98230221 1.002490521 0.992777877 1.072068776 1.054895625 0.997475941 0.999092048 0.983576014 0.992977578 1.118097518 1.081077733 0.992893378 1.000945279 1.002261039 0.989034351 1.060531671 0.978092796 284447990 nitrate_reductase uncultured eukaryote Nitrogen N Assimilation NA superkingdom:Eukaryota; 0.966829114 0.943002247 0.97262809 0.987406293 0.951618111 0.943595021 0.947429608 0.894132101 0.953739071 0.915006768 0.930272186 0.929770202 0.90925629 0.901888176 0.881017139 0.909922427 0.969754392 0.955195252 339624330 fthfs Fructobacillus fructosus KCTC 3544 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Fructobacillus;species:Fructobacillus fructosus; 0.833762865 0.876861839 0.856701197 0.871908464 0.867777061 0.840306367 0.843379607 0.872293124 0.855061409 0.827216834 0.875837623 0.833775096 0.8361535 0.812521936 0.862491311 0.871606414 334102099 ppx Sphingobium chlorophenolicum L-1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 0.81484681 0.806531257 0.811590212 0.836165567 0.810242182 0.783066827 0.801046498 0.83120486 0.846078092 0.815119747 0.799686418 0.84469785 0.800671848 0.855109631 0.878019772 253575649 tehb Paenibacillus sp. oral taxon 786 str. D14 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 1.108902861 1.094296125 1.137438951 1.127477144 1.175798713 1.164325406 1.178650664 1.143229683 1.1339101 1.145783441 1.240017533 1.163133558 1.132321908 1.112190829 1.180925753 1.11459144 1.128794094 1.122216345 386848613 amyA Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.993842786 0.961576051 0.991478532 0.975614676 0.985881545 1.003563092 0.978435821 0.984559728 0.979073251 0.986390897 0.983043428 0.98928925 0.933043709 0.965522159 0.928291531 0.939159755 0.971372206 0.967710647 124260874 chnb Methylibium petroleiphilum PM1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 0.8160903 0.820516507 0.833613456 0.832790428 0.866207438 0.826761509 0.79143308 0.797393702 0.837593779 220931089 amyA Halothermothrix orenii H 168 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 0.849871322 0.799984665 0.826365507 0.924715331 0.839595111 0.852678463 0.863978433 0.883050968 0.979428097 0.8451358 0.871955788 0.885728813 0.876497764 0.851181235 0.863037842 377820672 acetylglucosaminidase Burkholderia sp. YI23 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.345123533 1.296273243 1.320881055 1.322367283 1.27727256 1.295994609 1.249027241 1.296180995 1.306532446 1.305050683 1.305056762 1.321324687 1.282391067 1.274608567 1.255412225 1.279311632 1.324691224 1.288111069 398252598 bphd Pseudomonas sp. GM84 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.866911625 0.881104524 0.876977109 0.884792659 0.889938572 0.803396926 0.82487982 0.877011398 0.876752003 0.820690594 0.807490558 0.899712206 0.868785946 365858548 pcpe Acetobacteraceae bacterium AT-5844 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 0.886568338 0.854734672 0.895571709 0.9196061 0.886536701 0.920648689 0.914911616 0.91719224 0.932774954 0.914549397 0.899171374 0.896348752 0.886839671 0.829596159 0.832289465 0.814491894 0.911680777 0.853305463 56680518 pcag Silicibacter pomeroyi DSS-3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 1.223039447 1.152200256 1.111927327 1.149368877 1.115034683 1.218313203 1.148094898 1.105507348 1.108435621 1.138701541 1.213600782 1.1198695 1.144234232 1.122120948 1.106781118 1.137533225 1.149191686 1.139718102 121553538 PRI Verminephrobacter eiseniae EF01-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.967181955 0.990647671 0.955807116 0.984964475 0.931992052 1.064183153 0.910338603 0.956810951 0.959336361 0.936607311 0.93919407 0.940634345 0.893607642 0.914841691 0.831892715 0.903657629 0.985234774 0.993976386 336406486 amyA Bacteroides sp. 1_1_30 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 1.030389444 1.035034323 0.988756793 1.023466334 1.01029845 1.029429064 0.961332135 1.016407484 0.981524034 0.997359067 0.974904897 0.995795127 1.007754335 0.975699564 0.92784074 1.027657379 1.025048502 1.043246283 254475804 GAPDH_Calvin Ruegeria sp. R11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.976111166 0.979278565 0.940280381 0.974711051 0.93883353 0.977517593 0.92520698 0.920695206 0.961245883 0.986432197 0.951181815 0.986625133 0.886599663 0.93072031 0.870822805 0.899732637 0.968460284 0.984171346 374367149 vana Cupriavidus basilensis OR16 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 0.987782337 1.038932404 0.985407861 1.031600393 1.005448648 1.019579794 1.028773225 1.033188063 1.028610358 1.001274096 0.972139315 1.005116072 1.010314365 0.935445853 0.966677066 0.934046146 1.029559685 0.972002382 374374277 RgaE Niabella soli DSM 19437 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 1.10034743 1.019246056 1.045731421 1.017969098 1.007474619 1.013692703 1.006721308 0.977112271 1.066832019 1.067355913 1.017809564 1.044980466 1.006831859 1.01817163 0.981236727 1.034211221 0.981599537 1.059674874 60326784 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.905031075 0.913111137 1.006169817 0.978459354 0.966930999 0.926476562 0.893792812 0.909986293 0.949784316 0.902770008 1.112557544 0.945860092 0.905716194 0.906628305 0.885945572 0.878502468 0.917898571 0.963051544 77966700 pcpe Burkholderia sp. 383 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.088447163 1.142438919 1.099382807 1.074290548 1.085168571 1.134681979 1.094072768 1.086803762 1.059230426 1.140351391 1.072118523 1.111763897 1.084308304 1.064598185 1.051586334 1.103441083 1.071308891 1.112086355 377531517 bend Gordonia terrae NBRC 100016 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 0.939346418 0.938621475 0.854763729 0.922365757 0.837497944 0.947595503 0.877322322 0.821898302 0.862605991 0.822769501 0.887264969 0.841245947 0.848318102 0.853637478 0.943493172 0.883359249 214030141 pgk Ruegeria sp. R11 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.781511713 0.798949487 0.893032684 73537968 tfth Ralstonia eutropha JMP134 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1.181625273 1.238217376 1.186886399 1.152265515 1.171251747 1.236178572 1.139706802 1.157727838 1.1535447 1.183164925 1.180418111 1.160365532 1.154402369 1.19075941 1.126940545 1.144854831 1.170987985 1.20506396 83634171 nosz Hahella chejuensis KCTC 2396 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 0.853020257 0.85972946 0.864048731 0.867238771 0.823452043 0.845569132 0.852632884 0.867612253 0.822673011 0.877779422 0.861709482 209521039 pcpe Burkholderia sp. H160 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.131067017 1.136014548 1.124488253 1.09517407 1.147246639 1.179164913 1.112174951 1.096516985 1.068900777 1.122825878 1.137987396 1.139614299 1.128271577 1.130324139 1.110174218 1.157293519 1.087747952 1.156261749 118738719 ophc Dinoroseobacter shibae DFL 12 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.821958423 0.825463825 0.868681616 0.873023563 0.885555159 0.859532366 0.893869696 0.856867304 0.827075937 0.892570088 0.96079966 0.85862891 0.835290469 0.824927154 0.78978686 0.816082344 0.835239875 390613788 badh Mycobacterium chubuense NBB4 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 1.139504019 1.208591957 1.1321949 1.12988112 1.13512532 1.123515429 1.126801344 1.135821755 1.1405838 1.139723367 1.123604178 1.147622197 1.091531297 1.083505546 1.086831555 1.124929332 1.116796304 1.131249149 164606904 phdi Arthrobacter phenanthrenovorans Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.945198195 0.90743183 1.016031652 0.979121881 0.959731995 0.961188582 0.934015554 0.930056572 0.981199617 0.929659786 0.88926445 0.904952562 0.914468473 0.845979179 0.863298667 0.859072166 0.948282046 0.924414709 458468 chitinase Janthinobacterium lividum Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 0.816060579 0.843709233 0.855050915 0.874934022 0.889435233 0.880755799 359361889 terc Achromobacter arsenitoxydans SY8 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 0.908371073 0.879781529 0.866416878 0.873205506 0.805964819 0.829883407 0.831712085 0.856234123 0.823281954 0.83056637 0.841570163 0.931672043 0.911367787 29125958 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.200605182 1.22480622 1.149264317 1.160663313 1.171012322 1.219992522 1.155995704 1.206391232 1.185465337 1.193615494 1.151372843 1.158417154 1.16617287 1.186185648 1.136950316 1.183975844 1.190590043 1.21975122 308048821 amyA Ferrimonas balearica DSM 9799 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 0.774237865 0.792124415 0.77398619 0.851252476 110283122 arsc Mesorhizobium sp. BNC1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 1.120235328 1.069413875 1.020389313 1.104793414 1.037989313 1.083572295 1.065524 1.0846556 1.091930804 1.063719845 1.040517005 1.072944256 1.029641537 1.046376693 1.018863969 1.044142221 1.116809141 1.065249625 120404477 endoglucanase Mycobacterium vanbaalenii PYR-1 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.148684092 1.113104549 1.122409494 1.121296195 1.213032081 1.146080608 1.134547757 1.172693485 1.095093309 1.127231641 1.04511876 1.114520285 1.127959815 1.064128632 1.098234684 1.089610289 1.09559044 1.152210331 385151758 arsc Hoeflea sp. CH14 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea; 0.82704729 0.821293782 0.838398964 0.825579257 0.82942317 0.820957672 0.859150675 0.821935125 0.81308643 0.833267377 0.888274972 258546008 norb Cardiobacterium hominis ATCC 15826 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 0.946813025 0.908218722 0.88917227 0.942487157 0.904404391 0.963402712 0.922129346 0.958090378 0.914942559 0.953601652 0.881762902 0.925707179 0.891893791 0.878254577 0.896057264 0.930978423 0.961814479 0.89808945 301109693 pectin_lyase_Oomycetes Phytophthora infestans T30-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 0.971373997 1.002986992 0.971426199 0.96703239 0.992472044 0.990486161 0.975576407 0.940048806 0.971052898 1.007924384 0.977258576 0.967972106 0.937316659 0.960805752 0.923114495 0.959624902 0.957775742 1.005769102 255957255 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.963047435 0.939685966 0.93471667 0.948651239 0.94591744 0.940829045 0.955675205 0.960692968 0.93416776 0.950507114 0.97669126 0.930535465 0.883082118 0.883297739 0.849910073 0.915466764 0.938647644 0.953379038 389938083 one_ring_12diox Burkholderia terrae BS001 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.770014954 0.804626509 260652439 endoglucanase Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 0.9484363 1.020608052 0.963114882 0.955479162 0.953054616 0.965849029 0.92485788 0.911813745 0.93112105 0.899057709 0.912454695 0.931417677 0.954555594 0.947917736 0.866430207 0.940949673 0.970201382 0.955420458 296122944 amyA Planctomyces limnophilus DSM 3776 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 0.950800557 0.906950725 0.880286496 0.921620774 0.872127862 0.88556271 0.873179754 0.888127105 0.917190144 0.928696341 0.923840027 0.903077709 0.864557579 0.828307348 0.912424768 0.893563324 0.94254317 0.916112086 74053703 one_ring_23diox Arthrobacter sp. 3YC3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.257763793 1.23396325 1.212028407 1.224662318 1.2278941 1.25735295 1.221278793 1.227820206 1.213171025 1.191999709 1.221320914 1.213384258 1.206530845 1.184252998 1.193146521 1.207978338 1.23901234 1.23471666 238021853 nfsa_2 Kingella oralis ATCC 51147 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella oralis; 0.965503877 0.917589707 0.894902614 0.93471447 0.883430235 0.906820368 0.888511102 0.939104159 0.914023796 0.907077202 0.887640519 0.922704395 0.841275198 0.864275661 0.834945606 0.869095932 0.923719041 0.926608273 353192814 cutinase Mycobacterium rhodesiae JS60 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.251101347 1.202022769 1.200220059 1.252673537 1.217172615 1.231932423 1.213890429 1.248144367 1.225993104 1.206283645 1.203753662 1.245030487 1.20007126 1.201806875 1.207292067 1.229649807 1.222011535 1.170121648 385867144 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.810841678 0.881763543 0.829588181 0.860571303 0.871987766 0.878493527 0.853959897 0.858518573 0.84350765 0.876401206 0.834009333 0.827205039 0.839841542 0.892907791 0.831931092 0.887637502 0.841240213 0.897819958 145555695 GAPDH_Calvin Rhodobacter sphaeroides ATCC 17025 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.077535759 1.069737502 1.066012293 1.070274954 1.019282558 1.033199798 0.994767961 1.013688054 1.05778645 1.039315999 1.070589245 1.068532551 1.016485241 1.034585568 0.974821476 1.018473676 1.051393388 1.045362121 162072836 dsrB Thiocapsa roseopersicina Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 0.820977978 0.854685753 0.877496634 0.844517899 0.900274143 0.83998352 0.797022202 0.887327412 0.812428053 0.855290203 0.837494724 0.810280999 0.873045396 0.896784448 0.897151445 148657307 mcr Roseiflexus sp. RS-1 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 0.866330357 0.940361139 0.868302485 0.92832986 0.857993551 0.885588759 0.87582108 0.888218755 0.903169651 0.89828391 0.852023118 0.859963426 0.819315997 0.845608627 0.80710827 0.885894341 0.948446678 46519947 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.883797449 0.839046313 0.927159251 0.893083287 0.87804729 0.867173153 0.855281598 0.862812923 0.917875135 0.850014865 0.876968198 0.887704569 0.811884553 0.824736517 0.958237821 0.837149466 0.898270471 0.903074659 312879074 chitinase Aminomonas paucivorans DSM 12260 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 0.948660761 0.922215857 0.920723975 0.987433964 0.918165886 0.902481149 0.903536703 0.943978616 0.941990021 0.907108689 0.900814464 0.93892948 0.868976526 0.898661267 0.88160787 0.879336666 0.912145664 0.913578597 357025168 b_lactamase Mesorhizobium amorphae CCNWGS0123 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 1.059022032 1.092327738 1.111904815 1.223340841 1.133359001 1.150992317 1.125417248 1.075213846 1.057101499 1.125525152 1.091378759 1.086030724 1.103008481 1.100383933 1.092650536 1.17196505 1.100368675 1.149403676 148511181 nagg Pseudomonas putida F1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.13270411 1.131062332 1.10904867 1.130209943 1.11793604 1.127653978 1.100960063 1.138591958 1.130617158 1.06368092 1.114254316 1.119377869 1.099613599 1.069298067 1.080837857 1.087758611 1.158620135 1.092953419 333391484 fthfs Centipeda periodontii DSM 2778 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 1.130069643 1.122864755 1.074653564 1.119518002 1.124853923 1.139367825 1.14364502 1.131879279 1.108711928 1.098319581 1.107285589 1.099361472 1.103412072 1.070130506 1.069782526 1.060332938 1.123887066 1.107166027 13488100 phn Mesorhizobium loti MAFF303099 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 0.976789579 0.9283227 0.91274344 0.959353004 0.924178254 0.925315065 0.898762513 0.928441015 0.958443795 0.933914636 0.921722943 0.915355418 0.90450946 0.919898928 0.896357975 0.932617006 0.958831807 0.924251943 389796736 xyla Rhodanobacter sp. 116-2 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 1.270444241 1.279093059 1.259096593 1.255340588 1.243079468 1.302709609 1.253670892 1.249920179 1.250318356 1.254568998 1.257220416 1.246990626 1.252470643 1.224482467 1.207056777 1.209415167 1.298321647 1.257464466 317405870 cpnc Achromobacter xylosoxidans C54 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 1.117692111 1.06554327 1.075129257 1.146479821 1.106594092 1.063417892 1.081251557 1.106521759 1.097306951 1.057165287 1.071975441 1.105180359 1.076699566 1.047568212 1.074129139 1.034975508 1.119034974 1.079081321 148474782 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 1.012946659 0.900498427 0.86681616 0.778556262 0.813186687 0.816818477 0.914834242 0.973463814 0.81956469 0.817340435 0.825156071 0.880810945 0.936685743 94417716 ppx Pseudomonas aeruginosa PA7 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.854585909 0.919424263 0.864497566 0.832451507 0.906328186 1.015940189 0.884993528 0.850429021 0.860912073 0.889820424 1.102745638 0.893313332 0.860584782 0.905009663 0.924984978 0.904909147 0.900679447 0.849057192 77378616 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.939926051 0.965517902 1.056735706 0.962213481 0.947038177 1.061978507 0.933359893 1.0038001 1.016665319 0.92383791 0.910185144 0.913280651 0.899990382 0.930390902 0.859176937 1.018515759 1.034064515 0.971706502 323471415 nahf Arthrobacter phenanthrenivorans Sphe3 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.834624508 0.878229201 0.861530782 0.89961182 0.88315563 0.861389733 0.914449224 0.901883052 0.825731875 0.841230206 0.900808101 0.839697185 0.809102341 0.799369208 0.826826153 0.79165875 0.884195351 0.880697586 94311115 ppx Ralstonia metallidurans CH34 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 1.046772965 1.103801921 1.043580787 1.024767753 1.05166077 1.06568179 0.998407219 1.02012822 1.033257089 1.039826276 1.026882053 1.063048955 0.996689961 1.02390268 1.030030779 1.016094713 1.035111634 1.064291346 207744735 endoglucanase Ralstonia solanacearum IPO1609 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 0.855798119 0.864129009 0.865916865 0.857440365 0.831992716 0.885072505 0.81762063 0.829094038 0.817174944 0.835921067 0.833251691 0.846575779 0.867220696 0.898086306 0.875336195 0.908070968 126460278 alkk Pyrobaculum calidifontis JCM 11548 Organic Remediation Others NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 0.845291075 0.861498668 0.857134354 0.870485703 0.834602003 0.826811313 0.879924829 0.891387675 400232184 xylg Burkholderia multivorans ATCC BAA-247 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 0.888165383 0.88091623 0.899232491 0.901572858 0.822979201 0.84004323 0.898176129 0.863131617 0.84006817 0.848394132 0.842756654 0.851946405 0.841914437 0.871707505 0.877987778 76058263 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.905807552 0.869249753 0.965452066 0.895776955 0.974362163 0.959747138 0.958055874 0.947875297 0.918765387 0.988900873 0.929871607 0.956396295 0.938542104 0.906308521 0.86836642 0.934211345 0.9098717 0.889809269 238884297 catb Selenomonas flueggei ATCC 43531 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 0.857938082 0.860583226 0.880157798 0.857644363 0.847266165 0.848552124 0.857792282 0.821704011 0.799882533 0.831826292 0.84973331 0.819415176 0.855916983 0.819644647 38490083 xlnd Silicibacter pomeroyi Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 1.065447258 1.055380442 1.068971452 1.037812687 0.998291915 1.008914346 0.96198211 0.978134658 1.034299017 1.021136248 1.042675347 0.990113438 1.08149879 0.988603004 0.951907294 0.994694349 1.03999464 1.014123636 293615019 urec Coraliomargarita akajimensis DSM 45221 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 1.064297432 1.00435811 1.021986517 1.070844225 1.028381024 0.998385139 1.030760685 1.052276022 1.072685896 1.004343365 0.992262221 1.030673768 0.984182484 0.970400056 0.939469006 0.983687497 1.041887528 0.978701491 89043168 tktA Oceanicola granulosus HTCC2516 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 0.921724779 0.971665515 0.85599122 0.996795448 0.951768054 0.941415533 0.897371114 0.892296175 0.959445467 0.918783982 0.950416387 0.974316666 0.917601744 0.858422575 0.836405379 0.868752512 0.979520382 0.924319679 145225492 scnabc Mycobacterium gilvum PYR-GCK Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.05668248 1.0717261 1.026049856 1.065379204 1.029596379 1.069274634 1.031345082 1.04879529 1.031069935 1.041618644 1.020435231 1.039874333 1.005357074 1.010681609 0.990755475 1.03537749 1.063988898 1.065614881 327545677 mer Oxalobacteraceae bacterium IMCC9480 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 0.847630671 0.886503797 0.844801398 0.886494593 0.856969836 0.865291021 0.858509089 0.84539631 0.838619835 0.82838465 0.863057278 0.874205885 0.836367907 0.820986658 0.837960611 0.862137716 0.850668278 0.847638156 296255413 urec Methylosinus trichosporium OB3b Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 0.973292633 1.014096114 0.95976592 0.959013537 0.953698147 0.968836626 0.945991589 0.935219777 0.963812617 0.953491826 0.949075928 0.974946669 0.942880302 0.922384693 0.913012607 0.960928285 0.994797077 0.985139571 85825378 urec Roseobacter sp. MED193 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.19206571 1.202713523 1.154390991 1.170178328 1.174215999 1.185280051 1.156812425 1.145668145 1.164728208 1.174013845 1.177998483 1.189088386 1.138386747 1.125243264 1.134619911 1.171888537 1.171431199 1.173948128 196478323 arsc Phenylobacterium zucineum HLK1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 1.05256567 1.022128868 1.070759425 1.078658821 1.005809896 1.076731642 1.001009447 1.050277389 1.049034977 1.032037437 1.048050353 1.027644307 0.999962508 1.035160668 1.007357339 1.023255547 1.068262343 1.073458732 226939965 urec Laribacter hongkongensis HLHK9 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 0.801010313 0.82317252 0.814000606 0.835511293 119898813 proO Azoarcus sp. BH72 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 1.094660911 1.068014639 1.052211997 1.075106157 1.038560805 1.075721854 1.053979132 1.088057134 1.084321767 1.037558528 1.046556639 1.079651066 1.005312593 1.026913563 0.993913135 1.033180864 1.088535664 1.053410494 238709575 B_lactamase_A Yersinia rohdei ATCC 43380 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 0.824340179 0.840281499 0.844542519 0.875223561 0.81102084 0.845142409 0.823554071 0.873102305 0.810930331 0.842880447 0.84690116 0.858132029 0.855010816 169760229 atzb Pseudomonas putida W619 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.280209298 1.297079377 1.290084572 1.291623576 1.292417113 1.367674345 1.271246333 1.266776395 1.275662068 1.25087302 1.229711395 1.242818785 1.269760418 1.267157877 1.279829873 1.262906283 1.289411308 1.312466086 306517205 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.014151682 1.010770349 1.002692546 0.992571386 0.935764243 0.98946789 0.912753651 0.945120015 1.008831403 0.998443951 0.955462176 0.95567614 0.921590834 0.948507876 0.970594966 0.938829226 0.99974326 1.028149224 340777834 PRI Acetobacter aceti NBRC 14818 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 1.044233717 1.024602816 1.041639449 1.017955656 1.041366743 1.082751555 1.034843375 1.00253663 1.012270605 1.058652356 1.023915349 1.005478897 0.996266517 1.032830978 1.02780612 0.989620678 1.038936899 1.070480953 171192961 PRI Polynucleobacter necessarius subsp. necessarius STIR1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 0.929780347 0.892477625 0.86960059 0.899989128 0.910786237 0.927053552 0.845248321 0.908318614 0.890482903 0.864380911 0.889233577 0.84825327 0.837293655 0.84042155 0.839365002 0.898893303 0.90198409 329119813 narg Neisseria bacilliformis ATCC BAA-1200 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 1.045990133 1.016968869 0.998640416 1.061030553 1.009466452 1.07847601 1.01652142 1.018796664 1.022023566 1.022488367 0.96454117 1.007550051 0.987532266 0.973812264 0.98700222 1.053168835 1.024701913 1.010512461 358449275 xylg Marinobacter manganoxydans MnI7-9 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 1.047746272 0.985842296 0.953225927 1.000281496 1.02543418 0.983579952 0.985882425 1.007411918 1.01628947 1.005760493 1.000505669 1.023332097 0.936231352 0.954297698 0.914069705 0.944694401 0.977907159 0.98207043 142054 nifh uncultured marine bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.778792343 0.805596622 157911575 FBP_aldolase Dinoroseobacter shibae DFL 12 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 0.818651698 0.915205877 0.909237879 0.847396624 0.897703319 0.864659882 0.866237968 0.876929332 0.903339172 0.866055237 0.845046545 0.860977812 0.840382788 0.899999759 0.91186844 253574730 ara Paenibacillus sp. oral taxon 786 str. D14 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 1.000136022 0.92434376 0.999647647 1.033080099 0.975840985 0.984009437 0.977275245 1.012963268 1.035855815 0.978848229 0.984915722 0.988108991 0.96382282 0.909208604 0.968492311 0.937894198 1.027035053 0.982247382 148829422 arsc Erythrobacter sp. SD-21 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 1.065530624 1.017009999 1.047595425 1.051076219 1.072980507 1.105142874 1.074813988 1.059860938 1.038370721 1.08312541 1.003014773 1.016370923 1.039607796 1.009460611 0.956515791 1.011376311 1.059085038 1.068417183 338821454 amyA Agrobacterium tumefaciens F2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 0.871127401 0.837753537 0.855735962 0.860861741 0.880765748 0.888044639 0.898858009 0.864728809 0.852058636 0.840228156 0.796222494 0.818915153 91683424 FBPase Rhodopseudomonas palustris BisB5 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.805986423 0.818463742 0.80912843 0.82119104 0.815055217 0.829782773 0.831792235 0.799098206 0.833163484 0.809842375 0.823739362 0.845685217 0.841380865 301119087 rgl Phytophthora infestans T30-4 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 0.887187438 0.827724154 0.895624455 0.884539953 0.884087819 0.862728259 0.860358809 0.864804328 0.882210172 0.864020069 0.834616457 0.885821598 0.822654714 0.873220282 359818446 cutinase Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.187657083 1.172737726 1.144418019 1.131765857 1.145310125 1.197840397 1.135092965 1.166972969 1.115571943 1.164547856 1.141887025 1.144563749 1.14838764 1.136246007 1.140381334 1.174031493 1.19437516 1.156947019 291556981 amyA Eubacterium siraeum V10Sc8a Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 0.893948391 0.871021748 0.901377908 0.912081767 0.851453496 0.877607337 0.883912552 0.879171059 0.925347848 0.894498216 0.875928641 0.932366836 0.860859377 0.833548807 0.858530798 0.858132459 0.89372135 0.898754462 113875120 phn Sinorhizobium medicae WSM419 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 0.86158164 0.868897432 0.808717962 0.858931978 0.890637402 0.861418005 0.839755165 0.83775845 0.85169858 0.896706161 0.842692833 0.863216802 0.832519915 0.837473019 0.815612877 0.827810782 0.874442431 0.897698433 303276773 mg_chelatase Micromonas pusilla CCMP1545 Secondary metabolism Pigments Chlorophyll superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 0.810031077 0.824552858 0.852874442 0.817176556 0.801556005 0.847236112 0.805688491 0.780634766 0.817506675 0.832556143 0.790888344 62086133 bco Blastochloris sulfoviridis Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Blastochloris; 1.159378211 1.142152336 1.146847898 1.153703866 1.118927559 1.172186847 1.109334896 1.097523148 1.128369919 1.126866901 1.10947793 1.136781806 1.107612729 1.116723485 1.144450736 1.144108184 1.171169289 1.116259038 390411342 amyA Terriglobus roseus DSM 18391 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 0.932198454 0.903337157 0.888829376 0.913534033 0.910027589 0.887941573 0.911607885 0.888267715 0.888065585 0.912822006 0.898601642 0.90053579 0.888825119 0.837336659 0.819171597 0.882291405 0.910593178 0.916912638 225874281 amyA Acidobacterium capsulatum ATCC 51196 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 0.935394867 0.934434642 0.903044417 0.97372773 0.925018194 0.929988683 0.912217575 0.942097732 0.911019562 0.88183266 0.901739195 0.933507271 0.89922677 0.915366586 0.931915606 0.902822779 0.973718428 0.933748714 222543126 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 1.028475206 0.988557455 0.986838769 1.003106081 0.961231856 0.971854437 0.959253648 1.007168084 1.010355973 0.981257995 0.951811727 0.980782968 0.948471671 0.945311923 0.977412518 0.907549804 1.01448027 0.962638251 377575732 narg Mobilicoccus pelagius NBRC 104925 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 0.840069195 0.83789611 0.855164807 0.84165424 0.878206972 0.902623767 0.832304688 0.803954893 0.792454871 0.925110423 0.815659472 0.873789662 0.867283886 0.902731044 0.891402732 0.891663046 0.870971505 0.880410061 402759785 b_lactamase Acinetobacter sp. NCTC 7422 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.837546834 0.81448133 0.818493103 0.84177683 0.7926451 0.861053346 0.822888894 0.833572027 0.83996246 0.82674454 317018182 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.835077391 0.822063095 0.819559478 0.895771127 0.784920872 0.830542936 0.831954559 0.864624198 0.87194064 0.766270276 0.813732773 372269454 arylest Marinobacterium stanieri S30 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 0.935161577 0.867154022 0.8645896 0.896369761 0.824535109 0.833216 0.845648825 0.848654732 0.888458832 0.87973359 0.87698691 0.862894591 0.910931819 0.865229929 0.866552941 0.915953996 0.863702376 212537097 phospholipase_D_fungi Penicillium marneffei ATCC 18224 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 0.830384176 0.860541626 0.799234839 0.829058553 0.812578157 0.828503319 0.884727339 0.792370112 0.895806705 0.803552174 0.865151713 385670374 atzb Streptomyces tsukubaensis NRRL18488 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 1.013061353 0.955456641 1.029653497 0.995146002 0.998419277 1.052725813 0.990812344 1.006207138 0.985046909 1.062197862 0.97150591 0.967127834 0.955237683 0.978877285 0.946112751 0.950557687 0.969216178 1.025031037 300659138 TIM Agrobacterium tumefaciens Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 1.064878919 1.069987891 0.98591307 1.022829662 0.986537064 1.020508703 0.999986426 0.952896057 1.035712436 1.034651974 0.956685478 0.990017958 0.947498286 0.978375002 0.927457471 0.987531927 1.057415254 1.066076747 153998677 mcra Candidatus Methanoregula boonei 6A8 Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanoregula;species:Methanoregula boonei; 0.786997522 0.831404186 0.841137267 0.780572668 0.783906311 0.807660553 350275738 fumarase_DiC4HB Thermoproteus tenax Kra 1 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 1.116815894 1.116400638 1.121663189 1.096650841 1.167525979 1.152898209 1.15922238 1.062603253 1.092381376 1.143663123 1.166317478 1.141218994 1.136164586 1.166979184 1.152479962 1.157080673 1.087835582 1.141025782 298290968 fccab Starkeya novella DSM 506 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 1.067412396 1.109669491 1.036659782 1.018852606 0.992504262 0.9856431 0.964548678 1.004299697 1.003635555 0.979752809 0.975565245 0.981735629 0.988544467 0.944118159 0.946508051 0.94258229 1.048493051 0.989764766 194337338 dsrB Pelodictyon phaeoclathratiforme BU-1 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 0.88635475 0.803840915 0.910602448 0.887370768 0.864974758 0.803833337 0.874821076 0.921230568 0.861944148 0.865436071 0.847800852 0.813849523 0.85764329 0.913445475 0.854130586 339883727 terc Actinomyces sp. oral taxon 448 str. F0400 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 0.828924745 0.848704168 0.845059129 0.803340527 0.81545925 0.799351677 0.842621322 0.783530642 0.819321502 0.813834533 0.834326339 0.837072156 0.872807324 373890839 RgaE Mucilaginibacter paludis DSM 18603 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 0.988067605 0.985127904 0.861356671 0.905346073 0.919538091 0.956298766 0.93532623 0.871096492 0.965538645 0.961687414 0.85516895 0.873462768 0.980945581 0.973130819 0.840947386 0.958135319 0.95096968 0.973604908 46392670 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 1.105712325 1.091424225 1.076315451 1.121923493 1.071705118 1.098066131 1.070437865 1.126780264 1.09449452 1.058777065 1.066598695 1.104892656 1.065965766 1.074901863 1.119105085 1.069537199 1.113967091 1.09420443 167574798 endoglucanase Burkholderia oklahomensis C6786 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 0.94981867 1.013240855 0.94118487 0.963226016 1.001120197 1.001506707 0.974461738 0.973702938 0.986290188 0.994746333 0.979821867 0.986477333 0.962466584 0.964908823 0.99077843 0.975862101 0.97518718 1.006101704 225791775 ara Acidobacterium capsulatum ATCC 51196 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 0.847723749 0.857226425 0.860948848 0.869330524 0.888979802 0.89601662 0.902476067 0.89087611 0.860300414 0.859307001 0.836927485 0.853763325 0.843790878 0.790145781 0.837948743 0.866341894 0.896885814 335359239 nifh Thermodesulfatator indicus DSM 15286 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfatator;species:Thermodesulfatator indicus; 0.807471799 0.811371559 0.858425638 0.867187866 0.885154117 0.832530761 0.842132339 0.876331515 0.830982539 0.854553809 0.837890913 0.858328924 0.8530678 0.787768429 0.830977335 402258484 proO Sphingomonas sp. LH128 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.118312117 0.837787567 4512252 mnp Pleurotus ostreatus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 0.946225563 0.881104475 0.918754912 0.932375233 0.885095675 0.935808 0.916781045 0.891427591 0.918139874 0.916875623 0.898695437 0.897538272 0.881939607 0.919616057 0.865981187 0.891911329 0.939795205 0.920511852 345872300 pgk Thiorhodococcus drewsii AZ1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 0.876524084 0.818865582 224017473 arsc Bacteroides coprophilus DSM 18228 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 0.832547411 0.824622391 0.799125722 0.857881321 336296520 chitinase Paenibacillus mucilaginosus KNP414 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 0.798786152 0.821894262 145556223 exaa(moxf) Rhodobacter sphaeroides ATCC 17025 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.000409649 0.970834653 0.995628998 1.052390195 0.990651109 1.025467905 1.048198892 1.030269376 1.020556982 0.964594168 0.994539806 1.035588279 0.966111349 0.975722161 0.957577079 1.005601835 1.041510475 0.956800892 9658291 amyA Vibrio cholerae O1 biovar eltor str. N16961 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 1.054981248 0.989835015 1.0063933 1.058153019 0.961319268 0.995379826 1.02770993 1.03159768 1.037036061 1.005144512 0.985985257 1.020950142 0.98006384 0.977846701 0.963668662 1.001951193 1.028462294 1.010831742 377820591 tktA Burkholderia sp. YI23 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.826337603 0.831915889 0.831038903 0.837073415 0.894017624 0.844707469 0.840390007 0.819171035 0.835130301 0.861489843 0.869183383 0.886198737 0.800579312 0.825538128 0.795527107 0.791604381 0.848111692 0.878272431 2935031 catb Rhodococcus opacus Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1.04859369 1.028340812 0.996999466 1.018431764 1.027734502 0.996481104 0.958057199 0.956292532 1.010391476 0.994781234 0.965621455 0.999225884 0.979275047 0.942782963 0.940063148 0.9427135 1.051816947 1.03794603 91703634 arsc Mycobacterium sp. MCS Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.240284357 1.250117047 1.240213963 1.196725967 1.231352013 1.2799788 1.23038265 1.237343459 1.201012591 1.203202997 1.218860427 1.200811624 1.221071983 1.194092847 1.186612458 1.193943113 1.245190999 1.232460639 2826168 nagg Pseudomonas putida Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.875726587 0.834270167 0.857343924 0.899098138 0.827443585 0.808469022 0.8394621 0.872742099 0.880889036 0.891903453 0.822425555 0.863361795 0.894782381 0.89602124 330828578 Sir Aeromonas veronii B565 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 0.895344198 0.882948704 0.885229266 0.820833924 0.881001931 0.849164768 0.833702305 0.856668931 0.854841919 0.825489203 0.88097222 0.836656607 0.904388179 0.919775987 116743200 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.97276236 1.029057208 0.962034173 1.053680353 1.016267945 1.04398156 0.975009976 0.979177888 1.026586661 1.032214496 0.98114153 0.978184359 1.012449793 1.043116299 0.940750482 0.997519978 1.019965237 1.032334381 315659481 ppk Staphylococcus lugdunensis M23590 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus lugdunensis; 0.94116486 0.901045672 0.944632139 0.97346024 0.933940228 0.930260603 0.880228635 0.905418614 0.948903909 0.858455916 0.890413838 0.927038525 0.921581265 0.832722642 0.845681406 0.897233656 0.950209097 0.933038022 407804543 xylj Alcanivorax sp. W11-5 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 0.861193542 0.876321871 0.847323681 0.799442485 0.818469203 0.804647008 0.798123369 0.803151947 0.826857165 0.841125155 0.848979391 0.852255651 260223593 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.976298461 0.897431388 0.911126927 0.965987905 0.929733013 0.978466624 0.956988564 0.958360697 0.886979546 0.934016175 0.947831759 0.948512399 0.957347235 218892208 cysI Pseudomonas aeruginosa LESB58 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 0.75713583 0.805160816 0.828134184 0.791971263 0.792398512 0.80202625 0.830129227 0.74222065 0.814058072 295647331 phytase uncultured microorganism Phosphorus Phytic acid hydrolysis NA 1.035155293 1.048477204 1.048101395 1.046234934 1.027959001 1.054253969 1.036809612 1.050527149 1.025398594 1.046859717 1.055697653 1.051998773 0.996042875 0.9932796 0.973254166 0.982885014 1.032165348 1.083955105 25900718 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria; 0.803007731 0.837160411 0.81088799 0.882867217 0.816837785 0.865875379 407276442 chnb Rhodococcus sp. P14 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.841043459 0.855958649 0.802453729 0.859906573 0.809678032 0.844679874 0.795424596 0.893991228 359400790 phdci Novosphingobium pentaromativorans US6-1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 0.800013443 0.82021755 0.822203109 0.85012092 0.816471868 0.843404222 0.82325709 0.822240103 0.803318045 0.815028853 359424438 narg Gordonia amarae NBRC 15530 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 0.753116382 0.944136027 0.78091067 0.790572346 0.805421139 0.784058095 0.79100047 0.82930488 0.93484255 0.805152003 0.798160182 0.859400198 254041090 arsc Hirschia baltica ATCC 49814 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 0.91128718 0.801695697 0.825436798 0.864445226 0.889835814 0.86645829 0.821418168 223982792 amyA Holdemania filiformis DSM 12042 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 1.186754074 1.187454527 1.165564655 1.202231531 1.14773725 1.190291162 1.153685757 1.144503096 1.160340188 1.166510807 1.173499996 1.200488592 1.157465598 1.171284525 1.139365511 1.163850102 1.188785521 1.160102653 109648488 bphF1 Desulfitobacterium hafniense DCB-2 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 0.840740082 0.850929597 0.825458409 0.888655621 0.880227345 0.845623383 0.868610082 0.843755781 0.864030792 0.88089158 0.882117851 0.843600001 0.832312563 0.843787119 0.885473033 377532780 amyA Gordonia terrae NBRC 100016 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 1.003172771 1.003785771 0.91744849 0.979573398 0.88197935 0.972768418 0.868858903 0.900248406 0.945275365 0.948018907 0.914213687 0.904618419 0.896460532 0.928921206 0.850321852 0.901593085 0.979173043 1.018475848 186470462 cysJ Burkholderia phymatum STM815 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.903831102 0.966031009 0.919485661 0.929477956 0.922039371 0.914082695 0.895336659 0.875840943 0.854175131 0.882281984 0.892211708 0.91378228 0.902644762 0.901240842 0.874080691 0.902359276 0.912526978 0.950510879 116804546 nasa uncultured prokaryote Nitrogen Assimilatory N reduction NA 0.933857144 0.934043164 0.942744796 0.979882238 0.930145455 0.969523132 0.964344724 0.937834652 0.921256137 0.946856898 0.922038126 0.956163909 0.884041768 0.85921051 0.859784581 0.877871191 0.945679678 0.958545171 363407673 amyA Tannerella forsythia ATCC 43037 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella;species:Tannerella forsythia; 0.948779982 0.989951434 0.888860269 0.965852943 0.929504467 0.976366177 0.886398573 0.929369237 0.943302002 0.936616068 0.88436791 0.935355957 0.949695296 0.945764391 0.908399962 0.90037392 0.959107157 1.005355905 381397747 terc Microbacterium laevaniformans OR221 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 1.133683739 1.089717758 1.156559074 1.16657464 1.147398917 1.148381391 1.168119224 1.153675316 1.114207538 1.112746769 1.142952055 1.144133067 1.075027971 1.082003802 1.108232758 1.084109191 1.213568691 1.09961018 385179133 limeh Burkholderia sp. Ch1-1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.975158293 0.883890737 0.926844231 0.963151578 0.915426068 0.946535162 0.940146113 0.918583078 0.955630122 0.92544964 0.923385953 0.932312487 0.940131137 0.872339831 0.845703811 0.887583057 0.961486251 0.914340389 325168807 tktA Agrobacterium sp. H13-3 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 0.973781696 0.929400381 0.95877245 0.99569198 0.941839437 0.947475425 0.987272255 0.978109554 0.985628688 0.984817286 0.974243355 0.991894264 0.920477146 0.889094911 0.934944615 0.895666294 1.028149152 0.978145633 115519091 exaa(moxf) Rhodopseudomonas palustris BisA53 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.858841554 0.880967288 0.814150633 0.885454003 0.850922204 0.790162613 0.888155933 0.861868042 0.858864576 0.80685297 0.876025673 0.818294651 0.805774367 0.838912626 0.89237092 222138075 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.78058932 0.808895914 0.829796705 0.763478501 0.813388473 0.79456527 0.756097987 0.830837464 116743267 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.989330097 0.963417327 0.954947399 0.968430536 0.950090039 0.948935569 0.90350947 0.949761956 0.954164621 0.921608467 0.893261565 0.903611134 0.931135932 0.866645632 0.900390575 0.895972849 0.95887796 0.970919831 73698632 cellobiase Alicyclobacillus acidocaldarius Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 0.84849506 0.876724832 0.878671716 0.804756974 0.812520396 0.879836623 0.825288386 0.786735925 0.813844015 0.855796724 0.897223351 373850727 rgl Opitutaceae bacterium TAV5 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.062244289 1.039592515 1.026577205 1.066822306 1.048210394 1.091786472 1.045100268 1.057507038 1.05053198 1.064522662 1.017309927 1.048100701 1.043103119 1.049359338 1.034977055 1.062000625 1.079924779 1.04823998 296139486 terc Tsukamurella paurometabola DSM 20162 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 0.945446461 0.943863543 0.972660334 0.933983829 0.937470167 0.971092351 0.899642916 0.908899946 0.944261138 0.919919884 0.910599908 0.968752249 0.880673884 0.866864082 0.84295663 0.880074274 0.947243071 0.960222508 381379908 ppk Rubrivivax gelatinosus IL144 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax gelatinosus; 1.134334974 1.11418087 1.078816232 1.07544009 1.084647445 1.103137458 1.062160131 1.072710128 1.101446125 1.105739573 1.103113154 1.104099152 1.083606155 1.077239296 1.054043366 1.069507222 1.118093224 1.127026388 383821536 amyA Mycobacterium phlei RIVM601174 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 1.239333845 1.240220875 1.196810808 1.175204821 1.158931129 1.23259088 1.140874593 1.141733646 1.115998291 1.180122504 1.15377489 1.153417932 1.15750428 1.163327723 1.153939685 1.170573977 1.200810035 1.202280552 219852472 dsra Candidatus Methanosphaerula palustris E1-9c Sulfur sulfite reduction NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 0.842295367 0.918568941 0.862722005 0.893997799 0.922325956 0.893979053 0.860496148 0.89160543 0.837715024 0.924546921 0.850200102 0.897137056 0.874889867 0.857796094 0.858955072 0.836619818 0.905678775 345633048 mer Streptomyces zinciresistens K42 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 1.174122696 1.142733997 1.147012831 1.149800127 1.157717019 1.132541097 1.129711253 1.154872963 1.146953798 1.143363996 1.134656825 1.139165252 1.130709577 1.099356272 1.110810084 1.113465832 1.175853722 1.154321082 145575973 alkb Pseudomonas mendocina ymp Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 0.837324428 0.812558643 0.800688611 0.852452212 0.875939847 0.826584716 334887626 pcag Salinisphaera shabanensis E1L3A Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 0.939315847 1.008673137 0.929226881 0.988339202 0.950640805 0.965111924 0.894049333 0.872493985 0.895132723 0.895831253 0.884874004 0.907473328 0.947630916 0.874342797 0.853791147 0.91228871 0.924933255 1.000184475 45386161 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.305173963 1.255205713 1.259513405 1.300409338 1.239587962 1.269485521 1.237998875 1.260762783 1.2788464 1.257331544 1.260342427 1.276962828 1.246713587 1.237603774 1.232826313 1.238742144 1.286863518 1.230878498 317508584 amyA Segniliparus rugosus ATCC BAA-974 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 0.973900657 0.989333701 0.936148097 0.991507963 0.988873358 0.957418072 0.918854402 0.981145751 0.973511089 0.923887404 0.898945173 0.94154061 0.914929578 0.914392063 0.924628383 0.878238418 0.970397809 1.029293794 116610594 pcpe Arthrobacter sp. FB24 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 0.796105831 0.854571624 0.811449926 0.90529606 53756342 nifh Methylococcus capsulatus str. Bath Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 0.851519456 0.880587069 0.903347399 0.869023993 0.877600228 0.894670681 0.905801882 0.869303295 0.863065047 0.886215988 0.884252206 0.842819914 0.833166097 0.849424717 0.868806013 0.857271023 164456140 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.842674846 0.796633829 0.827685994 0.898230762 0.813143145 0.788666714 0.877004626 0.873279 0.843887837 0.84906704 91687557 cysJ Burkholderia xenovorans LB400 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 0.787979657 0.824416975 2911478 amyA Paenibacillus macerans Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.941288825 0.912118038 0.874265321 1.009168532 0.86559214 0.922219893 0.901551089 0.912837077 0.94544817 0.943695782 0.858887178 0.912754614 0.905835199 0.888984988 0.866996551 0.877580173 0.952672825 0.896484867 164455616 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.895561741 0.831936527 0.86601625 0.889477727 0.884445885 0.824052243 0.888925434 0.90907129 0.901732538 0.852080484 0.857906541 0.901609553 0.877299848 0.80871859 0.846445454 0.807420341 0.874713848 0.886107817 374324792 mannanase Paenibacillus terrae HPL-003 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 0.880006943 0.885529719 0.908013304 0.899142782 0.949858224 0.920504002 0.885170862 0.886429632 0.862796815 0.922630692 0.901585959 0.900384435 0.874250662 0.852092158 0.847460478 0.826963616 0.893260859 0.920156335 291544870 RgaE Ruminococcus sp. 18P13 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 0.825579718 0.851125145 0.934883032 0.889967484 0.892911517 0.867418568 0.857102843 0.87671265 0.882175548 0.877871725 0.878774943 0.87157579 0.848142764 0.83059998 0.80216734 0.832277234 0.88523484 80975793 alkb Nocardia sp. H17-1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 0.951298698 0.954109518 0.976637414 1.010063136 0.996529996 0.980181726 0.978914245 0.981432424 0.972326597 1.044235974 1.011658225 1.047410317 0.981807058 0.994088082 1.034962664 0.962181805 0.961513201 0.964710152 217330181 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.053560472 1.030411728 1.074391166 1.056338502 1.025525054 1.043837156 1.031869119 1.062771747 1.047035446 1.002531903 1.038639293 1.036932059 1.024169437 0.967576258 0.978036266 0.957375174 1.041981578 1.016290087 260650933 pme Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.012835417 0.952244708 1.012093769 0.987134674 0.995452933 0.990769619 0.99078838 1.175930964 1.023942411 0.96595437 0.938109986 0.992388722 0.945776383 0.903545179 0.905432366 0.922915236 0.988422389 1.011830444 228015257 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.091306125 1.051237969 1.056721928 1.068492707 1.092876053 1.08864861 1.08410988 1.061814394 1.042443866 1.076063211 1.026952917 1.057548741 1.019011019 1.029591334 1.005612325 1.004567809 1.058544613 1.090419844 89087213 amyA Bacillus sp. NRRL B-14911 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 0.872204676 0.829192924 0.876140071 0.917416969 0.833585231 0.931225436 0.819910912 0.841196793 0.878633782 0.873487356 0.863872831 0.86472908 0.855627795 0.850954477 0.901268418 0.890068475 78521708 nosz Alkalilimnicola ehrlichei MLHE-1 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 0.799874117 0.787495591 323139061 FBPase Methylocystis sp. ATCC 49242 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 1.028388965 1.079291768 1.050358109 1.057576675 1.061952666 1.054136451 1.04032164 1.005067075 0.990566815 1.045454136 1.027355018 1.03497584 1.040187076 1.001110442 1.011709709 1.035596876 1.026942224 1.043979992 386856890 amyA Deinococcus gobiensis I-0 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 1.164341305 1.212362194 1.17260208 1.150811548 1.177011126 1.221944665 1.147162422 1.129625606 1.140952529 1.205852198 1.183019313 1.155665141 1.161719277 1.208784119 1.167280932 1.174493866 1.17157306 1.186081763 145302229 cellobiase Salinispora tropica CNB-440 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 0.813339778 0.797424146 0.850280892 0.823448023 0.859697852 0.849509239 375143592 tfdb Niastella koreensis GR20-10 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 0.98674042 0.953802067 0.971518966 0.960633953 0.927887214 0.956700728 0.927991572 0.967990281 0.969484896 0.97332987 0.923137754 0.935105098 0.885351352 0.950349104 0.845215977 0.918267316 0.97113287 1.00213276 374326666 PEP_synthase Pyrobaculum sp. 1860 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 1.046165801 1.028830401 1.057461296 0.99169991 1.014705778 0.951822855 0.996714283 0.977604656 1.016304092 1.048677142 1.02597951 0.990857036 1.011104666 1.018062486 0.981139627 0.958973134 1.026268417 1.076120823 111150767 camdcab Frankia alni ACN14a Carbon Cycling Carbon degradation Camphor superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 1.464387856 1.364960856 1.391543214 1.449285438 1.375322911 1.440805584 1.400364767 1.422902161 1.398477927 1.358518758 1.386854555 1.383632901 1.356198367 1.331948788 1.346798828 1.390749908 1.411295387 1.351137882 63029764 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.94900775 0.96333492 0.948157334 1.042076482 0.993806117 1.032480471 0.985996227 0.976292015 0.988462434 0.988675879 0.955336732 1.014796389 0.932590573 0.905242684 0.836231584 0.942417174 0.96176413 0.948587178 162568509 aoxb Pseudomonas sp. 1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.960916568 0.95875165 0.966870004 0.987881317 0.967879623 0.953871059 0.92967879 0.971367913 0.991692071 0.975897056 0.95229355 0.980906219 0.952954045 0.960758551 0.977744369 0.923463873 1.018008168 1.015294087 27349176 tfth Bradyrhizobium japonicum USDA 110 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 0.945128265 0.932818953 0.883477246 0.927127673 0.831203564 0.886516006 0.859415923 0.886822893 0.925067551 0.888709142 0.843871152 0.88448416 0.833836189 0.864472237 0.828061263 0.878900915 0.923393402 0.934848066 89347083 dehh109 Rhodoferax ferrireducens DSM 15236 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 0.815565261 0.803326965 0.803764833 0.878766537 121712204 exoglucanase Aspergillus clavatus NRRL 1 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 0.985390438 0.936120991 0.907671438 0.925949952 0.90987497 0.9338764 0.90989407 0.949944812 0.925337099 0.921648347 0.905690262 0.934741461 0.849376961 0.912892208 0.875895233 0.93099016 0.972119868 332377154 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria; 0.980839034 0.924627533 0.977700885 1.015837 0.960750921 0.91645936 0.975271718 0.985625515 1.006125043 0.93170366 0.928679739 0.977976174 0.932886095 0.854109088 0.901734025 0.920050143 0.997004865 0.906067337 189198385 phospholipase_A2_fungi Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.877305009 0.808852279 0.816605432 0.860306643 0.814517337 0.817830733 0.84065071 0.840939841 0.84002288 0.808061335 0.846323125 0.876900964 0.837172219 153012124 tktA Ochrobactrum anthropi ATCC 49188 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 0.807712582 0.814796753 0.856507274 0.822462724 0.844679188 0.830968752 0.803890745 0.849296941 0.813903862 0.847669874 0.818886575 302675262 xylanase Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 0.994534401 0.930489578 0.816697406 0.803184502 0.844554304 0.81158207 0.838902499 0.825236631 0.875878633 0.884327607 0.900001187 0.809579413 0.898647609 0.93391407 0.889012762 383774473 mdla Bradyrhizobium sp. S23321 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.796968549 0.826778997 0.780414394 0.888488352 23492715 arsc Corynebacterium efficiens YS-314 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 1.144270879 1.169010104 1.143616551 1.151126339 1.111669644 1.148324844 1.123799452 1.112871959 1.106383517 1.117148659 1.1142116 1.127540033 1.079125365 1.096312081 1.067719291 1.079315585 1.145519207 1.140629115 260652184 amyA Streptomyces scabiei 87.22 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 1.169283222 1.07398294 1.160977675 1.122812273 1.097165425 1.067747334 0.971037325 1.059013006 1.119650577 1.10129965 1.118545742 1.086549746 1.092006258 1.086066759 1.019902892 1.065969635 1.155977034 1.117204113 116619464 ccmL Candidatus Solibacter usitatus Ellin6076 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.034131699 1.048753944 1.027028768 1.077299032 1.024542924 1.076504947 0.987867035 1.040113289 1.064844221 1.059914119 0.985387465 1.060390965 1.01584306 0.99274264 1.000766879 1.021594789 1.0761152 1.043618119 85709358 ppx Erythrobacter sp. NAP1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 0.916688855 0.887707384 0.949785707 0.887935537 0.903710648 0.963990885 0.839999479 0.875697915 0.915811244 0.925630374 0.877325869 0.880776336 0.783377757 0.83674039 0.781504824 0.935393613 0.899982961 0.890047564 300309645 tktA Herbaspirillum seropedicae SmR1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 0.798904813 0.840496588 0.800795391 0.909976999 0.801105052 0.824599827 0.817917667 288960200 tktA Azospirillum sp. B510 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 1.16274141 1.128503999 1.100677511 1.143029567 1.070184573 1.135770339 1.076339721 1.103933831 1.12449493 1.096065808 1.098327264 1.113911845 1.06467021 1.106016366 1.02126058 1.071404313 1.14616205 1.104682133 199594029 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.844280441 0.810517016 0.860881134 0.894922034 0.856794011 0.843509975 0.890539622 0.874428005 0.845526513 0.882754391 0.862190872 0.88046132 0.827586978 0.815955257 0.81772944 0.837031198 0.886843856 0.876368504 352682225 alkk Thermoproteus tenax Kra 1 Organic Remediation Others NA superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 1.246832408 1.211471194 1.144776915 1.192111453 1.144984935 1.21249312 1.141677175 1.17240501 1.185011297 1.174238366 1.149927238 1.165975769 1.147226964 1.155965997 1.128440326 1.189523364 1.209660949 1.208118573 354724639 ppx Enterobacter mori LMG 25706 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter mori; 1.118979331 1.112675468 1.10195819 1.099220818 1.111528663 1.141643461 1.127370597 1.109985521 1.069217624 1.078755966 1.095928111 1.074384751 1.082259647 1.067813152 1.018901954 1.100617691 1.09412185 1.134849602 50542706 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.979596912 0.955397861 0.970571065 0.902549324 0.993297957 1.061974833 1.015242427 0.921310001 0.944736208 1.069182558 1.097686676 0.976891484 1.060090506 1.041302741 1.083587803 1.038992254 1.052136307 1.039332494 13195098 dsrB Desulfotomaculum acetoxidans Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 0.938576902 0.887621395 0.877232533 0.949377346 0.86496696 0.831167831 0.908469955 0.896538369 0.987810002 0.899929826 0.903546471 0.961074235 0.825387704 0.835939252 0.88167514 0.899636577 0.882441423 13249537 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.846564212 0.831294661 0.900387441 0.901051939 0.822469381 0.830739414 0.882202248 0.8097175 0.827511912 0.831326653 0.878985419 0.816177534 115257183 xylanase Rhizobium leguminosarum bv. viciae 3841 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 1.203406841 1.198131307 1.165009124 1.160404925 1.184594516 1.186273442 1.17485719 1.155040275 1.155757481 1.167696305 1.242988709 1.189984146 1.157940471 1.149907058 1.188469683 1.164396208 1.214868114 1.16863729 216824 nifh Leptolyngbya boryana Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Leptolyngbya; 0.999322615 1.036066709 0.985486046 0.989404064 1.070734031 1.060317537 1.054158976 1.00652304 1.017039071 1.050017723 1.077892207 1.040060999 1.058370728 1.048449262 1.052215897 1.024367823 0.98104698 1.018775528 392402274 amyA Turneriella parva DSM 21527 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Turneriella;species:Turneriella parva; 0.985739647 1.026883587 1.022247497 1.008314684 0.985471215 1.023802523 0.950983664 0.98639793 0.968216574 1.013902121 0.983799755 0.962541932 0.983623911 0.965445871 0.938158086 0.969166389 0.986939304 0.959255759 94471125 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.98223706 0.920565344 0.933187951 0.964240017 0.946314722 0.965154081 0.962552066 0.981557377 0.964639529 0.945338591 0.946005405 0.955427244 0.920264568 0.862869089 0.864542428 0.899166412 0.96502837 299123728 amyA Halalkalicoccus jeotgali B3 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halalkalicoccus;species:Halalkalicoccus jeotgali; 0.862380687 0.861591408 0.834010673 0.828765454 0.787142953 0.833951894 0.816795353 0.833644779 0.809145421 0.850187655 0.814639016 383830329 acetylglucosaminidase Saccharomonospora xinjiangensis XJ-54 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 1.27416285 1.253083854 1.209328803 1.258118418 1.196257413 1.231789276 1.215459653 1.251672841 1.212871963 1.233105373 1.18329258 1.244555082 1.208094276 1.174128728 1.167901653 1.192993997 1.258196602 1.257753776 365896511 b_lactamase Bradyrhizobium sp. STM 3843 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.002414471 0.985887154 0.918719516 0.957244992 0.944562999 0.949800829 0.936250652 0.92539895 0.996068662 0.948037323 0.933016688 0.942695059 0.941156329 0.953438831 0.919767882 0.938784902 0.993851225 0.919714988 118424479 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.128447883 1.065389473 1.061428878 1.107548119 1.042513375 1.086938366 1.050456827 1.10124998 1.090413806 1.082765071 1.055411429 1.089249951 1.044067719 1.042622821 1.066150532 1.056756118 1.101362021 1.062022674 371586737 phn Rahnella aquatilis CIP 78.65 = ATCC 33071 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 0.90220952 0.891317087 0.864258519 0.938490606 0.894790118 0.866152527 0.91981595 0.886740482 0.949582376 0.896309885 0.892834794 0.938083806 0.901583257 0.833907923 0.809624603 0.876662067 0.920654876 0.925065297 350275800 PEPC Thermoproteus tenax Kra 1 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 0.906530973 0.838117106 0.798258437 0.820396646 0.864255348 0.842831744 0.827211126 0.801037659 0.809182206 0.878107037 0.817377368 0.766477954 0.79560623 0.816299243 0.772615223 0.856185312 319742946 tehb Lautropia mirabilis ATCC 51599 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 1.050910265 1.112104003 0.941374069 1.039272931 1.028520043 1.060905847 0.973751675 0.99816145 1.018809886 1.051293593 0.964921886 1.024105959 1.006736748 1.01359275 0.922897428 0.999655751 1.059286304 1.094381928 134102989 endochitinase Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.794119381 0.862992608 0.825932205 0.870562046 209960629 sqr Rhodospirillum centenum SW Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 1.212803974 1.224127032 1.18721826 1.221742936 1.148937517 1.239132091 1.167555737 1.193028121 1.193279996 1.208249946 1.154672552 1.1739506 1.163469206 1.202443754 1.130713662 1.188517836 1.206655686 1.228814962 354616263 terc Saccharomonospora paurometabolica YIM 90007 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 1.12346172 1.11783082 1.11046958 1.108792217 1.070335763 1.07577441 1.076201258 1.084501377 1.128043552 1.087429471 1.073154956 1.105878361 1.055336785 1.026901528 1.018743162 1.03450354 1.093057727 1.063434512 311312461 bphc Aeromicrobium marinum DSM 15272 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 1.152881648 1.136660507 1.149934719 1.161763646 1.174374643 1.157473176 1.164940284 1.169988359 1.168929038 1.145872116 1.140009251 1.157744756 1.147574523 1.117323704 1.120735252 1.101337949 1.133491807 1.114892407 365844112 amyA Flavonifractor plautii ATCC 29863 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Flavonifractor plautii; 0.782903533 0.825270235 0.782482891 0.785191988 0.781229964 375147070 amyA Niastella koreensis GR20-10 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 1.036777164 0.939999679 0.982431251 1.07105884 0.981480168 0.972073431 0.973053531 1.036067507 1.053436631 0.931253497 0.959255841 1.002792562 0.942062483 0.910355995 0.902626281 0.933671308 1.024951505 0.954459404 238598280 Dyp Moniliophthora perniciosa FA553 Organic Remediation halogenated compounds NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 0.825098971 0.810510717 0.850292306 0.840280594 0.832458429 0.822734563 0.795356656 0.919117422 0.822586752 0.844126795 0.875352091 355361862 badh Desulfotomaculum gibsoniae DSM 7213 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 0.959228478 0.948613835 0.956866772 0.985755417 0.875810968 0.953934711 0.930261996 0.959493054 0.960792064 0.957337329 0.920307924 0.964414118 0.876286833 0.923986521 0.905705697 0.890402231 1.022132655 0.959537162 40888721 protease_serine_fungi Beauveria brongniartii Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Cordyceps;species:Cordyceps brongniartii; 0.767497347 0.790324475 0.82986626 0.780388314 0.813008481 260427193 GAPDH_Calvin Citreicella sp. SE45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1.132699098 1.097540412 1.120874546 1.105799718 1.222379011 1.105786231 1.065256686 1.091928065 1.125124989 1.079845889 1.098783986 1.093312725 1.07295605 1.037978383 1.037436207 1.060184114 1.115202512 1.075406203 211905377 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.782434883 0.812517783 49530588 one_ring_12diox Acinetobacter sp. ADP1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 1.120191855 1.087885858 1.10734655 1.113806108 1.082871567 1.097665289 1.077854385 1.126200356 1.109261245 1.108920153 1.073693307 1.108281031 1.066414114 1.06898036 1.034901544 1.079080214 1.087793037 1.082659135 345302150 amyA Rhodothermus marinus SG0.5JP17-172 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 0.982885652 1.036782598 1.010143468 0.977593922 1.042634142 1.004426938 0.995496824 0.975102282 0.984483782 0.965698451 1.026018403 1.005459039 0.921651025 0.877835951 0.869197106 0.941338251 0.919888476 0.959426654 386721003 bphF1 Paenibacillus mucilaginosus K02 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.011586054 0.998654859 0.885914495 0.973700761 0.880886496 0.96800163 0.918709064 0.948403854 0.98723548 0.948968378 0.877955869 0.930390444 0.852094143 0.88624898 0.806983113 0.917808235 0.988586645 1.017302581 37925029 nifh uncultured nitrogen-fixing bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.936478346 0.916951478 0.894956873 0.916342608 0.899629644 0.885804112 0.951314509 0.899850441 0.926259577 0.92162519 0.896805774 0.932980768 0.871613832 0.877381036 0.855579877 0.896838767 0.924400084 0.893736772 116255378 linc Rhizobium leguminosarum bv. viciae 3841 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.977595966 0.966784727 0.993058073 1.001608447 1.000276692 0.984130746 0.921052787 0.994819581 1.014343575 0.966443862 0.974153466 1.004263969 0.941083745 0.966678852 0.889759468 0.957789535 0.992648752 0.986671349 169847738 badh Coprinopsis cinerea okayama7#130 Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.912457257 0.992722019 0.919904334 0.960560954 0.886602541 0.947957588 0.918032343 0.923723611 0.96779788 0.962202947 0.886552137 0.945256819 0.876209811 0.908914461 0.840602684 0.920768499 0.98498786 0.992409628 209967302 PRK Rhodospirillum centenum SW Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 0.919610399 0.831116905 0.891508063 0.900507288 0.861579602 221727407 ara Agrobacterium radiobacter K84 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1.165124846 1.133187391 1.079680345 1.117418255 1.118017382 1.123532224 1.135027054 1.14487059 1.122642432 1.099176322 1.125289066 1.107623058 1.087178055 1.037191275 1.066258541 1.03681798 1.114082467 1.10314373 218759920 codh Desulfatibacillum alkenivorans AK-01 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 0.909972219 0.878614851 253826201 one_ring_23diox uncultured bacterium L11E10 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.048026594 1.059080588 1.076676615 1.080759125 1.063126568 1.07530648 1.095024871 1.026077841 1.057090605 1.085433932 1.10896562 1.092703565 1.047325891 1.024453273 0.966883009 1.015728171 1.0420478 1.017307065 331695171 merb Pseudonocardia dioxanivorans CB1190 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 0.82418223 0.898075133 0.852298343 0.902437829 0.861199849 0.884593644 0.872316105 0.853312477 0.847919477 0.918198541 0.88195844 0.836414721 0.858765189 0.826846634 0.870808697 0.884545887 110337616 ppx Acidovorax sp. JS42 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 0.946399372 0.887052085 0.965451485 0.946123021 0.985768468 0.957073133 0.964264136 0.972295837 0.982267074 0.946152196 0.953677656 0.957729232 0.964671335 0.925223539 0.900725497 0.919400062 0.954977969 0.958069481 77539313 mhqa Burkholderia sp. NF100 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.069792261 1.091261338 0.999897022 1.016089514 1.017027262 1.083546042 0.989171413 1.023626241 1.059743763 1.052526648 1.010752305 1.009019316 1.007692547 1.036966792 1.008784951 1.099811772 1.057240564 1.071182104 116634799 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.941082149 0.885007155 0.906627959 0.925606622 0.88753921 0.865875932 0.889086099 0.914855967 0.89766755 0.850084656 0.823485776 0.898168468 0.89067065 0.844210007 0.829195844 0.94890493 0.866493753 283474200 acetylglucosaminidase Xanthomonas albilineans GPE PC73 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 1.097508828 1.101135134 1.065893405 1.070407142 1.160064885 1.119832001 1.088965283 1.040369541 1.071398951 1.078420516 1.08698021 1.073701674 1.041815366 1.07084722 1.021651371 1.032976598 1.129677007 1.105581721 90655547 CsoS1_CcmK uncultured marine type-A Synechococcus GOM 4N23 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.854491794 0.898880397 0.825069017 0.788939153 0.878164832 395774102 catechol Streptomyces acidiscabies 84-104 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 0.823977769 0.850369516 0.843546423 0.883524045 0.852594337 0.88467664 0.817138638 0.837031071 0.86228614 0.878968988 0.839465876 0.887126096 0.867248132 0.887437507 0.817549156 0.838759886 0.844071608 0.869380979 13242044 proO Arthrobacter keyseri Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 1.03695912 0.995354413 1.012588843 1.044186685 1.035812844 1.025281873 1.032453904 1.017377335 1.042133965 1.030898442 1.036580842 1.031196194 0.967732769 0.968054096 0.999121737 0.97612771 1.0440503 1.061219631 83701122 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.997374604 1.094860425 0.993780966 0.987740399 1.000081415 0.997410358 0.935853851 0.952822281 0.98806878 1.041287039 0.993107577 0.98772239 0.933304222 0.97496525 0.916712872 0.943714508 1.016551088 1.032305483 322832784 alginase Rahnella sp. Y9602 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 0.971271642 0.87477154 0.952720563 1.000413915 0.913504939 0.996920898 0.968569161 1.011691177 1.022020957 1.000218367 1.062443681 0.983584296 0.957451737 0.926277521 1.035645096 0.977781466 1.021623456 0.947248502 374846270 vgb Nocardia cyriacigeorgica GUH-2 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 0.929269099 0.919860291 0.871755494 0.934939545 0.824519171 0.805414294 0.922773434 0.847072586 0.818290732 0.856922541 0.839698008 0.862108906 0.903701013 46850236 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.982179814 0.985118133 0.94360072 0.912757338 0.931176788 0.952538086 0.894858085 0.94695278 0.9643884 0.902355535 0.906596944 0.970246484 0.888567121 0.906836559 0.844341039 0.893585631 0.95342983 0.989722353 288897230 sqr Allochromatium vinosum DSM 180 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 0.865507585 0.858347001 0.830828172 0.87372822 0.834589131 0.857800408 0.838414439 0.840980352 0.878690718 295058901 cysI Enterobacter cloacae subsp. cloacae ATCC 13047 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 1.273025397 1.204207284 1.253829166 1.298170299 1.227095202 1.207496259 1.254871667 1.290010755 1.279659925 1.202401576 1.219702351 1.279724641 1.216941552 1.157034465 1.194243871 1.238032355 1.258077204 1.188125812 183580359 gdh Kocuria rhizophila DC2201 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 0.900628771 0.954896184 0.865156202 0.864797738 0.891032966 0.854242738 0.874877815 0.850847355 0.896908127 0.901014606 0.859801166 0.893841285 0.836250718 0.851767433 0.836674128 0.880197197 0.928723127 84392934 mer Oceanicola batsensis HTCC2597 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 0.808486962 0.795367995 0.821981214 0.806229423 148272611 amyA Clavibacter michiganensis subsp. michiganensis NCPPB 382 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 0.882416979 0.965267132 0.824337337 0.90813006 0.942578108 0.92809964 0.911492253 0.921546543 0.906130646 0.915912128 0.86449685 0.989368482 0.910528161 0.911263426 0.944045328 0.899334087 0.918866237 0.886591826 326951033 catechol_b Pseudonocardia dioxanivorans CB1190 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 1.254839487 1.239226892 1.101380049 1.102433318 1.156140354 1.202182569 1.171089178 1.245314841 1.163288929 1.221218921 1.20614281 1.225878902 1.154449639 1.257453154 1.076545984 1.201634884 1.176118095 1.219520616 304393531 alkk Ahrensia sp. R2A130 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 0.902673742 0.864015537 0.84520072 0.92057895 0.829068286 0.862083978 0.846241215 0.908418323 0.849262944 0.882357216 0.844598852 0.862524798 0.910405729 0.85994546 83369490 amyA Rhodobacter sphaeroides ATCC 17025 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1.088812784 1.096163481 1.108261901 1.149769077 1.105505619 1.126173788 1.088952829 1.110163569 1.125377971 1.098737871 1.100473267 1.109281528 1.103904862 1.087229493 1.09989965 1.059167965 1.102852978 1.107158283 357078330 pcag Frankia sp. CN3 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.013621097 1.015129167 0.980732522 1.002332048 1.01800292 1.023513636 1.001255202 0.997063997 0.998743899 1.042176699 1.013553484 0.990114575 0.999896675 0.981862239 0.896000181 0.974361725 1.022782267 1.050947137 114050057 vana Streptomyces ambofaciens Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.539840738 1.533282699 1.513578328 1.524080521 1.486870121 1.551241134 1.493991722 1.496354069 1.498325171 1.504993326 1.502673063 1.493476489 1.45955945 1.459656125 1.440228715 1.477167965 1.51820542 1.498539833 154248300 TIM Xanthobacter autotrophicus Py2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 1.065947979 1.009455722 1.007122732 1.066131578 0.992074476 1.016336553 0.997416895 1.025097437 1.060097034 1.006559462 1.034185284 1.042424193 0.970133788 0.990409541 0.953002337 0.981569333 1.06071157 1.029384346 327372764 cysJ Burkholderia gladioli BSR3 Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 0.980269375 1.034295484 0.95199299 0.998098275 0.997375177 1.050875518 0.944218114 1.004328833 1.003760816 0.98770293 0.947028229 0.997452832 0.953153955 0.962953573 0.985818646 0.963087251 1.018092922 1.058690909 126388874 terc Acinetobacter baumannii ATCC 17978 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 0.772027006 0.874981507 0.845328502 0.888296798 0.871182557 0.771259559 0.868335279 0.864840031 0.919924888 0.843681436 0.840309535 0.836623663 0.876485479 90419809 xyla Aurantimonas sp. SI85-9A1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 1.071861678 1.067974548 1.050260305 1.102842976 1.083243026 1.074839882 1.060362817 1.061405829 1.050669487 1.047469787 1.047205838 1.132184082 1.064020685 1.007718959 1.023599514 1.061749531 1.095091229 1.046188082 320450065 terc Thermus scotoductus SA-01 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 0.808872709 0.809577226 0.843558565 0.87494076 0.864832418 0.831354089 0.809363353 0.802881262 0.837830656 0.837820841 62149186 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.026209563 1.032768829 1.057627418 1.079199333 1.041760295 1.036980179 1.012055377 1.105674392 1.032974839 1.042112833 1.010784467 1.048608403 1.017302534 0.974429974 1.015597553 1.023731401 1.061567762 1.022383947 297153785 tfth Streptomyces bingchenggensis BCW-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 0.900591949 0.929619914 0.899479468 0.850488833 0.891541767 0.815117451 0.879067584 0.909397577 0.883551688 0.894819324 0.832318604 0.86064938 0.916673411 0.914129545 0.913650847 297203243 amyA Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.032835072 1.029520966 1.028827262 1.035716203 1.059869495 1.065288768 1.001825921 0.996639496 1.012043869 1.017210143 0.978308917 0.999737725 1.016016263 0.985818328 0.971458496 1.024464149 1.049640348 1.040610963 220729047 rgl Postia placenta Mad-698-R Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 0.96590117 0.918324111 0.960116095 0.947473905 0.994751442 0.962972241 0.989838707 0.997024516 0.967538676 0.944116915 0.971670682 0.947444261 0.966055607 0.947011083 0.882057386 0.92230326 0.943477544 0.953508171 270291528 xyla Pediococcus acidilactici 7_4 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 0.92374319 0.874336213 0.808641472 0.774465443 0.992358835 0.899443213 0.881318662 0.85408415 0.87757996 0.935559059 0.934574806 0.881003652 0.902744977 0.877388494 0.897204436 0.869643754 0.928896799 390576292 bend Burkholderia terrae BS001 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.826287551 0.839796943 0.814660203 0.795131937 0.811143479 0.793874669 0.817141553 0.877505435 0.833603132 0.843692761 0.798418655 0.799909586 0.884990589 0.827919926 0.869791033 155964457 nasa uncultured marine bacterium Nitrogen Assimilatory N reduction NA superkingdom:Bacteria; 0.961192986 0.940150136 0.948583717 0.974591836 0.958085156 0.966637423 1.053325289 0.952487252 0.978087717 0.92645547 0.971126696 0.994122009 0.905342237 0.930611617 0.875482025 0.958042089 0.964718229 0.924228509 315506270 amyA Micromonospora sp. L5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 1.038452666 1.084401461 1.006777427 1.054521008 1.00287144 1.042265655 0.984616107 0.969272142 1.020833368 1.017488845 1.016547088 0.981881092 1.000814722 1.005315549 0.959068224 0.987861489 1.043640827 1.053278491 258544992 cysI Cardiobacterium hominis ATCC 15826 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 0.934878786 0.932435301 0.914872036 0.928347344 0.923344173 0.885129713 0.88286538 1.47292207 0.934737721 0.938843063 0.945089737 0.885143265 0.863391667 0.911266326 0.860146614 0.927057159 0.841632007 0.927318598 71273718 mnp Trametes versicolor Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 1.283835947 1.272935918 1.219614226 1.254046361 1.228084618 1.256729424 1.205459602 1.24062682 1.20408829 1.218006583 1.20667367 1.234672255 1.195696105 1.190285616 1.184020305 1.217921377 1.264206076 1.243538984 219965760 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.204275858 1.178558268 1.19061239 1.211575979 1.12829551 1.15880633 1.142326441 1.172018324 1.169098023 1.141324234 1.153099306 1.182979142 1.145584863 1.111193346 1.128056802 1.148885247 1.195560285 1.138878253 357941172 chitinase Burkholderia sp. YI23 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.893866264 0.864532411 0.892914786 0.817713427 0.875081729 0.900804395 0.810212161 0.807818043 0.872834127 0.883895136 7013021 exoglucanase Trametes versicolor Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 1.014368644 1.041025378 1.031634618 0.99934301 0.983234948 1.058934028 0.964210533 1.019267591 0.991511732 1.00883923 0.969067179 1.013428136 0.994050603 0.951078786 0.923088502 0.983174772 1.037072336 1.020625978 13249571 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.896861789 1.028565978 0.852398163 0.927291569 0.944598487 0.852404641 0.906190715 0.876475867 0.918483853 0.834959229 0.846903892 0.929189468 0.957991366 0.806043326 0.925502155 0.865012996 0.885079999 88062453 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.890867961 0.911745064 0.888757039 0.929087974 0.903705038 0.835351496 0.8720762 0.895447686 0.853528061 0.864661251 0.902315917 0.862475816 0.812293246 0.830356266 0.86405237 0.81807276 338732190 ppx Simkania negevensis Z Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Simkaniaceae;genus:Simkania;species:Simkania negevensis; 1.148215514 1.125103326 1.096734907 1.098072105 1.107355534 1.128421636 1.068643323 1.15163737 1.071719647 1.067406918 1.084402377 1.062915187 1.075975219 1.084132894 1.024138895 1.043962356 1.082564484 1.120875056 90426095 beta_agarase Rhodopseudomonas palustris BisB18 Carbon Cycling Carbon degradation Agar superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.987474583 0.974719368 0.987789347 0.964055863 1.018753161 1.000739135 0.992532157 0.903269998 0.941753623 0.992255848 0.968624602 0.912042307 0.879429585 0.94105618 0.845424037 0.9228468 0.962964378 1.007322832 157060173 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.965759871 0.907384799 0.940624692 0.989431342 0.942869072 0.948979001 0.951825986 0.996147288 0.99041649 0.910630042 0.89894751 0.936121464 0.919485252 0.894312759 0.983221893 0.926864244 0.974441249 0.934299812 323529399 tktA Burkholderia sp. CCGE1001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.953839931 0.80642092 0.838896095 0.80997123 0.815531131 0.791129266 0.811343175 0.870101959 0.801151172 0.831250366 0.850016299 110819013 chnb Rhodococcus sp. RHA1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.946129508 1.035803539 0.948015961 0.992823132 0.946772547 0.948121275 0.962865206 0.871120575 0.864235217 0.942721992 0.923462389 0.932251309 0.919201958 0.944568876 0.931280323 0.91892458 0.958726361 0.963894728 254820638 cutinase Mycobacterium intracellulare ATCC 13950 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 1.046846622 1.062753487 1.038433041 1.078264151 1.021051193 1.067352263 1.021888482 1.026606124 1.010038238 1.026861937 1.028677662 1.036574492 1.045970763 1.031908549 1.007037567 1.019365656 1.055304216 1.028204437 196226253 amyA Chthoniobacter flavus Ellin428 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 0.97459285 1.043966751 0.965280151 1.024091145 1.005086415 0.982929346 0.972679609 1.013933919 1.010708049 1.000021322 0.995208574 1.003725441 1.004646589 0.985960342 0.949419142 0.987141339 1.013072085 1.007560809 229611249 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.880349246 0.878159544 0.92557368 0.876416067 0.853862505 0.906824976 0.811107926 0.874217756 0.864900683 0.925020588 0.870256589 0.910108831 0.869965641 0.883158441 0.820971817 0.867259803 0.936833265 325916102 xylanase Xanthomonas vesicatoria ATCC 35937 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 1.137552215 1.129844898 1.127400872 1.123264916 1.107523375 1.125099177 1.088666268 1.131905141 1.15048019 1.112241917 1.099326356 1.11510059 1.092923906 1.090596641 1.047464073 1.092888861 1.136136937 1.131651666 60116876 protease_serine_fungi Davidiella tassiana Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Davidiellaceae;genus:Davidiella; 0.91651773 0.926425451 0.845290333 0.922994199 0.889731461 0.909164713 0.897155022 0.868276888 0.91352207 0.896643031 0.859202793 0.942111249 0.837413229 0.883760018 0.860664053 0.874446988 0.931230813 0.874746583 77459186 catechol Pseudomonas fluorescens PfO-1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.049210765 0.999761673 1.056281198 1.03999762 1.037702493 1.010282647 1.036574535 1.067459877 1.033848505 1.032821929 0.988699377 1.027981194 1.000103746 0.954211529 0.948389101 0.940497535 1.005341431 1.009125271 374573853 FBPase Bradyrhizobium sp. WSM471 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.184690032 1.158375524 1.151225391 1.159475032 1.155733335 1.174644054 1.157092068 1.154627149 1.156117869 1.171090319 1.160841973 1.149495822 1.145328393 1.128275565 1.122413284 1.142820527 1.160670832 1.169263066 95133480 nrfa Desulfuromonas acetoxidans DSM 684 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 0.967290431 0.95236396 0.939024508 0.920502769 0.94202927 0.962984952 0.974419603 0.952505503 0.951576366 1.01045041 0.984667965 0.978477301 0.962549361 0.972696918 0.872956753 0.928083629 0.936570452 0.991720696 386723166 B_lactamase_A Paenibacillus mucilaginosus K02 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 1.286912167 1.242092862 1.241636638 1.273263716 1.254100074 1.276197041 1.23185646 1.24806969 1.280355395 1.239542556 1.238382716 1.264867843 1.23794323 1.203879303 1.2073921 1.181738558 1.282758252 1.251539812 226241359 cysJ Rhodococcus opacus B4 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 0.788907328 0.782679372 0.793892941 0.769549517 0.801707217 0.773086444 0.809136298 0.822214551 0.801855749 0.795888544 0.827922052 26278694 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.852008001 0.905820088 0.897848867 0.855230307 0.851234527 0.856754392 0.833127885 0.851956818 0.865730455 0.887411935 0.907238788 0.879072748 0.874114662 0.860419459 0.862070544 0.903779319 0.863155809 326385161 arsc Gordonia neofelifaecis NRRL B-59395 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 0.900923315 0.925500176 0.883232319 0.840440578 0.876645747 0.874219112 0.88230228 0.850283092 0.90313747 0.884992842 0.886791597 0.893726403 0.870397436 0.860709207 0.877581343 0.89262475 0.923047899 292665135 ppx Candidatus Puniceispirillum marinum IMCC1322 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 0.881280812 0.835409385 0.883365478 0.921854514 0.887535253 0.845676217 0.857071822 0.932385378 0.908604014 0.883189384 0.856546371 0.873905504 0.883095305 0.812374856 0.826879305 0.83392294 0.917534371 0.841377208 300311094 TIM Herbaspirillum seropedicae SmR1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 1.477086156 1.449180813 1.452488007 1.45327521 1.438112135 1.471307552 1.443148053 1.471259405 1.451466747 1.412575552 1.442018456 1.453210633 1.437379546 1.372378847 1.418250767 1.413926178 1.458508443 1.3882599 71915762 cellobiase Thermobifida fusca YX Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 1.14075876 1.178354519 1.125481125 1.139590359 1.124616927 1.16955488 1.127769818 1.062176507 1.233520814 1.163812788 1.134659295 1.134554145 1.131266462 1.131564133 1.096449278 1.136445674 1.140798315 1.163395977 298291286 GAPDH_Calvin Starkeya novella DSM 506 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 1.267466678 1.239617258 1.261990061 1.242791676 1.202690042 1.268032308 1.180012215 1.212941273 1.244407774 1.232853828 1.222860534 1.229460842 1.208647912 1.212428064 1.203636912 1.222526658 1.264929336 1.242638089 364000869 mult_ring_12DiOx Mycobacterium abscessus subsp. bolletii BD Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 0.949936906 0.996415766 1.005219585 1.038686517 0.998565024 0.957074982 1.028334582 0.900344335 0.985432572 1.003728878 0.957530356 1.023051498 0.946495755 0.963321737 0.930915839 0.947817415 0.939427376 0.961327126 359835666 cutinase Actinoplanes sp. SE50/110 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.937678178 0.898232558 0.940544998 0.926676141 0.855983398 0.860240992 0.863298686 0.868585354 0.916029509 0.891561379 0.857116675 0.935649829 0.842008813 0.8683966 0.875949516 0.830452611 0.945230218 0.947331041 320448245 pula Streptococcus equinus ATCC 9812 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equinus; 0.900852967 0.878302476 0.896091259 0.985837233 0.946701011 0.890908059 0.963950705 0.929343113 0.940909199 0.864756398 0.950532255 0.931083247 0.943494827 0.890442433 0.873844534 0.867999935 0.890855572 0.898836975 258512385 cysI Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Sulfur Other NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 1.155590719 1.0939247 1.113977298 1.141811555 1.147995734 1.136084765 1.124631382 1.138544874 1.135155058 1.121788134 1.111884876 1.128925891 1.110389657 1.08974405 1.115934723 1.124842444 1.145132727 1.114542794 94311748 cysI Cupriavidus metallidurans CH34 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 0.9507698 0.978283436 0.917364463 0.976352605 0.899578556 0.930817389 0.875051826 0.916637294 0.875067925 0.943941583 0.90197042 0.935845751 0.90757004 0.884917437 0.857527427 0.884085475 0.984405797 0.943506627 374724917 fthfs uncultured marine group II euryarchaeote Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Archaea;phylum:Euryarchaeota; 0.889837781 0.872484473 0.870302987 0.898388485 0.882575788 0.883124711 0.873052515 0.884678857 0.901863733 0.897176054 0.899056477 0.891606685 0.86233102 0.806904272 0.813545488 0.881721473 0.919158856 386391496 amyA Desulfovibrio sp. U5L Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 1.155647208 1.173780185 1.122927356 1.123435376 1.111386554 1.139462277 1.090616006 1.102038954 1.115282306 1.135645568 1.129268276 1.116603323 1.122026445 1.107323384 1.091880634 1.090621298 1.156752241 1.184318426 78168788 amyA Synechococcus sp. CC9902 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.968952825 0.962759019 0.971475777 0.965010044 0.939603901 0.970308999 0.921234543 0.967668337 0.968291619 0.941343545 0.894938549 0.92213357 0.906621342 0.890196464 0.873988697 0.920480072 0.958903226 0.989424367 187924691 nitrilase Burkholderia phytofirmans PsJN Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 0.778462528 0.86710796 0.819833999 0.802108212 359736225 amie Rhodococcus pyridinivorans AK37 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 0.791670759 0.862230859 0.866692472 0.825039659 0.897306221 0.909935552 0.84897205 0.862737913 0.874493197 0.836642935 0.834079394 0.825913824 0.912762313 157780232 hsp90_Choanoflagellida Savillea micropora Other Phylogenetic NA superkingdom:Eukaryota;order:Choanoflagellida;family:Acanthoecidae;genus:Savillea; 0.916304545 0.930384194 0.915416619 0.936761682 0.848260749 0.935892132 0.853074416 0.940929444 0.928666075 0.934374427 0.896670846 0.925726469 0.855056876 0.909000596 0.848654978 0.885866055 0.907501525 0.918960134 322718567 phenol_oxidase Flammulina velutipes Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Physalacriaceae;genus:Flammulina; 1.042751691 1.039327882 1.051973215 1.08447827 1.033309253 1.093271725 1.006898917 1.020873242 1.056554224 1.035061456 1.041480826 1.030735807 1.012561166 1.037997811 1.000188453 1.03049728 1.106820568 1.027150102 119467366 exopolygalacturonase_fungi Neosartorya fischeri NRRL 181 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 1.174151805 1.140898885 1.133817901 1.11941592 1.134571068 1.151291189 1.066618088 1.11778036 1.117553106 1.139174744 1.12784519 1.114703791 1.119549117 1.142928537 1.110680658 1.135126226 1.138865051 1.144972397 389793856 catechol Rhodanobacter fulvus Jip2 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 1.071508868 1.032019056 0.957267139 0.973292431 0.957422887 0.966458891 0.954044082 0.925430854 0.986624495 0.952497456 0.983398631 0.999666615 0.94706786 0.919492507 0.937138794 0.959461711 0.99552563 0.988787883 302696029 Glucose_oxidase_fungi Schizophyllum commune H4-8 Carbon Cycling Carbon degradation glucose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.033239978 0.993622756 1.012465934 1.007487277 1.020966586 0.976442418 0.95928927 0.985340863 0.987840696 163811721 rd Dehalococcoides sp. VS Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 0.901175666 0.891523521 0.855123313 0.894152472 0.833356226 0.915955219 0.895278298 0.883056736 0.868567439 0.873463461 0.846326221 0.88825218 0.843930453 0.863866712 0.83619123 0.861988502 0.866701444 391220683 terc Opitutaceae bacterium TAV1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 1.436962171 1.399716913 1.373750315 1.406516982 1.360488906 1.417453735 1.355441481 1.378371753 1.361698892 1.363009066 1.361684207 1.380706116 1.354481841 1.342898496 1.340103725 1.367553173 1.41622707 1.364313725 83646392 phytase Hahella chejuensis KCTC 2396 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 0.887099544 0.836447639 0.839625472 0.840970447 0.836482851 58613941 mdla Pseudomonas fluorescens Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.82331983 0.827019301 109702617 cysI Pseudoalteromonas atlantica T6c Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 0.776671228 0.835537553 0.827177413 0.829122128 0.80074447 0.825356066 0.887786609 0.806291043 0.853376216 0.842503322 0.813130569 0.823780578 0.891876027 0.84086896 30138582 hao Nitrosomonas europaea ATCC 19718 Nitrogen Nitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 0.815328115 0.790914238 0.814816052 0.817489856 0.853505095 0.839520229 0.904856276 0.806403863 0.787729917 0.905888422 0.892564492 0.860431176 0.835900073 0.802970556 0.767716451 0.854214169 83836470 FBPase Roseovarius nubinhibens ISM Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 0.912680687 0.878510318 0.837748379 0.917957164 0.870228486 0.867250133 0.876459606 0.837777252 0.899039061 0.889459286 0.91662098 0.873058531 0.853544173 0.903889225 0.885322292 0.903926506 0.886734696 84684901 TIM Maritimibacter alkaliphilus HTCC2654 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 1.586424886 1.543625633 1.552568824 1.560220482 1.535976584 1.575377012 1.536231921 1.578557833 1.538499303 1.515713307 1.541090611 1.590088696 1.508567242 1.518871562 1.519098055 1.557960275 1.52827753 1.519961646 311217934 tktA Rhodomicrobium vannielii ATCC 17100 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 0.803943205 0.814192542 0.830397128 0.795690809 0.819837342 0.830504328 371650884 amyA Lachnospiraceae bacterium ACC2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Stomatobaculum; 0.874944896 0.868073889 0.853382263 0.881978284 0.882548214 0.842516601 0.845906224 0.845874283 0.898144529 0.897932741 0.799760073 0.81662367 0.833985462 0.87067829 0.819423258 0.833063405 0.864802233 91690366 exaa(moxf) Burkholderia xenovorans LB400 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1.026265897 1.069624001 1.00388807 1.00675481 0.998457737 1.012535061 1.009749684 0.998391673 1.028668453 0.99032868 0.977955019 1.019300884 0.992805252 0.944693726 0.949249787 0.943156 0.990246701 0.991695943 357174165 cda Clostridium sp. DL-VIII Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 0.990712118 1.024477164 1.023517658 1.015680349 0.970423557 1.028189975 0.951550321 1.064118466 1.005559579 1.040172993 0.979789112 1.086548316 0.973793906 0.996126248 0.940179713 0.992666052 1.006614662 1.021616552 254460155 FBP_aldolase Rhodobacterales bacterium HTCC2083 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 0.83701263 0.819788705 0.84572964 0.881072288 0.809692803 0.822500547 0.803410043 0.853029097 0.833076802 170027533 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.859508962 0.823168701 0.854388128 0.869358437 0.866398712 0.82103266 0.859184812 0.856853358 0.883668785 0.838018449 0.848162105 0.817532188 0.841538629 0.825295348 94983173 silicon_transporter NA Metal Homeostasis Silicon Transport 0.951168459 0.908357911 0.937156436 0.901186039 0.904683931 0.929470639 0.952874864 0.897862172 0.883413229 0.950998463 0.912269806 0.904091582 0.795955143 0.893280327 0.878037863 0.845903112 0.895154788 83415007 phenol_oxidase Termitomyces sp. NS/Mg Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Lyophyllaceae;genus:Termitomyces; 0.839577615 0.812357431 90204437 urec Mycobacterium vanbaalenii PYR-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 1.143978827 1.217755244 1.140363718 1.146208998 1.150266121 1.226915479 1.143018873 1.152240733 1.165975205 1.178159705 1.152890494 1.17721709 1.152536119 1.169129073 1.143241858 1.170900636 1.17460681 1.188469901 255267507 CsoS1_CcmK Bryantella formatexigens DSM 14469 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 0.955190454 0.938277752 0.918033407 0.969258031 0.941786791 0.950926464 0.936548041 0.942451492 0.949579352 0.955072484 0.938349497 0.939535946 0.942502967 0.955878424 0.876656587 0.932276423 0.985453472 0.930439821 283458650 ppx Rothia mucilaginosa DY-18 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 0.998730066 1.022251202 0.975091544 0.98889631 0.994553672 0.999276145 0.973424975 0.952841439 0.950870748 1.021788351 0.991272541 1.013652318 0.994525306 1.018463101 0.95968458 0.971740989 1.006644307 1.030261501 159180621 fccab alpha proteobacterium BAL199 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1.264010454 1.252126551 1.260088357 1.245160838 1.241799563 1.289598743 1.23903467 1.224993448 1.224323413 1.203110032 1.220980925 1.215921787 1.214460589 1.201839995 1.179330976 1.258019432 1.247327947 1.260149417 299798751 RgaE Amycolatopsis mediterranei U32 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.869176447 0.85144002 0.849863918 0.856462931 0.855780694 0.845586175 0.811300037 0.838949132 0.847437622 0.821503804 0.85894727 0.857515589 0.809408225 0.7830225 0.863967393 0.845049173 309261781 narg Diaphorobacter sp. R-26815 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Diaphorobacter; 1.096739819 1.083475729 1.074184492 1.081238503 1.066295579 1.115599887 1.062669124 1.096611124 1.04098532 1.011201452 1.08157357 1.07184745 0.987905097 0.986337896 0.975798449 1.034575946 1.062685775 1.018557358 351780661 alginase Yersinia enterocolitica subsp. palearctica PhRBD_Ye1 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 0.856681982 0.832019584 114537112 nifh Fulvimarina pelagi HTCC2506 Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 1.230454197 1.21101981 1.212202777 1.214899589 1.181938332 1.260574334 1.172173626 1.184111257 1.213866136 1.230826096 1.195710629 1.185931606 1.205605551 1.20649697 1.165208436 1.210951922 1.213446159 1.222520232 77378585 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.782551715 0.84524944 0.83361068 0.826315671 0.858701889 0.808866141 0.812199529 0.793329922 0.818846216 0.840479277 228480945 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.792283838 0.832882991 0.847809398 0.808576405 46307906 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.813749294 0.819528495 0.853147428 0.837089837 0.95061667 0.813567185 0.837707582 0.8649699 45386193 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.864750284 0.85781921 0.905613828 0.891578719 0.859765715 0.911066461 0.830750523 0.832711493 0.820169915 0.890619733 0.854462181 0.838678402 0.823027495 0.862307389 0.885287369 0.8646222 0.869221105 0.876915067 21220895 ara Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 1.036581867 1.008864471 1.020756297 1.039959468 1.033269776 1.038542669 1.025826917 1.029616768 1.014837393 1.008523492 1.020447734 1.015501239 1.001882003 0.97889812 0.915875912 0.953130512 1.038006374 1.030189184 17385522 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.906405576 0.910159023 0.930181962 0.866921321 0.884010936 0.918607863 0.876113821 0.872835887 0.927720471 0.940580058 0.837497591 0.856606228 0.840215448 0.920152916 0.813722905 0.895220167 0.925764324 0.918963633 377526977 catechol_b Gordonia sputi NBRC 100414 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 1.235679267 1.217730738 1.235823125 1.214214313 1.213349636 1.20801973 1.182439709 1.186493647 1.206240971 1.20193316 1.232509271 1.217011941 1.194083557 1.16421606 1.169788171 1.182332268 1.211415593 1.201009686 148537349 one_ring_23diox Burkholderia sp. ASS14 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.847796884 0.812700732 56419238 amyA Geobacillus kaustophilus HTA426 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 1.015887131 1.070480316 1.016078445 1.025167348 1.035318833 1.121512642 1.009837342 1.011688457 1.04772441 1.126333395 1.132177571 1.037945341 0.998953472 1.022887759 0.917822117 1.007487709 1.096716955 1.053122703 187734877 acetylglucosaminidase Akkermansia muciniphila ATCC BAA-835 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 0.820487696 0.80387405 0.850471352 0.834804653 0.833039225 0.850342123 399231174 pcpb Mycobacterium smegmatis str. MC2 155 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.914644734 0.956355253 0.910570206 0.90952243 0.963164549 0.930988022 0.906601777 0.939679077 0.934615618 0.953184108 0.864518849 0.898010392 0.893901396 0.959955199 0.84859628 0.872021615 0.929925203 0.970277683 41395927 cutinase Mycobacterium avium subsp. paratuberculosis K-10 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.031306255 0.98969182 0.99381641 1.020654454 0.971023742 1.016022993 0.973388415 1.002865037 1.014144347 0.980252022 0.96088442 0.985728675 0.949733455 0.983449363 0.977047034 0.975525435 1.034776326 0.998885645 3805970 napa Rhodopseudomonas sp. Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas; 0.796428055 0.795795019 0.824766824 0.867395052 0.807483217 0.819144367 0.789063122 0.822622198 0.883948798 186463160 amyA Nostoc punctiforme PCC 73102 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 1.264223218 1.258622435 1.255743444 1.267023546 1.247898945 1.246029626 1.255547505 1.305143825 1.24923267 1.237368513 1.244081798 1.278962641 1.264256107 1.200525371 1.253824485 1.235776718 1.252066839 1.194747052 126640997 vana Acinetobacter baumannii ATCC 17978 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 0.804892595 0.853118251 0.768765809 0.847063768 320150339 amyA Thermus scotoductus SA-01 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 0.933959494 0.997453413 0.946297304 0.964847646 1.014220581 1.003635359 0.914536681 0.899268541 0.917405328 0.938404714 0.880693354 0.922984744 0.939244914 0.933610293 0.915749436 0.908646468 0.986489803 0.939791355 317970497 ppx Synechococcus sp. CB0205 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.816476437 0.802950338 0.80820069 0.82925802 0.854780911 0.846951252 0.838503796 0.865134104 0.810825071 0.811032572 0.843449963 0.851182926 0.869252064 311743137 linb Aeromicrobium marinum DSM 15272 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 1.054343634 1.03604277 1.051028322 1.060624143 1.016778651 1.011115101 1.004914333 1.060997249 1.032085169 1.040617935 1.042600507 1.058592246 0.982674434 1.014107586 0.957049944 0.994051157 1.054901166 1.019374516 358752685 mer Granulicella mallensis MP5ACTX8 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 1.01625243 1.047286883 0.979809916 1.048369015 0.979146967 1.009926668 0.964349343 0.961645575 1.009412747 1.026568731 0.986404973 1.006641811 1.111255543 0.96510958 0.945856163 0.99724105 1.028897466 1.010598048 269832894 chitinase Vibrio harveyi 1DA3 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 0.9738121 0.978091076 0.919133109 1.053529777 0.963753439 0.99227286 0.940487161 0.945838737 0.966990363 0.992693854 0.947215889 0.932757867 0.984622384 0.997439266 0.880057402 0.937311989 0.983662523 1.026801305 332666918 poba Haliscomenobacter hydrossis DSM 1100 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 0.768862888 0.882325535 0.820276269 0.897981708 0.860013888 0.885344141 0.87015101 0.846426404 0.912321833 0.84086858 0.869027889 0.886925274 0.855214245 0.844780685 0.873822382 0.885364323 0.859811026 0.881384737 242129864 pectinase (pectate_lyase) Dickeya dadantii Ech703 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.913320362 0.889365614 0.963692272 0.940774115 0.904534048 0.825943327 0.896134096 0.888513568 0.909517713 0.907582253 0.926776121 0.937756379 0.904133707 0.933012281 0.900233762 0.908832267 0.878485833 0.855544154 209897542 ppx Enterobacter cancerogenus ATCC 35316 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 1.17683664 1.152583198 1.174630218 1.198792172 1.125328427 1.174337851 1.153506123 1.192439318 1.172162062 1.145841146 1.131663086 1.184842698 1.1175582 1.12721405 1.109407163 1.170538185 1.171328694 1.154160049 152967019 amyA Kineococcus radiotolerans SRS30216 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 0.811397157 0.806279946 0.809350673 0.857995137 0.820700299 0.823681962 0.810764659 0.812948983 0.824593914 0.827081299 0.86031463 0.791209386 0.818627195 161380189 ppx Oceanibulbus indolifex HEL-45 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 1.149933276 1.113477742 1.167156264 1.167006844 1.14237676 1.1624163 1.135781381 1.164217451 1.137732693 1.101596467 1.144669484 1.137262009 1.115077714 1.081511311 1.070733036 1.097462569 1.174542828 1.113457282 222479925 amyA Halorubrum lacusprofundi ATCC 49239 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 1.265421733 1.267005936 1.251236546 1.224332727 1.25076732 1.256984785 1.224963119 1.222236263 1.202378484 1.218253534 1.231012289 1.222004472 1.216577514 1.215989721 1.19287244 1.219367683 1.239391504 1.236158302 90104153 arsc Rhodopseudomonas palustris BisB18 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.28867229 1.292300355 1.256622996 1.24021798 1.255337431 1.304736855 1.256700239 1.250518168 1.229609794 1.227077235 1.257513554 1.234261367 1.247416007 1.242015217 1.250500402 1.272347973 1.251296119 1.248524541 94550000 amyA Candidatus Koribacter versatilis Ellin345 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 1.065018537 1.013025416 1.040268259 1.133934072 1.00629903 1.027797271 1.046667491 1.11123834 1.089210826 1.011573527 1.035935185 1.076957858 0.988061944 0.976620709 1.012097438 1.040578829 1.080727682 1.020381694 377528789 bphF1 Gordonia sputi NBRC 100414 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.988396629 1.024312947 1.120787109 1.021738774 1.030416369 1.159521352 0.951321996 0.993735695 1.021360079 1.035098216 1.022644208 1.013923091 1.10292788 1.064435134 1.150281306 1.107937445 1.103010535 1.097341442 206677631 rd Rhodobacterales bacterium HTCC2083 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1.262055459 1.241780335 1.243012529 1.256714777 1.246905245 1.256012484 1.229768971 1.246074577 1.242928434 1.217398892 1.227649834 1.2502668 1.215968402 1.205472055 1.222732149 1.220435391 1.262580572 1.228477452 317170879 TIM Mesorhizobium ciceri biovar biserrulae WSM1271 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 1.195343894 1.158204878 1.139397411 1.179977496 1.150952836 1.176960712 1.134020113 1.157882982 1.150214014 1.135352243 1.167289073 1.198201774 1.137343164 1.11678686 1.080109739 1.132929556 1.189676908 1.150220486 261419946 amyA Geobacillus sp. Y412MC61 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 0.813414172 0.848021332 63029776 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.280798837 1.221833332 1.290716237 1.283549365 1.247346336 1.357106797 1.245206817 1.258420187 1.264836693 1.257319477 1.269092123 1.267967044 1.219739636 1.214415476 1.226201535 1.287335646 1.332135118 1.233692262 253576694 amyA Paenibacillus sp. oral taxon 786 str. D14 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 1.050841953 1.093029669 1.04797029 1.120225908 1.103892792 1.072829786 1.120930907 1.025175702 1.08731146 1.072904991 1.107975492 1.124944175 1.051950989 0.969834369 0.942400025 1.024477998 1.043841094 1.025323807 328880150 phytase Streptomyces venezuelae ATCC 10712 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 0.966150116 0.980493711 0.925846652 1.026047771 0.971894264 0.957776629 0.938706564 0.925856019 0.96383243 0.957083352 0.91043928 0.958092992 0.923595438 0.942211171 0.907113483 0.934583534 0.991371516 0.960721278 192764350 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.774973342 0.799186814 0.796981348 0.823153904 353211452 fthfs Hyphomicrobium denitrificans 1NES1 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 1.120942617 1.112851649 1.115715065 1.104367887 1.057543037 1.114859618 1.088343602 1.08767243 1.084173237 1.112255219 1.074414306 1.1280534 1.065094924 1.092205722 1.066245138 1.095433081 1.128850928 1.132399015 192293040 dehh109 Rhodopseudomonas palustris TIE-1 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 0.930639866 0.894327706 0.954291607 0.954480219 0.925706793 1.027337819 0.954580429 0.899522262 1.088218513 0.974796875 0.969258953 0.937585115 0.963939477 0.901999381 0.943954174 0.875081972 0.944500414 0.934767105 381165047 amyA Saccharomonospora azurea NA-128 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 1.426540994 1.401981916 1.386464604 1.397142818 1.393760013 1.40604833 1.366972657 1.376796354 1.382017687 1.37049302 1.376838811 1.388837934 1.371926339 1.330418199 1.390436839 1.36777424 1.416305742 1.373762887 28971621 xylg Pseudomonas fluorescens Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.982243834 0.992659489 0.924855728 0.998440565 0.928787226 0.981625592 0.963279526 0.982544855 0.980156014 0.977677351 0.948212175 0.948877332 0.906463538 0.961776022 0.96231846 0.914540042 0.972087106 0.991724087 2597838 nirk Bradyrhizobium japonicum Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.944886457 0.970416417 0.921002611 0.913699671 0.857276253 0.880752855 0.888886352 0.967532794 0.909547919 0.912526501 0.90968894 0.913146681 0.860067618 0.860288785 0.938545396 0.882380315 0.91434883 0.912066973 84383826 amyA Janibacter sp. HTCC2649 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 0.950226486 0.940792606 0.909922759 0.960619249 0.931493964 0.924184288 0.937160589 0.944401288 0.930721422 0.933956669 0.917878668 0.941476766 0.864817332 0.920141713 0.850158862 0.935504953 0.967180469 226235517 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 0.825390493 0.787865236 0.850636584 0.869721376 0.810581784 0.851343539 0.843385919 0.828525021 0.837216969 0.839317045 0.865008359 0.834903428 0.880806237 407698024 alkk Alcanivorax dieselolei B5 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 1.018834664 0.996523164 0.931568944 0.974199427 0.936410305 0.958217786 0.962174134 0.913643172 0.977181775 0.962193283 0.94867876 0.975532454 0.967293064 0.955876165 0.899712784 0.984286391 0.993629207 0.975978061 398088945 pcag Rhizobium sp. CF080 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.146808046 1.162563799 1.10205481 1.128754992 1.114031696 1.145199807 1.060715548 1.10050929 1.06088796 1.124672487 1.07584925 1.107097678 1.082055975 1.071492178 1.065218329 1.103845977 1.110014266 1.130054926 194713779 dmsa Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 0.911804147 0.852634639 0.822877273 0.886386391 0.937470193 0.886277526 0.82993036 0.856025745 0.882506848 0.803096711 0.876384092 0.81475947 0.840659936 0.878216032 0.868806134 332372369 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.820302286 0.805109771 318059357 amyA Streptomyces sp. SA3_actG Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.88148121 0.877854678 0.866670422 0.864861799 0.86417389 0.882188273 0.855583718 0.866322368 0.859203879 0.886462694 0.870327667 0.876011904 0.837638681 0.812228802 0.853506504 0.823692296 0.889217333 0.924399018 76577472 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.029192894 1.043061623 1.054632727 1.030953117 1.039463478 0.995056366 1.06590796 1.085855605 1.053656643 1.038189258 1.018977829 1.01318697 0.985723948 0.981887785 0.961575154 1.063017058 1.026893177 1.065897311 85078541 cellobiase Neurospora crassa OR74A Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 0.879417122 0.857898537 0.889366298 0.806894599 0.847675422 0.810237391 0.864732084 0.864055575 0.835076612 0.797590949 0.826148326 0.818201853 0.844156808 0.835505296 0.86070157 0.810052353 296270224 amyA Thermobispora bispora DSM 43833 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 0.996400948 0.980679464 1.002209012 0.969864534 0.983974763 1.021163567 0.97399024 0.985371918 0.981924379 0.97873343 1.030716432 1.026385049 0.94722821 0.968863957 0.963923748 0.934136612 1.006535329 1.004205512 209520283 glucoamylase Burkholderia sp. H160 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.998157353 0.862614093 0.975949161 0.838890564 0.950482056 0.968426331 0.913871267 0.803110922 0.86955955 0.97679289 1.003699614 0.890561036 0.871036991 1.026258806 1.061276844 0.860655461 0.945250229 0.934049921 385843022 catechol bacterium enrichment culture clone 12CTD Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.04032241 0.972444904 0.942361838 0.994697387 0.931670931 0.983650667 0.925930505 0.985392087 0.975370818 0.972656249 0.910783776 0.979698088 0.938150624 0.951583047 0.929946286 0.972909977 1.019649152 0.964459317 374851108 exaa(moxf) uncultured gamma proteobacterium Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.000062503 0.978239323 0.969374702 0.978070538 1.096465591 1.125477975 1.051759083 0.86259007 0.911556416 1.089013842 1.044360283 1.018789992 1.085421213 1.126582402 1.066518995 1.039780695 1.057737387 1.044018552 37575471 one_ring_23diox Mycobacterium gilvum PYR-GCK Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.230475266 1.204009339 1.22444906 1.238900683 1.239801191 1.213196896 1.238959497 1.248255861 1.229524395 1.215252397 1.22192618 1.218548662 1.212500174 1.170375484 1.162668051 1.186109814 1.213720404 1.205047975 338973617 chnb Bradyrhizobiaceae bacterium SG-6C Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 1.222241729 1.162790886 1.20793217 1.220475481 1.196122893 1.201094886 1.21174024 1.212251551 1.217952736 1.177114117 1.175299673 1.203881762 1.169359001 1.129901582 1.150012048 1.178618394 1.250240037 1.140955575 239988535 xylanase Streptomyces roseosporus NRRL 11379 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 1.189981032 1.209335262 1.138308405 1.188011168 1.097337494 1.19728332 1.156048218 1.159132906 1.166393807 1.162465009 1.121793593 1.127661567 1.129783628 1.117037964 1.057229314 1.114040859 1.174201566 1.213893143 308097641 phenol_oxidase Polyporales sp. 2 ZY-2010 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales; 1.024670689 1.025464127 0.950514292 1.041061032 0.991099232 1.017522762 0.933988742 0.949635958 0.976300305 1.002540322 0.974056941 0.989299821 0.945718342 0.970600818 0.915749887 0.966866075 1.021354331 1.005592739 357939290 mer Burkholderia sp. YI23 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.956361094 0.883270348 0.922385828 0.948911068 0.914649838 0.93916528 0.968402806 0.95144353 0.929212222 0.879831584 0.897175292 0.904263152 0.9286661 0.849762148 0.878663188 0.868999982 0.941124309 0.906223104 325261134 dsra Clostridium sp. D5 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 1.032740024 1.116747479 1.104961108 1.107617907 1.124768181 1.08133202 1.085768828 1.085656586 1.051533078 1.059846021 1.082371938 1.107695445 1.061264933 1.045277944 1.04469208 1.073271572 1.082505681 1.072417002 154686168 xyla Bacillus amyloliquefaciens FZB42 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 0.881195821 0.903758318 0.884640481 0.881595906 0.86901684 0.87514163 0.942553803 0.916168267 0.848593398 0.945233434 0.945972861 0.881313784 0.846466486 0.899360574 0.888537236 0.901549419 0.899221637 0.949563537 379990843 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.353936482 1.346928621 1.306994238 1.339116302 1.311796861 1.36836786 1.322482303 1.321622736 1.315613058 1.303082894 1.328439546 1.31679266 1.304560028 1.28406677 1.301393475 1.315065279 1.357884056 1.29874097 310801488 rgl Glomerella graminicola M1.001 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum;species:Colletotrichum graminicola; 0.888106909 1.005999368 0.934173571 0.908417863 0.929118451 0.922315288 0.834149796 0.910812812 0.904386969 0.874604204 0.980122656 0.906300441 0.867781579 0.851428437 0.821095402 0.844059736 0.916291474 0.912085302 392287470 amyA Frankia sp. QA3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.120300302 1.114840935 1.131151735 1.093007257 1.111300706 1.15974597 1.118158056 1.116333478 1.086024229 1.115108845 1.104815343 1.07784479 1.093722773 1.099970839 1.070546921 1.082399291 1.133333859 1.133807805 256375929 xyla Actinosynnema mirum DSM 43827 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 1.066158561 1.034161186 1.028223741 1.02831656 1.001706899 1.043754113 0.997054152 1.031118091 1.037604356 1.007411374 1.010196914 1.014615225 0.989515331 1.010415546 0.98002473 1.003670315 1.011223897 1.024611538 118697686 catechol Burkholderia ambifaria MC40-6 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 1.119557297 1.121677785 1.139909539 1.093090615 1.112023664 1.138750988 1.097802775 1.123024695 1.119079451 1.109897697 1.112269787 1.099202817 1.102470111 1.16317793 1.147677893 1.113831291 1.123468601 1.138250386 323365742 nifh uncultured microorganism Nitrogen Nitrogen fixation NA 1.074163853 1.063262703 0.932513631 0.991621173 0.954819852 0.957537284 0.909303021 1.027549066 0.983750301 0.933618233 0.895302858 0.977328015 0.93089624 0.925311937 0.911313896 0.920685429 0.982943315 0.953100776 83318864 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.826533554 0.846267763 0.81131301 0.866375249 0.838621832 0.81040883 0.915291939 0.893192084 0.844981028 0.847471896 342810420 chitinase Vibrio splendidus ATCC 33789 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 0.882343889 0.86238464 0.845833439 0.913050886 0.834672347 0.871895831 0.822999572 0.868128593 0.888748103 0.843209242 0.811662238 0.853409891 0.823812777 0.86523707 0.855275045 0.86018782 0.85242583 255319661 GAPDH_Calvin Acinetobacter radioresistens SK82 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 0.793255416 0.826830633 0.827850315 0.81834999 0.805230059 0.834714474 0.843817587 0.831835732 0.871454847 0.820270091 0.806984885 0.80895438 0.825832764 226908019 ppx Citrobacter sp. 30_2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 0.939447133 0.955394999 0.950899741 0.982680099 1.002928802 0.950116963 0.914690687 0.871764671 1.007285509 1.008257713 0.910397523 0.990569946 1.008052972 0.996600081 0.92681398 0.988868097 0.933343334 1.044137553 254488610 GAPDH_Calvin Roseobacter sp. GAI101 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.877420538 0.935949188 0.890339378 0.97920036 0.880672333 0.929651485 0.881512781 0.887522284 0.892419443 0.86735579 0.816149151 0.884749985 0.80402686 0.847852344 0.850990145 0.824994515 0.904494093 0.940370654 308057117 nasa Pantoea vagans C9-1 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 0.858021378 0.859164838 0.856373567 0.827243085 0.80605998 0.829447037 0.786955804 0.829340718 0.868237605 0.868086787 392101440 bphd Mycobacterium abscessus 5S-0817 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 0.817724617 0.841253197 0.840890539 0.886680846 0.861941125 0.86607683 0.842124263 0.864589434 0.791943861 0.805364557 0.845640198 0.840671252 21106440 vana Xanthomonas axonopodis pv. citri str. 306 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 1.289883035 1.273731682 1.230528017 1.27702694 1.231558053 1.270040578 1.219477955 1.244714153 1.236183684 1.237009508 1.236374625 1.263079311 1.231478133 1.214959301 1.212565315 1.239679308 1.279154552 1.227287588 73537515 vgb Ralstonia eutropha JMP134 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 0.811546964 0.834890924 0.809826124 0.862533251 0.792655351 0.839831486 0.839458106 356478533 cutinase Mycobacterium thermoresistibile ATCC 19527 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 1.027740328 1.035692332 0.949727106 1.000280802 0.93342093 0.993231565 0.971456351 0.996611621 0.967932672 1.016024833 0.92801493 0.948448067 0.923242376 0.988351919 0.92522302 0.922306732 1.01665262 1.040529572 189201571 alpha_galactosidase_fungi Pyrenophora tritici-repentis Pt-1C-BFP Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.930357385 0.853451748 0.92311245 0.903795586 0.9333957 0.880658409 0.868183903 0.84957858 0.896350312 0.822951159 0.830033855 0.835706193 0.856701106 0.836452578 0.826767785 0.924263784 0.912437583 83845876 ppx Sulfitobacter sp. EE-36 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 1.056995822 1.106931211 1.111619555 1.081921501 1.077588955 1.072381323 1.055614225 1.078654752 1.084534863 1.040307473 1.078266308 1.081269297 1.067376286 1.033056275 1.031469973 1.021218854 1.100739153 1.041351423 378594350 ppx Nocardia brasiliensis ATCC 700358 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 1.11246241 1.129830323 1.137673344 1.11924925 1.139687301 1.175246425 1.12987049 1.140226865 1.09112157 1.135058247 1.151462988 1.130882003 1.093264461 1.101561358 1.059028276 1.06884014 1.115061578 1.141357435 85696725 TIM Nitrobacter sp. Nb-311A Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 0.996913139 0.994743666 0.983448676 0.977236706 0.984342312 0.935783324 0.966046513 0.990599007 0.976844743 0.936164714 1.006279085 0.97429869 0.947023899 0.911316786 0.901796566 0.907326643 0.966061497 0.95741063 88702645 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.881846032 0.977071715 0.919883115 0.904716538 0.910768749 0.901049239 0.885289347 0.844728126 0.938893274 0.92085357 0.912802012 0.93209001 0.891128748 0.926556287 0.876969398 0.883351158 0.875469703 0.910471703 46448394 terc Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 0.891065865 0.922271872 0.899934423 0.974963609 0.96477313 0.913961151 0.934523536 0.882315387 0.89467885 0.952369151 0.962531005 0.932538049 0.925012572 0.893448047 0.886704934 0.912270048 0.914300018 0.934961402 84503025 TIM Oceanicola batsensis HTCC2597 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 1.243967396 1.221774256 1.202467001 1.219246226 1.185406691 1.209108732 1.195840187 1.195760937 1.196828348 1.176217659 1.199646862 1.201208208 1.172110554 1.161455543 1.179875957 1.205862233 1.225556418 1.192955218 253576978 ara Paenibacillus sp. oral taxon 786 str. D14 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 0.765521643 0.82843511 324114336 pme Escherichia fergusonii B253 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 1.049833534 1.018086163 0.96249919 1.026536544 1.041632291 1.02217079 0.989212901 0.972140139 1.007986499 0.98790858 0.983565048 1.009213139 0.992463275 1.014889904 0.955302664 0.987580648 1.038988697 1.016526758 145221680 amyA Mycobacterium gilvum PYR-GCK Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.856634735 0.942944338 0.873526693 0.840414333 0.928326896 0.886876117 0.844118367 0.813877914 0.918429952 0.898500012 0.927640836 0.841932716 0.843989682 0.852930052 0.810465347 0.918278317 25990802 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.125552747 1.089790068 1.085876311 1.118677544 1.07384821 1.071541645 1.056483164 1.039004944 1.105082471 1.065739026 1.080042903 1.088081396 1.018897882 1.059690646 1.019512655 1.022100879 1.0921193 1.123535824 377536448 terc Mobilicoccus pelagius NBRC 104925 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 1.300020412 1.266946251 1.270752745 1.257861208 1.246745036 1.255477763 1.260937632 1.248860755 1.263013804 1.204775581 1.264581222 1.246380893 1.19992276 1.192476603 1.16866168 1.213826973 1.271693166 1.247861275 302855502 mannanase Volvox carteri f. nagariensis Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 0.774099462 0.802699642 0.838705439 0.807857879 0.77255639 0.789715866 308212919 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 0.957969089 0.933472884 0.918428957 0.962811071 0.963740604 0.922945895 0.98725235 0.922208348 0.990135053 0.929445322 0.933802128 0.960587991 0.920713564 0.89333044 0.838115715 0.907283797 0.939079587 0.991831824 2627153 xylg Acinetobacter sp. YAA Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 0.935934771 0.944912083 0.905253469 0.967151187 0.845626512 0.946854903 0.901054339 0.941753789 0.926343827 0.949390773 0.886170439 0.895851034 0.862978329 0.891139507 0.827092656 0.865939332 0.888140408 0.925013359 227329543 cmci Pectobacterium carotovorum subsp. carotovorum WPP14 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 0.853829805 0.793738102 0.865869733 325964873 rgl Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 0.836110427 0.806977235 0.864208915 0.852496569 0.879010577 0.871220626 0.80818817 0.822739386 0.862325385 0.786908958 0.828248991 0.867181963 0.872088903 0.782565045 259502702 ppk Lactobacillus antri DSM 16041 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 1.354446738 1.331849938 1.356739698 1.328544696 1.327040143 1.367251737 1.296526669 1.317833615 1.332871833 1.347020527 1.333515733 1.339740678 1.314871813 1.305860172 1.335613666 1.310215537 1.35027922 1.333322811 295895043 sqr Mycobacterium parascrofulaceum ATCC BAA-614 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.273484982 1.304147499 1.253829433 1.265447399 1.255549992 1.294984712 1.239283399 1.225827697 1.242970504 1.2699677 1.260581214 1.281358111 1.235923002 1.246772839 1.223288333 1.245428698 1.253393937 1.26784151 255300300 AcnA Campylobacter showae RM3277 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 1.150199202 1.10073496 1.083768268 1.153394112 1.091845241 1.101178065 1.102086132 1.154175189 1.134084191 1.101720683 1.071443524 1.117611184 1.055370534 1.042851339 1.055217463 1.105300548 1.12616121 1.114445231 300718735 atza Erwinia billingiae Eb661 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 0.98802028 1.022484749 0.935304406 0.976900682 0.962095791 0.95727202 0.927940036 0.932099444 1.009328523 0.955604196 0.978002042 0.980331069 0.904636008 0.92438178 0.906627372 0.917715654 0.974209027 0.994726199 76056991 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.843966699 0.859155055 0.836970091 0.808480771 0.814651667 0.815422756 0.809229119 0.844609356 0.834579 0.809373437 0.810571102 0.792985962 0.851545986 324999045 rubisco Pseudonocardia sp. P1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 1.021639576 1.159240558 1.016626869 0.989497143 0.998733469 0.966603978 0.920877487 0.995662107 1.04883156 0.972563421 0.974455564 0.978559451 0.973055795 0.951101984 0.975732196 0.924126162 1.018199548 1.002157196 209401772 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.157983095 1.133932552 1.085547268 1.072631492 1.075690091 1.125195919 1.090206081 1.116597901 1.108067816 1.064608763 1.102386893 1.093495533 1.059173893 1.049658279 1.095884778 1.083615633 1.120894077 1.111394891 145228347 ara Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.92254833 0.982660776 0.984543564 0.955832487 0.962083354 0.957759203 0.893979097 0.881176353 0.926442099 0.905479544 0.87858715 0.947552492 0.913158473 0.884741159 0.857502466 0.91192777 0.939962128 0.954632107 148830818 linc Erythrobacter sp. SD-21 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 1.082837721 1.091456404 1.1009116 1.139386141 1.148341902 1.062107175 1.126313766 1.139049737 1.141787821 1.123801467 1.136560262 1.159527529 1.071141492 1.042924188 1.075081074 1.073527855 1.13692113 1.13258402 328922826 bphF1 gamma proteobacterium IMCC3088 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1.138505635 1.095132953 1.149664757 1.136925045 1.132032559 1.071479549 1.079568482 1.120180574 1.110644343 1.096442581 1.079854338 1.16605782 1.083213988 1.077908916 1.077798856 1.073448089 1.103177645 1.080847666 149913902 nhh Roseobacter sp. AzwK-3b Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 1.277356682 1.280350006 1.236642616 1.28170088 1.23592217 1.282452209 1.222532937 1.259251601 1.232085031 1.225571124 1.218894888 1.241654408 1.215967463 1.214404259 1.142375021 1.205920233 1.278421705 1.244692105 219996664 dsra Thioalkalivibrio sp. HL-EbGR7 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.873083443 0.946269947 0.883574019 0.904070393 0.90485334 0.832389946 0.873256206 0.878593804 0.882367449 0.910112749 0.898939119 0.88507342 0.927098652 0.929633612 0.83008212 0.872696589 0.956274176 0.899205004 27354399 SoxC Bradyrhizobium japonicum USDA 110 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 1.209770358 1.196403852 1.176401843 1.184603817 1.163674705 1.193962804 1.179386288 1.17565842 1.154688927 1.169863939 1.169729172 1.181632573 1.131195168 1.122285982 1.12787646 1.144863389 1.181721828 1.182960784 365879094 ppk Bradyrhizobium sp. ORS 375 Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.315984059 1.274404504 1.254677054 1.28604105 1.269592998 1.284097905 1.252453629 1.269201317 1.261017013 1.250769736 1.266683283 1.269013484 1.253211993 1.234187999 1.262768887 1.270787125 1.271491788 1.261437328 392848127 xyla Rhizobium leguminosarum bv. viciae USDA 2370 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 0.78725478 0.791716923 0.785202876 0.809678258 0.815075504 0.847038553 0.82548321 0.818749197 0.838134688 0.799930808 0.781148638 0.824477741 0.83416615 0.852131639 109452560 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.22542627 1.164530497 1.178760238 1.239089829 1.190550682 1.220323377 1.206379928 1.235531117 1.214762834 1.177607571 1.197760101 1.191547955 1.190981851 1.180320334 1.177210832 1.206191176 1.214109436 1.171128261 6594308 xylanase Penicillium sp. 40 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 0.888807653 0.939573869 0.89693175 0.899913444 0.87480488 0.899738408 0.906987751 0.85561104 0.902315488 0.9789292 0.889337317 0.886387747 0.878490238 0.85634563 0.861507304 0.847051505 0.874803406 0.916748022 4586274 one_ring_23diox Alcaligenes faecalis Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 0.890074804 1.033231778 0.900569944 1.02396762 1.087472143 1.000522608 0.869456625 0.904703347 1.101904811 1.123578555 0.963408055 1.013049449 1.197727335 1.132066735 0.941026312 0.857650134 0.905300801 288895441 pgk Allochromatium vinosum DSM 180 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 1.169888185 1.106995001 1.11762392 1.09493693 1.127129468 1.174196649 1.111223666 1.089863864 1.122443506 1.119073633 1.127945847 1.119576735 1.029911148 1.078655528 0.985951915 1.063446161 1.151026515 1.063771019 145236419 lactase_fungi Aspergillus niger Carbon Cycling Carbon degradation Lactose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 0.811543226 0.808739951 0.849965092 0.844087056 0.826184436 0.823884414 0.83410088 0.833810737 0.853279193 0.832838345 0.816714465 0.828389019 0.810014735 0.856702786 2808782 endochitinase Streptomyces coelicolor A3(2) Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 0.889079521 0.920696108 0.827359571 0.885352697 0.839764881 0.841119744 0.838915574 0.875122492 0.890097868 0.86584149 0.813298895 0.849063574 0.834819152 0.835030904 0.866005028 0.973769187 0.911843115 26278706 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.816829929 0.881429337 0.847380463 0.838490569 0.84385533 0.813105 0.834937495 0.897949964 393771237 arsc Novosphingobium sp. Rr 2-17 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.886980703 0.839634575 0.898914369 0.862928084 0.813611778 0.811371265 0.836771834 0.900265124 0.86292686 0.8435047 0.821301925 0.807118928 0.824369209 0.894913128 0.879116326 357008633 amie Paenibacillus elgii B69 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 0.794001872 0.791744185 389811933 ppx Rhodanobacter thiooxydans LCS2 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter thiooxydans; 0.979529685 0.975265417 0.960672693 0.967839832 0.935088052 0.962136679 0.927960086 0.945148519 0.959860604 0.95801767 0.973624328 0.972840432 0.949280159 0.951137942 0.907470273 0.965378925 0.966581237 0.975995304 408375074 linb Alcanivorax hongdengensis A-11-3 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax hongdengensis; 1.25639787 1.234481436 1.220746426 1.23528666 1.223340641 1.287772398 1.236645499 1.252689084 1.192770221 1.236016829 1.233929628 1.213067366 1.226318853 1.207126873 1.165886717 1.178387295 1.259244696 1.197000321 381380906 terc Rubrivivax gelatinosus IL144 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax gelatinosus; 0.865625814 0.861127971 0.833094328 0.856759027 0.828932552 0.82757665 0.848676244 0.80715743 0.838533889 0.843479437 0.868381466 0.84694647 357203825 RgaE Paenibacillus terrae HPL-003 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 1.068195502 1.10147034 1.080465513 1.12209607 1.112868325 1.097796714 1.118930898 1.10613384 1.08073413 1.111063121 1.109296286 1.105835476 1.067158138 1.093242627 1.031413628 1.082926747 1.056431636 1.079077815 116743242 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.879433565 0.94793289 0.819653399 0.899042974 0.809900944 0.871580744 0.840485796 0.843815792 0.910461091 0.891919157 0.832404902 0.828225322 0.805087736 0.853707786 0.902680134 0.940263675 34017100 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.94980121 0.800000988 0.895683869 0.908215708 0.880716221 0.907648528 0.79445599 0.917801634 0.867695107 0.900777399 0.927415925 0.789535337 0.819262897 26278814 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.896368324 0.861146127 0.858252931 0.856598359 0.797078896 0.851059182 0.861179011 0.825185153 0.857801024 0.851023128 0.830627969 0.889659587 0.819303916 0.855874942 0.819653945 0.847419727 0.88406485 410687260 proO Sphingobium fuliginis ATCC 27551 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium fuliginis; 0.930539795 0.918802247 0.933897264 0.925206831 0.877233236 0.928706825 0.898327278 0.944263018 0.947018957 0.927007717 0.913036458 0.877913878 0.888576664 0.872457385 0.832524503 0.850138064 0.90664143 0.937592653 190687091 GAPDH_Calvin Cellvibrio japonicus Ueda107 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 0.936363236 0.979817641 0.861871883 0.863517061 0.861982106 0.835068631 0.827846144 295106727 ppx Gordonibacter pamelaeae 7-10-1-b Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Gordonibacter;species:Gordonibacter pamelaeae; 1.157751899 1.172010158 1.138923923 1.133567656 1.132562543 1.17702113 1.144261598 1.130029407 1.13034797 1.13323624 1.146122632 1.135792323 1.083618464 1.088133528 1.003077411 1.093023602 1.093069633 1.081410519 239582633 phospholipase_B_fungi Zygosaccharomyces rouxii virulence degradation NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Zygosaccharomyces; 0.821956807 0.833172707 0.898523279 0.810921271 0.848916612 0.79937384 0.874960345 0.864500177 0.839407917 0.829507607 0.855581664 0.854782429 0.81709276 0.859008695 0.854418381 0.826172018 311229650 cysJ Frankia sp. EuI1c Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.192353794 1.21718047 1.172408842 1.204868111 1.187841293 1.219149052 1.158468194 1.171576406 1.175874568 1.194591789 1.16328422 1.178293196 1.188507412 1.169484595 1.147778335 1.179905141 1.209178357 1.19554405 45272475 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.977853863 0.87934598 0.945039042 0.977697909 0.918696972 0.908248575 0.92085779 0.941322905 0.989093724 0.989137427 0.945457613 0.979493507 0.921848333 0.88549203 0.898024385 0.924834672 0.993144925 0.95666502 13474199 xyla Mesorhizobium loti MAFF303099 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 1.11473684 1.144675579 1.159222024 1.116425986 1.07195607 1.128912212 1.076194366 1.112165063 1.142533186 1.115377887 1.132191277 1.128244149 1.091529051 1.106384228 1.033123137 1.111122824 1.099249458 1.152973944 334115805 Sir Acidithiobacillus ferrivorans SS3 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 0.977865671 0.912828439 0.879182778 0.972510996 0.836711473 0.957538595 0.885286246 0.964499145 0.944591665 0.927320776 0.888286005 0.941451883 0.876111061 0.903280619 0.829365754 0.861716326 0.939057566 0.949639686 307947146 acetylglucosaminidase Roseibium sp. TrichSKD4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 1.207991786 1.15868293 1.156041845 1.14874862 1.124817674 1.165122755 1.088211672 1.114924556 1.090805756 1.113981872 1.125606238 1.110086639 1.102808135 1.096152875 1.105005409 1.117810517 1.232015172 1.134255982 256392879 amyA Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.159005994 1.146794672 1.18429602 1.183496561 1.146670346 1.191244451 1.151460719 1.178804201 1.17416637 1.16561527 1.152970406 1.176359895 1.10831663 1.140130618 1.137830156 1.134478596 1.19060349 1.152146512 325660425 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.906535401 0.892535534 0.894685577 0.90770042 0.912179846 0.826339157 0.861827886 0.84524665 0.917093568 0.886511722 0.862762385 0.930181215 0.874343559 0.864689034 0.906486687 0.914713674 0.858985481 336180146 poba Frankia symbiont of Datisca glomerata Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.996251514 1.039666304 0.999227665 0.999822778 1.008285968 1.018229418 0.988802753 0.960766372 0.954814733 0.997973566 0.992766939 1.024116283 0.978216305 0.998146368 0.957765182 0.989332809 1.004394402 1.018213705 40362783 nosz uncultured soil bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.777928359 0.837575943 289185211 pula Clostridiales genomosp. BVAB3 str. UPII9-5 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Clostridiales genomosp. BVAB3; 1.070381438 1.057623574 1.062072826 1.063468754 1.080242349 1.053425361 1.026858284 0.980998227 1.029013865 1.028905314 1.02414535 1.008224558 1.012785407 0.997491443 0.950643752 0.974323065 1.073696602 1.053752648 295977453 acetylglucosaminidase Gluconacetobacter hansenii ATCC 23769 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 0.867534174 0.868027312 0.809686872 0.848427898 0.814440433 0.855216961 0.83483101 0.861349056 0.846926449 0.8537304 0.890356228 171060286 ppx Leptothrix cholodnii SP-6 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 1.298001857 1.30153963 1.244010772 1.261930777 1.240967556 1.308331817 1.239368262 1.26826432 1.245181086 1.256564475 1.228841665 1.248692991 1.225226548 1.241325287 1.217664577 1.274482559 1.27114752 1.289154884 148628300 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.787483166 0.855150658 0.845417488 0.816367613 0.85016969 0.841790678 0.918911789 0.818084324 0.848745398 22255726 nifh Mesorhizobium sp. 128a Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 0.974601984 0.990282763 1.013456772 1.019212396 0.961267002 0.983816313 0.987350721 1.003161056 0.900441971 0.968699912 0.985711059 0.964656123 0.950299268 0.921465588 0.941003012 0.944823667 1.006158299 0.976671784 13423939 vdh Caulobacter crescentus CB15 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 1.011326186 0.99812337 0.986340252 0.931452716 0.904130784 0.96399604 0.930124901 0.942124159 0.98413325 0.979143136 0.931813797 0.935800955 0.955004662 0.943650694 0.927343896 0.90226062 1.003007534 1.045085376 218267437 atza Clostridium hylemonae DSM 15053 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 0.892697744 0.864752417 0.921613205 0.902171392 0.892281008 0.876110062 0.879178031 0.897933921 0.902062815 0.907179672 0.883378872 0.888091268 0.930305375 0.887021134 0.942264453 0.882289349 0.94888004 0.940598113 261208528 dehh109 Paracoccus sp. DEH99 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 1.075266079 1.055589053 1.029632275 1.049542666 1.02420349 1.035639371 1.006186909 1.067443001 1.047825994 1.059620263 1.034736847 1.085441267 1.003758715 1.049617493 0.97032988 0.997528372 1.031418965 1.037921989 399990254 bphd Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.995994421 0.827865164 0.789198608 0.843054277 46307904 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.903877633 0.7836351 0.861729496 0.82556993 0.841857459 0.821284045 0.836443829 0.855473149 0.823783196 0.78449589 0.836023209 0.813490746 0.811994602 336430237 cda Lachnospiraceae bacterium 3_1_57FAA_CT1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 0.810877718 0.837160523 0.828217458 0.817761961 0.798034816 0.774948352 160936847 ppx Clostridium bolteae ATCC BAA-613 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 0.831229492 0.877056277 0.882529038 0.92345245 0.871919268 0.913818909 0.870213396 0.817391034 0.869383338 0.804724784 0.827169556 0.833928215 0.86463313 0.843276601 0.79710903 0.877728841 0.831457085 85080647 exoglucanase Neurospora crassa OR74A Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 0.811024088 0.82097623 0.83813432 0.842256784 0.82405356 0.851836569 0.850627445 0.841407598 0.806146096 0.852543384 0.861157942 0.828521019 154695750 protease_aspartate_fungi Sclerotinia sclerotiorum 1980 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 0.841172698 0.925399097 0.894258263 0.974852508 0.960446458 0.864151503 0.896798302 0.860407116 0.907194114 0.908853981 0.901755872 0.898994817 0.915280549 0.871358156 0.84877065 0.914186315 0.831886551 0.86548909 77920456 nrfa Pelobacter carbinolicus DSM 2380 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 0.996077885 0.990610463 1.000561855 0.97990105 0.960475252 1.018046901 0.99930471 0.973271055 0.960108868 0.987472736 0.960020687 0.978156445 0.964226401 0.93281875 0.973544959 0.938847165 0.979537794 161379828 SoxC Oceanibulbus indolifex HEL-45 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.949431411 0.924512818 0.896718623 0.913733618 0.920196011 0.906870154 0.839361313 0.867920401 0.941733154 0.913871211 0.863680412 0.971311066 0.858424487 0.879474171 0.847770521 0.884716143 0.950024682 0.920288993 184192923 pchcf Burkholderia phymatum STM815 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 1.158689031 1.142666808 1.083355001 1.090142416 1.195799292 1.090994526 1.057832833 1.082410026 1.124361744 1.075732097 1.056044218 1.091703133 1.052404554 1.048734581 1.032584994 1.084534185 1.107284767 1.106874128 296264346 tktA Roseomonas cervicalis ATCC 49957 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 1.033160561 1.008197609 1.022288047 1.006824715 1.000125734 1.018010209 0.972062896 1.00015634 1.044148945 0.937272196 0.996033827 0.996396413 0.929806762 0.945137092 0.937198487 0.970905261 0.988441882 0.948349591 154155295 cysI Parvibaculum lavamentivorans DS-1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 1.07491448 1.039835176 1.074234507 1.062179577 1.081194837 1.090355969 1.080411595 1.078652874 1.062017505 1.052516391 1.046244053 1.058012515 1.041457803 0.996413432 1.01817348 1.013592662 1.055648948 1.039363349 12667670 dsra uncultured sulfate-reducing bacterium UMTRAdsr648-20 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.955641686 0.862994352 0.945541639 0.945534097 0.856768173 0.834376321 0.871450839 0.931653172 0.936277137 0.884947806 0.895403758 0.927885114 0.898972084 0.862960778 0.856606247 0.893907999 0.926793033 0.876085628 223029707 hsp90_Stramenopiles Glossomastix chrysoplasta Other Phylogenetic NA superkingdom:Eukaryota;phylum:Pinguiophyceae;order:Pinguiochrysidales;family:Pinguiochrysidaceae;genus:Glossomastix; 0.946633567 0.913266601 0.928628867 0.950152433 0.897351147 0.910676949 0.905720304 0.908480878 0.980267405 0.959169227 0.973986269 0.929261621 0.935074255 0.942022141 0.885483847 0.904086223 0.933098937 0.925382821 378803704 phdk Mycobacterium intracellulare MOTT-02 Organic Remediation Polycyclic aromatics NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 0.972446533 0.980736623 0.987267202 0.993694654 0.95472654 0.952916309 0.947106613 1.103131813 0.990474063 0.976140944 0.982325274 1.002995554 0.95612558 0.978851453 0.912568001 0.953268879 0.977804145 0.959967603 325261101 b_lactamase Clostridium sp. D5 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 1.00690162 1.038385112 1.006481262 1.019095127 1.053073621 1.033129036 1.009521903 1.010108623 1.017317849 1.002973687 0.988608665 1.008831018 1.004518095 1.00964365 1.04507928 1.035660842 1.05502438 1.037959799 87282704 FBPase Synechococcus sp. WH 5701 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.885888779 0.909463304 0.822465182 0.925917022 0.86011921 0.882351622 0.853205047 0.860112501 0.862610589 0.906397624 0.871181038 0.876048348 0.86867609 0.839704772 34017202 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.769596533 0.866148342 0.820942973 0.830308406 0.860687849 0.836752504 0.817740493 0.8205059 0.804414912 0.831406554 161167869 aln Sorangium cellulosum 'So ce 56' Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.161004601 1.094516635 1.077217007 1.136874056 1.146553564 1.09886501 1.088994642 1.128830591 1.166743328 1.111989642 1.104645208 1.153434361 1.100946195 1.056288217 1.052742145 1.1035698 1.106317466 1.083241025 365844513 CsoS1_CcmK Flavonifractor plautii ATCC 29863 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Flavonifractor plautii; 1.097223627 1.054458915 1.033788477 1.057762736 1.095700933 1.085985999 1.031510217 1.209827978 1.038919865 1.01694318 1.035327311 1.090448838 1.034741762 1.021475221 1.043685317 1.036257106 1.072037916 1.032684601 87284694 amyA Synechococcus sp. WH 5701 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.920796601 0.931228244 0.942945263 0.963237256 0.856754521 0.921296191 0.86118681 0.921969098 0.907067832 0.907809605 0.907030166 0.894862123 0.891652304 0.919868893 0.860968432 0.882439867 0.938408096 0.888924944 188520791 nbac Xanthomonas oryzae pv. oryzae PXO99A Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 1.030374074 1.013893921 0.991222392 1.022185612 1.000863364 1.005751842 0.98007521 0.990803886 0.977274712 1.016067792 1.000870494 1.017822656 0.968317078 0.953840407 0.949063088 0.986086099 1.026271756 1.021813838 383702536 cysI Rheinheimera nanhaiensis E407-8 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 1.038701621 0.915405383 0.886314725 0.90520373 0.927466639 0.927378354 0.895686054 0.972150621 0.932444949 0.87510483 0.891034439 0.88758265 0.876610147 0.943725941 0.862939945 0.901628325 0.883810162 0.958823148 167842053 FBP_aldolase Burkholderia thailandensis MSMB43 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 0.934086463 0.922423671 0.818615043 0.872419409 0.887720788 0.912997685 0.837932448 0.887488996 0.891903921 0.861475636 0.908715694 0.839188785 0.862022126 0.869136531 0.89092325 0.880002558 167651849 fthfs Anaerostipes caccae DSM 14662 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 0.80257307 0.807533885 0.837586667 0.804512374 0.833190116 0.81958469 146396053 arra Geobacter uraniireducens Rf4 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 1.002771358 1.031576628 0.937989086 1.040754735 0.977195587 0.983514013 0.914509965 0.975597901 1.033870376 0.927075956 0.915468292 0.983497531 0.950794268 0.915042742 0.922188441 0.920924932 1.022322061 0.997170705 88643126 dsrB uncultured prokaryote Sulfur sulfite reduction NA 1.002551511 0.878920981 0.957240749 0.953249305 1.025088537 1.003870043 0.965309472 0.829470576 0.96930868 0.92676276 0.963587819 0.985195118 0.990219902 1.02598868 0.938832883 0.990556782 0.948098764 52081406 pectinase (pectate_lyase) Bacillus licheniformis ATCC 14580 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 0.887213097 0.872063549 0.851170678 0.922343868 0.86482304 0.799670869 0.863956085 0.85665322 0.909782624 0.849215747 0.869931756 0.87036376 0.815535926 0.796456585 0.8139126 0.911893486 0.82013396 300785821 endoglucanase Amycolatopsis mediterranei U32 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 0.976873209 0.972996773 0.965924496 0.96719339 0.916161435 0.947847791 0.94581823 0.934406061 0.922827386 0.906239735 0.937599717 0.964012962 0.919840069 0.932602618 0.90706823 0.918571625 0.944871973 0.935420059 297630086 arsc Xenorhabdus nematophila ATCC 19061 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 1.208444912 1.13769721 1.164981995 1.193406342 1.182818813 1.17344503 1.183567881 1.212250406 1.167328213 1.138985886 1.17647334 1.173072603 1.171054816 1.106251448 1.101650204 1.127777935 1.199313207 1.116766948 151422300 frdA_rTCA Nitratiruptor sp. SB155-2 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 1.008937419 0.960475466 0.999964765 0.983695256 1.02512245 1.019979183 1.039618037 1.005159701 1.008205687 1.005162518 1.019178438 0.984509207 1.016167048 0.984253882 0.949531452 0.958726709 1.011486931 0.987093886 71395672 one_ring_23diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.770982713 0.800583348 0.750960942 0.797551429 396926125 onr Rhodococcus sp. JVH1 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.980171934 0.976461251 0.938487842 1.033222746 0.905865886 0.96534726 0.888630763 0.915980487 0.963466368 0.961146906 0.935087537 0.92678199 0.86150235 0.968630897 0.912144876 0.91726768 0.979352361 1.019863028 56708985 hao Silicibacter pomeroyi DSS-3 Nitrogen Nitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.786727773 0.808918969 0.841538544 0.818390035 0.816096033 0.800271038 0.830462161 0.797391094 0.818717268 83953700 FBP_aldolase Sulfitobacter sp. NAS-14.1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 0.892803096 0.781708342 145223764 cutinase Mycobacterium gilvum PYR-GCK Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.91043551 0.873086008 0.878709042 0.963090729 0.855988567 0.867411598 0.855860694 1.006970926 0.914324335 0.889446906 0.876509502 0.906163828 0.865072276 0.844331716 0.862489958 0.87810555 0.892587579 0.858468982 157084650 cueo Citrobacter koseri ATCC BAA-895 Metal Homeostasis Copper Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 0.799658545 0.8405987 0.856766627 0.850289407 0.822738024 0.804810641 0.84452902 0.81408619 0.796634654 0.839023009 0.824762729 0.83405107 0.813624134 0.83962024 0.848048537 0.828495213 0.848215538 218659620 catechol Rhizobium etli IE4771 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 1.258778391 1.206809852 1.207008493 1.234213283 1.203675886 1.244593359 1.19626919 1.220157116 1.22026346 1.214272196 1.209259673 1.216100211 1.185784291 1.201034315 1.187526666 1.22141784 1.24371947 1.209309699 109455731 vana Roseobacter denitrificans OCh 114 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 1.043995043 1.118759725 1.019976742 1.010966376 1.043246854 1.153695149 1.001371423 0.983280956 1.021855663 1.060767666 1.091272879 1.046158623 0.960263786 0.98842531 0.929532914 1.022081287 1.148345389 1.078314304 332377316 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria; 1.120118115 1.056267413 1.067654258 1.177489944 1.059283306 1.090466175 1.06039904 1.109416065 1.093410528 1.067355171 1.075704877 1.092161093 1.04087881 1.028031298 1.011493383 1.043071648 1.087656446 1.032908211 381160122 arylest Thiorhodovibrio sp. 970 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 1.077031611 1.017673576 1.059392714 0.99223962 1.025612625 0.977420961 0.993976115 0.982765092 1.039739864 1.077623615 1.146689701 1.034169744 1.054003883 0.992619329 1.027045764 0.971339649 1.064586138 1.108231218 312963550 alginase Pseudomonas fluorescens WH6 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 0.891675525 0.926920493 0.818133855 0.904056168 0.886816515 0.865711968 0.86369272 0.826338907 0.871884521 0.940401993 0.861523993 0.793576512 0.939343535 0.849622037 0.883916739 0.896325152 0.88014934 0.942144154 297565727 terc Meiothermus silvanus DSM 9946 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 0.99218848 1.007563901 0.930875865 0.980717163 0.89163943 1.037699358 0.949352689 0.938342352 0.96263418 1.015670456 0.929087005 0.952983217 0.864011094 1.089542046 0.867276909 0.951966281 1.094888947 1.021970978 110816769 tehb Rhodococcus jostii RHA1 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.107209916 1.08950677 1.094423098 1.06241676 1.091448949 1.101299322 1.113526733 1.151266547 1.14594177 1.116087053 1.050956998 1.096685961 1.09844099 1.162963349 1.027596841 1.106834112 1.072221892 1.102477057 168199245 SoxA Methylobacterium sp. 4-46 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 1.204260673 1.193303088 1.194125206 1.219472344 1.209912626 1.19190787 1.19704135 1.211527269 1.199416141 1.191599757 1.174143081 1.169690019 1.169611725 1.121097271 1.1281548 1.152743012 1.177495765 1.180849413 71383772 nasa Synechococcus sp. UW179 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.785204425 0.793553795 0.830554346 0.854830367 407305380 linb Nocardia brasiliensis ATCC 700358 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 0.843419959 0.856235714 0.841613526 0.896019767 0.881455307 0.809523317 0.834877692 0.87772808 0.862196847 0.865054748 0.827556992 0.878784988 0.842014731 0.833151762 0.843546338 0.85158932 0.872949571 210631468 cellobiase Collinsella stercoris DSM 13279 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 0.992419211 0.970523217 0.95074592 0.986054673 0.891895697 0.961760379 0.885625282 0.955480068 0.958372815 1.077040932 0.928359851 0.911926512 0.878095782 0.915304777 0.840879707 0.91520453 1.054340937 0.959451712 298247386 mer Ktedonobacter racemifer DSM 44963 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 0.828882807 0.831096559 0.812375746 0.767033876 0.83937541 0.78768157 0.828110384 0.819345377 0.934355036 0.861955869 0.888195112 334117336 cda Microcoleus vaginatus FGP-2 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 0.887339189 0.818409693 0.831484064 0.928034682 0.859704986 0.804654191 0.910788795 0.878922195 0.914829544 0.863554623 0.907614414 0.905607565 0.796700656 0.834945935 0.814958299 0.911129047 182415523 mannanase Opitutus terrae PB90-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 0.982416553 1.027607135 0.971407909 0.977181663 0.965416968 0.972561227 0.938300082 1.022067907 0.958557401 0.968836184 0.944082108 0.99244826 0.949231489 0.954175524 0.990064221 0.952842431 0.996565089 0.985656959 147886176 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.174871833 1.129076751 1.107908876 1.168009191 1.153043073 1.125329389 1.178574307 1.145452675 1.145746639 1.108583397 1.098668197 1.123974183 1.172696617 1.083600774 1.073940095 1.109999919 1.150143172 1.12091624 400331435 linb Mycobacterium colombiense CECT 3035 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 0.904134435 0.830442253 0.858441705 0.791994714 0.807960849 0.833043306 315924281 amyA Pseudoramibacter alactolyticus ATCC 23263 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Pseudoramibacter;species:Pseudoramibacter alactolyticus; 0.958220191 0.900671881 0.922926054 1.006228746 0.932213851 0.911501979 0.921722358 0.915955291 0.890154748 0.90709048 0.910333913 0.905544127 0.867021821 0.926581757 0.964038957 0.861199536 0.918862866 0.915049388 295674267 protease_serine_fungi Paracoccidioides brasiliensis Pb01 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 1.22399301 1.149998238 1.160334126 1.203849454 1.152083229 1.176350204 1.122504627 1.17933882 1.193476988 1.169808843 1.164118616 1.182224876 1.136262339 1.158823542 1.130929553 1.172113343 1.211883352 1.140276596 311218364 nhh Rhodomicrobium vannielii ATCC 17100 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 1.144839611 1.09391493 1.090942748 1.163796377 1.097472313 1.127263059 1.104601872 1.134500558 1.120171523 1.098369033 1.109008308 1.146850287 1.086976489 1.080426476 1.086872527 1.106611807 1.140099019 1.086009586 161167819 fosa Sorangium cellulosum 'So ce 56' Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1.313849852 1.265573946 1.238942096 1.246031557 1.221948194 1.287128326 1.231739196 1.250414083 1.257619623 1.241174808 1.233533086 1.242790074 1.218825995 1.238979831 1.22528814 1.257909768 1.272310177 1.251502213 126237864 amyA Mycobacterium sp. JLS Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.910037307 0.816819106 0.844537845 0.826089721 0.848790562 0.89995331 0.828441562 0.892449702 0.869525399 0.836090953 0.848221755 0.841812484 0.866735356 255502879 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.135924407 1.14016591 1.133821853 1.104461045 1.083730611 1.098973442 1.050557534 1.100364481 1.107920974 1.134359577 1.095999157 1.162631569 1.092405823 1.078964497 1.07749235 1.070044853 1.142507522 1.134165078 336321017 xylanase Cellvibrio] gilvus ATCC 13127 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 0.839209367 0.87813752 0.823006445 0.877548705 0.872367187 0.861909174 0.873034274 0.815546079 0.843768326 0.849566356 0.866848661 0.813102894 0.846039158 0.823540623 169863180 phospholipase_D_fungi Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Phospholipids superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.863072958 0.843350635 0.890619549 0.839934188 0.821375955 0.91254673 0.848606767 0.866500518 0.880586233 0.831122524 0.873282938 0.890415006 0.802679854 0.838181522 0.965865396 0.874883119 0.825203494 164455740 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 0.862935369 0.858771402 0.872755235 0.866430133 0.80022064 0.816112176 0.870638895 0.875968189 0.903762636 0.872165349 0.813782997 0.877841334 0.877708885 358238144 cutinase Gordonia amarae NBRC 15530 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 1.399138457 1.343420329 1.338466353 1.354019782 1.334296297 1.395876722 1.295289186 1.354966453 1.331497277 1.329431475 1.331371003 1.34049677 1.315676932 1.319148826 1.314729902 1.351842053 1.370407916 1.323278269 91977216 nhh Rhodopseudomonas palustris BisB5 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1.05806496 1.056878081 0.997009278 1.049755855 0.973483704 1.036562272 0.965474086 0.975618749 1.025187463 1.024043743 0.971288252 1.012325252 0.952597308 0.982195589 0.955174682 1.026229339 1.060374146 1.041649338 112462225 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.796629732 0.868175402 0.83955906 0.860811553 0.817311804 0.865043818 0.86997985 0.79233868 0.806076592 0.889408789 0.785988399 146308720 atzb Pseudomonas mendocina ymp Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 0.867885654 0.868187767 0.866371074 0.864342667 0.839381457 0.891063636 0.876750745 0.83341864 0.852021201 0.868259353 0.896799415 371445215 mcra uncultured Methanosaeta sp. Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta; 0.954299928 0.949900557 0.946226152 0.948940016 0.927187018 0.996593405 0.926816416 0.922898603 0.965706533 0.976965032 0.911683245 0.931516609 0.933454808 0.952334463 0.911114529 0.943741599 0.991065192 0.969821079 91700830 bphF1 Polaromonas sp. JS666 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 0.78237557 0.78940425 0.814532839 0.811216287 0.800215277 0.828056997 0.786619912 0.775330983 0.851463549 169610375 pec_Cdeg Phaeosphaeria nodorum SN15 Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 0.885235476 0.881730357 0.87257414 0.833392375 0.863081288 0.846744723 0.814968744 0.876189486 0.847138475 0.828632238 0.856057871 0.842056769 0.841884577 0.865758611 0.885520212 0.881902176 184192113 ppx Burkholderia phymatum STM815 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 0.874912095 0.792017748 0.793425298 0.786196972 0.867232453 0.800312494 0.810143229 0.782228543 0.850861097 116266942 amyA Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1.126096434 1.139438798 1.118180721 1.10331816 1.075936889 1.128783536 1.095351813 1.09710895 1.08735129 1.115591764 1.104207373 1.108402371 1.089899232 1.066862679 1.091617987 1.080514861 1.123960373 1.146344958 268608189 xylanase Ruminococcus flavefaciens FD-1 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 0.822331286 0.790527413 0.87811668 0.825922899 0.794337532 0.819858385 0.930523873 357044834 rgh Paraprevotella clara YIT 11840 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 1.181246051 1.170639713 1.170749396 1.185101662 1.165968942 1.195476413 1.170434091 1.142584769 1.171360772 1.187934572 1.147061338 1.168362334 1.127943632 1.192910168 1.10470361 1.154482956 1.155348057 1.1345068 316948377 acetylglucosaminidase Pantoea sp. At-9b Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.784924348 0.846523131 0.836446071 0.828275133 0.790443739 0.85490654 0.824557237 403197193 linb Gordonia rubripertincta NBRC 101908 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 0.832224924 0.83425517 0.863841173 0.835949296 0.840538407 0.829533942 292654689 RgaE Haloferax volcanii DS2 Carbon Cycling Carbon degradation Pectin superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 0.939275321 0.934960272 0.930838366 0.947556486 0.93847153 0.971823149 0.942473177 0.954484557 0.934658527 0.951856251 0.92896156 0.961264586 1.013375396 0.90617587 0.881315398 0.932168544 0.958960364 0.964704384 118007278 alkb Pseudomonas mendocina ymp Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 1.019517216 1.010409962 0.949207648 0.971248861 0.923401374 1.022847026 0.917725452 0.973911531 0.974218831 0.996730839 0.95057718 0.943541139 0.991441533 1.004669274 0.912778237 0.992955995 1.017143691 1.009967544 343804628 rubisco Marichromatium purpuratum 984 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 0.770700461 0.885122893 0.86717391 0.811562717 389872731 exaa(moxf) Advenella kashmirensis WT001 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 1.023711341 1.00051133 1.012161905 1.050498123 1.012605305 0.979397028 0.964948713 1.02406455 1.008395568 0.989260088 1.00004484 1.056421577 0.97681465 0.956799952 0.977316378 0.998602057 1.03280836 0.982883435 308737275 tfda uncultured bacterium Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria; 0.913051851 1.063956896 0.882873222 0.950152788 0.917622465 0.907126034 0.926765274 0.921224174 0.926572478 0.864529702 0.877063213 0.920319126 0.870319438 0.900120273 0.841928257 0.868903741 0.935843196 0.89646405 219848236 mch Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.999929679 1.019212203 0.981568217 1.021160709 1.018818959 1.087634961 0.975914974 0.998116962 1.027183255 1.00664402 0.992728242 1.029943951 0.977321427 1.003751386 1.001888079 1.008458483 1.051203107 1.028696605 70930926 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.117915307 1.108249533 1.084476782 1.059429718 1.065241268 1.158895596 1.074381333 1.124416837 1.110539725 1.107651756 1.069196398 1.073195712 1.078474182 1.11681721 1.101817124 1.090436148 1.090898796 1.151210942 29160313 exoglucanase Verticillium tenerum Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Verticillium; 0.858717665 0.918752221 0.836585883 0.864425339 0.875410083 0.913969106 0.935164522 0.921715196 0.908341999 0.85565998 0.904365919 0.883058852 0.839575302 0.936403725 351729494 xylc Acidovorax radicis N35 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 0.974683547 0.905100967 0.922451939 0.995476525 0.931214602 0.948493792 0.942356294 0.955816463 0.961791095 0.91188627 0.937790209 0.962435328 0.908996835 0.918029503 1.007258586 0.924069587 0.961186736 0.901490864 120592900 vdh Polaromonas naphthalenivorans CJ2 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1.052990223 1.062657042 1.005354911 1.028474279 0.963686655 1.036471417 0.997893479 1.071530185 1.028951337 1.03522585 0.953888842 0.99202411 0.919693406 0.965786134 0.837678973 0.96978505 1.025055621 1.045358247 18535634 endoglucanase Pseudomonas fluorescens Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.977875157 0.987659288 0.983419162 0.988282265 0.985645905 0.998939888 0.989812658 0.993848657 0.980898348 0.98926449 0.99483395 0.984145243 0.971034099 0.963059179 0.954933508 0.975639131 0.991115359 0.99109156 380086169 terc Sordaria macrospora k-hell Metal Homeostasis Tellurium Detoxification superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria;species:Sordaria macrospora; 0.834176814 0.865908938 0.853105082 0.871817336 0.816642752 0.824506956 0.825580909 0.87639065 0.848400412 148498945 nitrilase Sphingomonas wittichii RW1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.264669619 1.249641088 1.229748525 1.260002579 1.243494845 1.25845369 1.232819397 1.244003092 1.251631342 1.240437745 1.214909546 1.238094736 1.212942638 1.227191635 1.234950598 1.229639706 1.266550897 1.214600254 386420628 ppx Thiothrix nivea DSM 5205 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 1.006522481 0.959775213 0.96534927 1.011210793 0.981263519 0.980300028 1.012538742 0.986773133 1.110563164 1.004280879 1.008653287 0.989101509 0.985398125 0.921435322 0.962162392 0.952443672 0.979771649 0.982331779 161387290 pcag Phaeobacter gallaeciensis BS107 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 1.080511895 1.074301434 1.065891383 1.037980578 1.081776843 1.088781884 1.098152201 1.103307741 1.061828505 1.059707288 1.081607715 1.057918723 1.081382646 1.009768102 0.952609 1.007889219 1.064532918 1.050392779 399909656 mdlc Halomonas sp. KM-1 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 1.192034981 1.146363004 1.136930878 1.216331397 1.12392567 1.16002642 1.140757463 1.106278628 1.155962605 1.145594814 1.150480221 1.174293197 1.128663552 1.12405673 1.078064767 1.125189662 1.18460106 1.145141422 151361342 phytase Kineococcus radiotolerans SRS30216 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 1.05056424 1.07870829 1.03348156 1.026234561 1.017612406 1.025998085 1.006866586 0.996292243 1.047989227 1.039500586 1.041131253 1.01500595 0.994465957 1.002320191 0.985381744 1.00428257 1.053665008 1.043491083 148257564 amyA Bradyrhizobium sp. BTAi1 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.834069 0.783835849 0.83799002 0.80015923 0.786873055 162147323 alkj Gluconacetobacter diazotrophicus PAl 5 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 1.350751476 1.316932519 1.345805516 1.371060771 1.33529658 1.314367164 1.366788437 1.38463058 1.363216251 1.317319746 1.337548539 1.368972317 1.302651042 1.274396921 1.315974984 1.300371476 1.322947508 1.283475035 145574544 GAPDH_Calvin Pseudomonas mendocina ymp Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 0.8721946 0.87496744 0.883596281 0.809603847 0.842663883 0.883664989 0.812908743 0.836778115 0.892211732 0.936467321 0.890637653 0.828904934 0.818553552 0.878497241 0.818429864 0.819640693 0.880591568 0.917151175 318062697 ppx Streptomyces sp. SA3_actG Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1.075008862 1.061998078 1.04445497 1.086573188 1.067972736 1.030338602 1.063642255 1.060904498 1.06844575 1.044295689 1.085009285 1.069895745 1.035344756 1.024921778 0.988186201 1.012145841 1.048054311 1.061382718 50950572 amyA Leifsonia xyli subsp. xyli str. CTCB07 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 0.887868529 0.869764721 0.890484057 0.87640788 0.900928937 0.956960606 0.916813552 0.888104386 0.884616308 0.89494478 0.836387209 0.898622148 0.898704923 0.884135997 0.831054583 0.8431228 0.908959309 0.944708639 6681581 acetylglucosaminidase Streptomyces thermoviolaceus Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.928590585 0.950893855 0.908651277 0.905323775 0.938390067 0.970334078 0.913533334 0.88937969 0.916766798 0.910297291 0.913877434 0.92369605 0.89937824 0.934944881 0.927628764 0.929664903 0.944742896 0.957501791 9622538 bbs Thauera aromatica Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 1.197880912 1.188089596 1.124283418 1.146367945 1.12615006 1.177625667 1.140628753 1.16321068 1.147902564 1.168347694 1.12290573 1.137580288 1.091908919 1.134381302 1.061056985 1.141955436 1.183546091 1.190367906 77969955 chnb Burkholderia sp. 383 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.929959236 0.939065495 0.902615989 0.926808879 0.894333786 0.901381501 0.892789471 0.896802055 0.918681691 0.894771444 0.910563009 0.899441736 0.880053097 0.903945827 0.899210166 0.890860829 0.945586816 0.944965699 374336684 pcag Oceanimonas sp. GK1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 0.919283603 0.893759209 0.927903335 0.935255498 0.911586799 0.917055116 0.901829818 0.914226054 0.912661489 0.937575916 0.908219697 0.946793092 0.864319142 0.859183194 0.816261166 0.831497953 0.876070237 0.834732645 153962712 sqr uncultured bacterium Sulfur Sulfide Oxidation NA superkingdom:Bacteria; 0.794448711 0.918824894 0.799999819 0.81619847 0.830722857 0.852150711 228618663 merb Bacillus cereus R309803 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 0.92718412 0.896472245 0.940095617 0.93905067 0.921527861 0.932106367 0.942165224 0.944853553 0.939223501 0.906708634 0.871969884 0.907631255 0.909174193 0.933635551 0.906367655 0.88279321 0.914547646 0.944551136 156742878 accD Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 0.943679704 0.995391196 0.972639932 1.006981683 1.002443388 0.954407394 0.958033514 0.961581289 0.971357066 0.977447174 0.919880301 0.970443081 0.935297636 0.916023131 0.849554167 0.895350378 0.953274126 0.97734998 336314710 pgk Rheinheimera sp. A13L Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 0.993789239 0.974562305 0.988107573 0.975986858 0.984668109 0.961129067 0.938817133 0.969215689 1.000088932 0.944457783 0.940289729 0.96626272 0.958105775 0.928473931 0.913064707 0.935506825 0.980451363 1.01729317 167594237 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 1.088036964 1.077678985 1.067535548 1.072525529 1.089916852 1.106340732 1.087127794 1.072221419 1.068851931 1.087649065 1.077701811 1.073710435 1.080215785 1.028826191 0.991077729 1.038505207 1.084547811 1.094469706 386822692 amyA Serratia plymuthica PRI-2C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 0.786986348 0.790862717 161380292 FBP_aldolase Oceanibulbus indolifex HEL-45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.824014553 0.853087479 0.83233743 0.825284184 0.876199133 0.869930535 0.829001891 0.821368357 0.837967096 0.831084625 0.817145629 0.82022942 76058170 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.961610774 0.938120803 0.880054564 1.004731551 0.885595812 0.941984268 0.939783639 0.973800348 0.951157969 0.929596755 1.089674142 0.965642519 0.863826846 0.923533917 0.951699538 0.916294503 0.969589593 0.941648967 297202069 chitinase Streptomyces sviceus ATCC 29083 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 1.212790656 1.228483175 1.201773607 1.235371787 1.205598857 1.179294287 1.189662889 1.187183918 1.200863785 1.20506257 1.184843378 1.212276046 1.159817403 1.159782303 1.125600316 1.151777157 1.194699124 1.185561255 256395125 chitinase Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.092275353 1.069703413 1.055570463 1.048822443 1.069302027 1.097886302 1.092241931 1.058430572 1.011658876 1.0776547 1.016879833 1.038472896 1.070408036 1.069858107 1.225972996 1.072667693 1.045902303 1.095780776 84663555 dsrB sulfate-reducing bacterium AR1104 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 0.9334409 0.916746533 0.934056209 0.919549865 0.90741945 0.869257361 0.882085645 0.911456901 0.933858989 0.922547904 0.892843241 0.905190756 0.860951814 0.847284243 0.81926367 0.854659632 0.959169116 0.900585092 77390477 arsc Rhodobacter sphaeroides 2.4.1 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 0.78504366 0.841771693 0.822607534 0.826249649 89274948 one_ring_23diox Rhodococcus sp. R04 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.894614166 0.853658532 0.919670101 0.920575447 0.888405818 0.889487505 0.911954408 0.910264064 0.910618 0.882114646 0.790568095 0.872427367 0.866763015 0.811889864 0.810621145 0.888635915 0.927832286 197626731 nitrilase Cyanobium sp. PCC 7001 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 0.957751154 0.884270582 0.951810406 0.954383912 0.94337023 0.918840485 0.921912911 0.936994058 0.914624887 0.885930942 0.899171162 0.936314085 0.877818669 0.876561168 0.8936838 0.825354198 0.898737663 0.942625535 32895084 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.819624309 0.782754813 0.816109469 0.804719913 291245558 aps_apra uncultured bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.88748212 0.841404881 0.89516827 0.777014128 0.833262524 0.82459648 0.815351633 0.829313092 227494347 acetylglucosaminidase Actinomyces coleocanis DSM 15436 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces coleocanis; 1.031646686 0.966723496 1.026789623 1.048479516 0.988648961 0.967673817 0.988510801 1.002510963 1.002723764 0.981176457 0.994713126 1.015555432 1.006964109 0.947615581 0.960657975 0.9987752 1.005756218 0.974577194 193086561 AcnA Chlorobaculum parvum NCIB 8327 Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 0.758363112 0.851181576 0.805939403 0.907656087 0.794571648 0.81337387 0.810630439 0.770056948 0.837184592 0.821223142 0.825943292 0.812185631 292833569 alkk Streptomyces sp. e14 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.871644268 0.822384812 0.893424186 0.956004493 0.906229896 0.880298104 0.85615625 0.894159878 0.907438772 0.891014583 0.98413145 0.891409446 0.902994603 0.860175981 0.870700551 0.873371926 0.880872863 0.890742536 88863733 FBP_aldolase Jannaschia sp. CCS1 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 0.997677258 0.979338035 0.939357735 1.008627836 0.982098723 1.029899219 0.973324122 0.978396152 1.013258477 0.989358843 0.981951689 0.995637568 0.943653637 0.978607303 0.946870552 0.96182028 0.980243819 1.013957868 387842568 amyA Fibrisoma limi BUZ 3 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 0.806869225 0.834189113 0.846285969 0.826564635 0.813077118 0.850346341 0.867059822 340027049 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 1.096290332 1.066363126 1.084079281 1.091477061 1.09470399 1.115118753 1.073810333 1.075823832 1.093696283 1.082750892 1.087633621 1.124529245 1.068684018 1.084498417 1.100624019 1.067267695 1.103465084 1.07329329 116624210 dehh109 Solibacter usitatus Ellin6076 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 1.062857774 1.076198703 1.022786281 1.047917306 1.084959813 1.081107757 0.991592218 0.976039522 0.99659706 1.027778667 0.999480415 1.02756562 1.027507544 1.004010958 0.96908576 1.001577665 1.099568781 1.064818378 335437954 xylanase Halorhabdus tiamatea SARL4B Carbon Cycling Carbon degradation Hemicellulose superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 1.006834616 1.051229886 0.921729591 0.981679746 0.945943136 1.003027957 0.908161297 0.946973769 0.990258952 0.959443091 0.958176511 0.975456324 0.932678488 0.998453305 0.935967283 0.944503897 1.019197294 0.963476239 161378972 arsc Oceanibulbus indolifex HEL-45 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 0.996987086 1.00463304 0.999432522 1.00314504 0.982369551 1.006023211 0.971274074 0.964455434 0.995039093 0.949837068 0.94902549 0.936131865 0.920515072 0.944524382 0.91718199 0.90047505 1.006943573 1.008012427 116043947 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.794743239 0.842784595 0.795484103 0.803845001 0.833081393 0.8259659 0.807368498 0.831777208 0.859734208 146410979 catechol Bradyrhizobium sp. BTAi1 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1.208980169 1.23634648 1.183709567 1.209384004 1.201387881 1.21212571 1.203267087 1.192867298 1.216996932 1.182786761 1.184012816 1.206241334 1.183533653 1.166060943 1.162505255 1.157251392 1.201709116 1.214559235 383826212 limeh Mycobacterium xenopi RIVM700367 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 1.158596644 1.142733743 1.124145579 1.135001996 1.151885988 1.158086675 1.12007854 1.126008606 1.109945097 1.118580167 1.132415494 1.156071342 1.144181326 1.104023185 1.11174397 1.092865547 1.161748992 1.140154568 256833467 arsc Jonesia denitrificans DSM 20603 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 0.895489316 0.8470271 0.828887232 0.846336917 0.864096863 0.814153833 0.823006598 0.821573066 0.846310606 0.813094439 0.830239549 0.863065527 0.851623562 71735530 vana Pseudomonas syringae pv. phaseolicola 1448A Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 0.957925084 0.935174566 0.914128823 0.947508199 0.945408131 0.988488919 0.932474731 0.872514385 0.928716152 0.99184441 0.973257636 0.928902356 0.958514485 0.981337969 0.847051209 0.948781312 0.978632642 0.962194936 296093606 amyA Thermobispora bispora DSM 43833 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 1.336307008 1.324793711 1.331348231 1.299030244 1.323430106 1.359187329 1.31805828 1.308049452 1.312334767 1.3167796 1.321636978 1.317160287 1.283499529 1.286263851 1.244006836 1.302307135 1.324731524 1.327004364 291424984 cda Serratia odorifera DSM 4582 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 1.001592605 1.009032907 1.009110269 1.004529928 1.018032604 1.047321374 0.98991994 0.995626728 1.041976747 1.045575101 1.002080985 0.993863986 0.996886265 1.016539761 0.991175568 0.998142414 1.040116708 1.018087011 288917136 amyA Frankia sp. EUN1f Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.381028049 1.377844066 1.363155569 1.363013447 1.343529816 1.354015653 1.335536425 1.359208258 1.346741821 1.336257195 1.356552414 1.364882073 1.339794884 1.319296645 1.353875826 1.322672409 1.381094067 1.33777848 152991669 sqr Sulfurovum sp. NBC37-1 Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 0.864873805 0.850158237 0.853639559 0.898079835 0.851295717 0.848038581 0.846402419 0.875524146 0.91133224 0.85463207 0.863240064 0.889170567 0.83119489 0.858800839 0.838201334 0.850057286 0.854333206 380494657 dehh109 Colletotrichum higginsianum Organic Remediation Chlorinated solvents NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum; 1.116080095 1.106441573 1.090118089 1.127201839 1.114740723 1.112107832 1.111912052 1.070934555 1.098118568 1.133810483 1.116038081 1.103474097 1.086667375 1.094112109 1.030237596 1.057264972 1.073401303 1.08081009 403380725 phn Paenibacillus sp. JC66 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 0.792332207 0.805781549 0.824645638 0.808354134 85777065 amyA Anaeromyxobacter dehalogenans 2CP-C Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 0.812726373 0.872586886 1.000505111 0.836554539 0.820098441 0.83544208 0.854589194 0.825837416 0.824022563 0.85545645 388530040 b_lactamase Tistrella mobilis KA081020-065 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 0.831777157 0.793024777 0.86037696 0.814876324 0.843700169 0.832321635 223714308 arra uncultured bacterium Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria; 0.937919483 1.056459706 0.970518753 0.980214385 0.981106935 0.980820558 0.97964024 0.950885629 0.954366849 0.991242088 1.004917815 0.969855637 0.969330257 0.984342205 0.967761088 0.975880548 0.993370432 0.988424851 209518590 phn Burkholderia sp. H160 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1.121632132 1.145464641 1.097057997 1.108144248 1.070834889 1.154191021 1.071120027 1.06346607 1.054519838 1.070169462 1.086735236 1.061632933 1.053533614 1.111523881 1.082906637 1.083579352 1.131180788 1.09550746 238760545 terc Yersinia aldovae ATCC 35236 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 0.85584099 0.879131862 0.833391145 0.905620633 0.875922299 0.871182169 0.853284967 0.837905349 0.848060321 0.847197695 0.841300335 0.825500052 0.880615406 0.856233716 251790585 arylest Dickeya zeae Ech1591 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 1.373515484 1.328610395 1.330502859 1.37573746 1.307868798 1.371806477 1.342373419 1.37244337 1.34289775 1.336323426 1.309872974 1.340302324 1.291089692 1.292076443 1.272175524 1.325288894 1.37163148 1.312573952 300022845 exaa(moxf) Hyphomicrobium denitrificans ATCC 51888 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 1.05042633 0.969461968 0.960594859 0.928136493 0.84469661 0.928380282 0.89724675 0.919349281 0.92648611 0.892373465 0.925442642 0.933488885 0.834562571 0.904774033 0.867970355 0.890241145 0.913954812 0.948510219 119391415 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.047734833 1.033634059 1.030247063 1.011034225 0.968886996 0.959917071 0.971403687 1.024629433 1.022290334 1.042276452 1.006471788 1.021748553 0.951311723 1.016011364 0.998270308 0.994622988 0.996671716 0.998023371 223886697 phenol_oxidase Polyporus tuberaster Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 1.095051333 1.150933878 1.06337872 1.075868049 1.064606134 1.116961371 1.07047477 1.056117407 1.038495577 1.09868986 1.089573915 1.070277976 1.093741494 1.075823732 1.086053464 1.070975762 1.065648851 1.086842107 48094247 xamo Pseudomonas sp. OX1 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.748359501 0.856329477 1.039296584 0.934409768 0.840730799 56709000 norb Silicibacter pomeroyi DSS-3 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 0.964759751 0.957765647 0.947757988 0.950919245 0.923954203 0.947590011 0.910419617 0.933172687 0.940780461 0.946263569 0.906482459 0.969466453 0.919571109 0.881936742 0.95055278 0.925524561 0.977146416 0.976630304 256394993 amyA Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 0.809240344 0.812061191 0.83677051 0.873899499 0.822061143 0.833915445 0.853361381 0.860155519 0.849194524 0.810839777 0.846593534 311103473 terc Achromobacter xylosoxidans A8 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 0.754247714 0.816517973 33590262 xylanase Scytalidium acidophilum Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;genus:Scytalidium; 1.093767233 1.079230004 1.023904238 1.084685727 1.04119366 1.074557793 1.022863721 1.094673173 1.093694829 1.084468609 1.033734958 1.044045818 1.059966992 1.103410216 0.985583768 1.085520202 1.111677092 1.085391885 78061123 terc Burkholderia sp. 383 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 0.850774037 0.969402016 0.864566182 0.825195178 0.876362281 0.857694774 0.84682681 0.861666841 0.860096507 0.870571642 0.82989771 0.902156282 0.858521323 0.901022502 0.897395837 0.837466032 0.903780338 0.930232317 67540930 phenol_oxidase Aspergillus nidulans FGSC A4 Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 1.176021863 1.136402273 1.143890663 1.180665891 1.146846622 1.148775393 1.134613417 1.167218009 1.163871796 1.137000825 1.150887584 1.161860357 1.157265901 1.107611667 1.145034025 1.160670787 1.168105657 1.132837002 170027477 napa uncultured bacterium Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria; 0.950879158 0.942116017 0.916497746 0.948956747 0.943302079 0.971084257 0.912113761 0.904087588 0.904415316 0.938458144 0.909033186 0.933918004 0.92053521 0.912430962 0.911564142 0.950294422 0.950026907 0.96759317 41395431 arsc Mycobacterium avium subsp. paratuberculosis K-10 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 0.840718943 0.867149618 0.844487525 0.855476384 0.835565817 0.845596795 0.859817314 0.826120823 0.850150508 0.85441429 0.833299922 0.862714558 0.829851276 0.854340273 0.81763522 0.84701561 0.845999042 118655574 arsc Burkholderia multivorans ATCC 17616 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 1.098128739 1.122939525 1.058626659 1.103691772 1.067299055 1.108133646 1.057696912 1.057333288 1.070948601 1.071754081 1.051506914 1.061537543 1.049272128 1.045470086 1.008831555 1.056880399 1.092871925 1.098572954 296930048 amyA Starkeya novella DSM 506 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 0.965471003 0.903354666 0.921735941 0.984470696 0.950750121 0.961313909 0.880448877 0.913249589 0.920296894 0.967091774 0.950391083 0.952119537 0.913141309 0.934258957 0.918115783 0.902657273 1.014164877 0.918718855 119714242 merb Nocardioides sp. JS614 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 1.062176331 1.15952205 1.103379118 1.121306336 1.11348792 1.12908905 1.056065956 1.072932084 1.097465415 1.117540123 1.097137182 1.100743608 1.094125863 1.109679437 1.096219154 1.094645607 1.108344211 1.12683095 290583340 nifh uncultured bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.837213468 0.784126461 0.879371691 0.833037007 0.813898919 0.788782943 0.855286998 0.888171416 38524460 ara Streptomyces thermoviolaceus Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.940656422 0.917366431 0.930495045 0.900906007 0.928827045 0.894703475 0.884618274 0.915873247 0.908974014 0.877485623 0.908391842 0.889572443 0.850418398 0.845742335 0.811186769 0.929810058 0.972137256 297624301 amyA Truepera radiovictrix DSM 17093 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 1.086076688 1.018447568 0.944861406 0.981957349 0.955217709 0.97436055 0.934678294 0.993805838 1.027079871 0.97747262 1.050481199 0.976530774 0.934026178 0.917240986 0.937583132 0.974625668 0.996912558 0.9768137 258651580 mhpa Nakamurella multipartita DSM 44233 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 1.044010614 1.021810704 1.015114281 1.086475125 0.997935249 1.049566458 1.033596114 1.050144206 0.995112409 1.010452454 1.002480379 1.054683478 0.984491409 1.007456307 1.00681943 1.029984266 1.030259689 1.027893963 121302140 mer Ralstonia pickettii 12J Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 0.855017378 0.86249074 0.916930609 0.967955107 0.96152965 0.929075514 0.949643534 0.870815144 0.976004301 0.924197993 0.909115838 0.909210433 0.903813103 0.895687938 0.892930624 1.066644557 0.938389315 0.93048731 312196157 amyA Frankia sp. EuI1c Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.763886451 0.811955069 126737911 tktA Roseobacter sp. SK209-2-6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.814382405 0.840650621 0.811101813 0.813570097 0.852821543 403647740 atzd Gordonia sp. KTR9 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 0.764766826 0.825117793 0.792743078 0.79000342 256259389 xylanase Penicillium occitanis Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 0.853551609 0.858815447 0.866404281 0.854251664 0.894849739 0.899109326 0.834702404 0.886141938 0.84242995 0.929658562 0.864238822 0.876643885 0.872719659 0.953898411 0.908922784 0.862684536 0.861678152 0.881942133 257792322 nrfa Eggerthella lenta DSM 2243 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 0.7488542 0.781186274 108798992 chnb Mycobacterium sp. MCS Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.031349666 1.034370305 0.952007212 1.005954724 1.022223184 1.029276334 0.907917309 0.947100762 0.948329244 1.009342851 0.914767492 0.977914224 0.977191041 0.972542093 0.902575854 0.984238078 1.179251026 0.942566343 156742299 amyA Roseiflexus castenholzii DSM 13941 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 0.893762218 0.997572376 0.992066023 0.962084289 1.011972231 1.046106127 0.974077293 0.988295625 0.964107215 1.012329408 0.985770412 0.999523689 0.991991114 0.960136418 0.938481864 0.991397362 0.988683779 0.9800741 260778330 atzb Vibrio coralliilyticus ATCC BAA-450 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 0.942349242 0.883835125 0.962604451 0.835118039 0.833633601 0.830058232 0.925674791 0.869934395 0.838225335 0.842528017 0.8663959 0.955533442 0.878247052 331001837 pula Lachnospiraceae oral taxon 107 str. F0167 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Lachnospiraceae oral taxon 107; 0.918110213 0.988243753 1.021621099 0.906520165 1.014435655 1.04747521 1.049139849 0.918653544 0.862458044 1.073954327 1.05724023 0.945350899 1.027275584 1.072512924 1.146402044 0.93583884 0.916860449 1.072182855 383818773 badh Mycobacterium phlei RIVM601174 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 0.870981422 0.865589633 0.894127223 0.893475104 0.806028913 0.862737136 0.82391049 0.817010379 0.909250753 0.854760317 0.834697768 0.867756049 0.815676825 0.837111355 0.902337316 0.842349694 0.902454688 0.894512613 302686354 xylanase Schizophyllum commune H4-8 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 1.097721212 1.069028622 1.050822799 1.063069898 1.043199215 1.093497468 1.007862017 1.023607847 1.040984727 1.05089581 1.041845301 1.024857858 1.026818868 1.042044835 0.999467069 1.037429363 1.111612399 1.064942015 294636431 amyA Edwardsiella tarda ATCC 23685 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 0.804558565 0.816112748 0.814858504 0.799016005 0.879891736 0.830099154 0.844502119 0.828305826 0.856898992 0.82106293 0.844864622 0.842889019 0.788119881 0.843401664 167777438 amyA Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 0.888425828 0.868297452 0.855393203 0.898562437 0.877342732 0.859016163 0.889135454 0.874870358 0.875082276 0.939435404 0.852547861 0.844809533 0.813128708 0.91887155 0.880415042 0.897227163 292675287 limeh Sphingobium japonicum UT26S Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 1.065130675 1.105827787 1.034557537 1.076242934 1.018174299 1.112214982 1.01207815 1.046797724 1.028600787 1.08845672 1.061743241 1.020512414 1.000314098 1.066319907 0.977783263 1.034408119 1.09362477 1.081784608 383782831 cellobiase Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 0.950074049 0.938155142 0.910589712 0.968641574 0.899303648 0.935927901 0.903038906 1.007594429 0.954420165 0.917746599 0.912617329 0.94495091 0.838965292 0.856743674 0.850725674 0.875328242 0.930419179 0.9284048 119384830 alkb Paracoccus denitrificans PD1222 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.262456375 1.210674151 1.229680968 1.236074511 1.23083219 1.234221168 1.22846633 1.224913678 1.221047762 1.198837521 1.216435348 1.238433378 1.212684716 1.18005212 1.214189091 1.202251835 1.23346795 1.186385284 383640455 B_lactamase_A Sphingomonas elodea ATCC 31461 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 0.943113424 0.945607268 0.908819961 0.958458445 0.916388841 0.956365135 0.977521816 0.972328358 0.896091201 0.95775242 0.891229881 0.953591628 0.878546159 0.880100173 0.814093832 0.877456257 0.964855731 0.940420063 167667801 amie Anaerotruncus colihominis DSM 17241 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 0.850131902 0.840448178 0.852899445 0.815839617 302436876 chnb Streptomyces sp. AA4 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.925651615 0.819101768 0.91671909 0.96343946 0.941772368 0.852765763 0.948245037 0.877099226 0.910806888 0.87253633 0.90906825 0.865331636 0.890932536 0.842239263 0.935883631 0.879777924 0.86266801 377564652 amyA Gordonia sputi NBRC 100414 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.947815076 0.973208271 0.967110147 0.979079959 0.955618714 0.941267979 0.919258034 0.90577716 0.86554417 0.894073442 0.908062738 0.925372788 0.917167079 0.850626198 0.859161113 0.91182249 0.976832534 0.943559092 238759193 urec Yersinia aldovae ATCC 35236 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 0.865333732 0.910453167 1.024057598 0.951729823 0.951760814 0.988839231 0.969305535 0.892921369 0.957533197 0.940063245 0.952293525 0.936569321 0.9458729 0.920116417 0.933604625 0.910605024 0.923521401 0.929888199 421953150 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.063444448 1.018888011 0.998255265 0.994817346 0.975167741 1.036087152 0.977144452 0.98700585 0.985472191 0.994273727 0.939962487 0.954067759 1.019175739 1.015727114 0.943653801 0.953538287 1.064472098 0.989524793 218117503 GAPDH_Parabasalia Eucomonympha sp. HsE15 Other Phylogenetic NA superkingdom:Eukaryota;order:Trichonymphida;family:Teranymphidae;genus:Eucomonympha; 0.948331486 0.868719287 0.973065824 0.932039712 0.977166116 0.870695755 0.980665962 0.861998718 0.867168896 0.988615485 0.932165554 0.904147606 0.944363014 1.03411448 0.871660572 0.909340104 0.842926863 0.88852176 154155244 tfda Parvibaculum lavamentivorans DS-1 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 0.921766688 0.930156755 0.942699188 0.879939135 0.929570585 0.883384834 0.87882563 0.873806307 0.85926987 0.908496969 0.916561863 0.935829808 0.895968489 0.867763418 0.875690595 0.8861489 0.866763125 0.891036791 302580062 tktA Gallionella capsiferriformans ES-2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 0.851161153 0.84840604 0.879752662 0.816081433 0.835628907 0.859571637 0.813935022 229567699 xyla Beutenbergia cavernae DSM 12333 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 1.089360127 1.161433735 1.038343616 1.129978205 1.053305057 1.101777986 1.00913369 1.110575207 1.07581303 1.092724699 1.038464844 1.082123534 1.038006515 1.059472098 0.992069701 1.04820091 1.114137811 1.101823415 381337624 nirb Marinobacter hydrocarbonoclasticus ATCC 49840 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 1.122859196 1.133810393 1.158343567 1.125461777 1.149707075 1.137614048 1.159185485 1.182326191 1.120859074 1.134749841 1.148618 1.150119971 1.12862407 1.09162806 1.074748914 1.075744763 1.118095399 1.131471532 359822558 limeh Mycobacterium rhodesiae NBB3 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.855190585 0.86694419 0.904118607 0.815279957 0.807754043 0.819089536 0.823511285 115375557 endochitinase Stigmatella aurantiaca DW4/3-1 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 1.000646151 1.016598358 0.994022467 0.97486655 0.967296309 165880041 exoglucanase uncultured fungus Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi; 0.831958843 0.819571363 0.847857141 0.820825736 0.793630813 0.836699872 0.785444822 0.817858171 0.864336359 387936667 gdh Cellvibrio sp. BR Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 0.899826052 0.975050844 1.102736354 0.927569093 0.973889729 0.972148657 0.918348006 0.898714419 0.9374571 0.993558891 0.965787222 0.982124496 0.980776449 0.927582039 0.898630732 0.978189736 0.980665116 0.975333644 197625046 alkh Cyanobium sp. PCC 7001 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 0.83805656 0.87010173 0.844947251 0.833424226 0.826612988 0.85022735 0.807585757 0.804676829 0.851540898 0.885521273 0.866979021 356882362 FBP_aldolase Azospirillum brasilense Sp245 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 1.060126906 1.000783166 0.98532431 1.100273529 1.017820527 0.999269608 1.02070681 1.072895824 1.071855372 0.999904785 0.995085623 1.077070533 1.002330026 1.020037491 1.015215371 1.031739749 1.0743389 1.021006065 66801933 narg unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.931982513 0.908458128 0.905747114 0.953066461 0.850563785 0.933722026 0.921838341 0.924078116 0.9432587 0.919832257 0.943902674 0.915237352 0.905447119 0.89377161 0.831399768 0.939318303 0.957119911 0.928493712 351684111 mer Rhodanobacter sp. 2APBS1 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 1.268841203 1.205674992 1.251151251 1.283381494 1.26530524 1.28217718 1.273086118 1.285077931 1.261726493 1.224620254 1.260904878 1.2713392 1.249220118 1.199444913 1.220448749 1.234136995 1.292219487 1.189581419 133912674 pcag Saccharopolyspora erythraea NRRL 2338 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 0.906782629 0.92704465 0.873387104 0.916720164 0.919924899 0.932258851 0.872420251 0.923198936 0.939302316 0.887193559 0.851012004 0.886349938 0.85759114 0.822512102 0.857837342 0.905694361 0.937372462 335437738 amyA Halorhabdus tiamatea SARL4B Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 1.079768784 1.089893354 1.006654512 1.086912531 1.059861932 1.096499783 1.059688873 1.043085943 1.046553766 1.062918933 1.047473175 1.081698848 1.044747322 1.038242561 1.035218366 1.057192025 1.055451317 1.055167143 383777497 amyA Actinoplanes missouriensis 431 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1.479824744 1.424499969 1.435909115 1.435623127 1.423702829 1.436472307 1.397371237 1.419081453 1.431001008 1.422046445 1.419368655 1.438912147 1.390976312 1.380161651 1.388948691 1.39804692 1.462204309 1.40796273 91795567 vana Chromohalobacter salexigens DSM 3043 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 0.796748048 0.867832991 0.809578808 0.829495601 158538027 mcra uncultured euryarchaeote Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota; 0.968109657 1.01464531 0.938328649 0.962298321 0.934292647 0.996106047 0.965678883 0.932752041 0.93613404 0.944783169 0.966434118 0.962010849 0.945039947 0.907146212 0.937969752 0.943906796 0.966617633 0.958980042 217977946 nira Methylocella silvestris BL2 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 0.788127258 0.803314615 0.813359878 0.801353045 0.777729151 0.823111857 0.817114311 145216424 urec Mycobacterium gilvum PYR-GCK Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 0.924942226 1.006074945 0.896105439 0.927762177 0.842811677 0.916203274 0.85429158 0.937275266 0.931007186 0.914559039 0.849846464 0.895489873 0.841484984 0.861375276 0.854796256 0.939784633 0.950607923 349687562 FBP_aldolase Gluconacetobacter oboediens 174Bp2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 0.932891812 0.888255084 0.925956622 0.927216416 0.856617666 0.84426647 0.867006633 0.963243614 0.896709024 0.851527257 0.831901978 0.830111532 0.84431051 0.84105495 0.878699868 0.932866571 0.913659914 305856414 ara Paenibacillus polymyxa E681 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 0.778313809 0.78276614 0.807117952 0.841264437 12659186 nifh Treponema denticola Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 0.773122485 0.874099284 0.804026117 0.854856136 0.796940266 0.846175669 0.82351546 0.793936896 0.799456078 309245367 pectinase (pectate_lyase) Paenibacillus polymyxa SC2 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 0.812048393 0.804844761 0.878306765 0.864855164 0.806013345 0.895200262 0.859176916 0.844854913 0.850324149 0.847225717 0.818175704 0.877959908 0.852433878 0.785151669 0.834321496 110646365 alginase Alcanivorax borkumensis SK2 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 1.11503837 1.076697187 1.047171213 1.096631475 1.064365845 1.06229039 1.047593388 1.044786387 1.07435926 1.080723976 1.054916609 1.047996823 1.022762977 1.029161823 0.996723093 1.017774375 1.089040003 1.079621079 71001194 axe Aspergillus fumigatus Af293 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 0.934917541 0.872152058 0.874000387 0.938676197 0.860466702 0.853554296 0.90978094 0.908524841 0.883905088 0.848302937 0.856598494 0.851840423 0.900910489 0.831045214 0.877173159 0.905044143 219981040 pectinase (pectate_lyase) Rhodopirellula baltica SH 1 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 0.828894152 0.878417376 0.800779283 0.900807643 0.834122917 0.85938543 0.846814813 0.878469315 0.828290101 0.834573847 0.846565232 0.835850379 0.868349756 296166833 cutinase Mycobacterium parascrofulaceum ATCC BAA-614 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 1.424013295 1.384004279 1.390702909 1.401570545 1.363774733 1.428058335 1.38932048 1.39951393 1.382475566 1.393672647 1.37117245 1.417245745 1.346560263 1.355098209 1.370837587 1.371468132 1.389533665 1.350953871 13423934 xylc Caulobacter crescentus CB15 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 0.954820523 0.928813606 0.928513778 0.957512571 0.950967457 0.91205625 0.980143472 0.979642734 0.960400327 0.933461548 0.948253537 0.947676115 0.972494716 0.889270326 0.912168988 0.872443762 0.927798053 0.916542596 156976058 pula Vibrio harveyi ATCC BAA-1116 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 0.965163317 0.93216579 1.01546607 0.96423774 0.891941101 0.922966682 0.928759199 0.953704195 0.955357805 1.016882054 0.937216001 0.969971465 0.884600166 0.89805656 0.817653278 0.893517725 0.934743383 0.969678371 219542497 mcl Chloroflexus aggregans DSM 9485 Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 0.790409751 0.838881359 0.810341449 0.827042292 0.81907693 0.864089615 329902077 one_ring_12diox Oxalobacteraceae bacterium IMCC9480 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 1.044956613 1.024002608 1.038897676 1.088918666 1.0304387 1.042892005 1.026776244 1.044747771 1.078666615 1.078797229 1.048950541 1.070476202 1.016311917 1.0134475 1.018704777 1.042032837 1.044223492 1.046495545 332013820 xylanase Sphingomonas sp. S17 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 1.151108086 1.076811419 1.08219902 1.214700283 1.117349373 1.120261858 1.114582676 1.172873995 1.106213157 1.058995144 1.087918035 1.107124516 1.070681617 1.046132153 0.992710657 1.033912632 1.103784246 1.072541979 290969058 fthfs Megasphaera genomosp. type_1 str. 28L Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera;species:Megasphaera genomosp. type_1; 0.800544666 0.822128706 0.769195297 0.810416389 0.823193039 0.845656962 0.831659013 0.839180107 0.812303376 0.855822477 0.780440044 0.808480603 0.817700763 0.839833475 120323821 arylest Marinobacter aquaeolei VT8 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 0.971953823 0.982315789 0.98385034 0.974488398 0.955133636 0.989855795 0.933732097 0.922248164 0.95713436 1.023851322 0.933375814 0.987742386 0.89581878 0.97091656 0.934010734 0.912811992 0.968963773 1.001438825 259345361 pgk Silicibacter sp. TrichCH4B Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.978822482 0.959322225 0.952320793 0.997344721 0.991645762 0.973987494 0.992398691 0.982666923 0.941420775 0.954252429 0.97764397 0.943485015 0.978745579 0.88840756 0.8484591 0.878717148 0.95268847 0.976592971 292664025 GAPDH_Calvin Candidatus Puniceispirillum marinum IMCC1322 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 0.988762289 0.989685029 0.979998799 1.009373255 0.994370321 0.97238174 1.015569459 1.005773926 0.997787919 0.946191161 0.924291704 0.965806162 0.982336988 0.910383666 0.885579942 0.933222732 0.979123035 0.96242433 333441098 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.885213775 0.817231273 0.898543029 0.913152985 0.854397834 0.861534249 0.837321702 0.889686221 0.902238487 0.862719427 0.83543176 0.88812011 0.868694457 0.884999092 0.914819545 0.8550961 0.916574031 0.887288236 51534869 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.819549609 0.931141568 0.818018233 0.820373137 0.811007154 0.831829776 0.811048439 0.808379862 0.874877821 0.788895559 0.847254591 0.912329636 51869934 chitinase uncultured bacterium Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria; 1.059085362 1.147739091 1.192022084 1.106179387 1.094709917 1.12991395 1.009395514 0.91092157 1.114442482 1.139291182 1.043412363 1.116070712 1.044057075 1.095894698 1.030178798 1.068729006 1.096536486 1.144730172 72395481 linc Methanosarcina barkeri str. fusaro Organic Remediation Pesticides related compound NA superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 0.824000372 0.804092735 0.850580967 0.860512335 0.879828253 0.919338095 0.892269935 0.875518332 0.800943768 0.842520338 0.848331445 0.881795164 0.870697717 0.869648183 0.84640543 0.860140843 0.843921393 63081982 nosz unidentified bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.963622137 0.925612561 0.911718462 0.96342309 0.938288895 0.947517292 0.948753751 0.95852277 0.960187349 0.912032131 0.913203123 0.928272368 0.91859314 0.834157432 0.926178877 0.917317672 0.949890721 0.947037501 386846789 terc Actinoplanes sp. SE50/110 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 0.897709351 0.938078478 0.903316125 0.923621735 0.870678052 0.906886952 0.922331138 0.872155941 0.919128634 0.90062151 0.888680227 0.910551615 0.86298387 0.879025296 0.793680963 0.830103174 0.892333042 0.92158298 353192532 limeh Mycobacterium rhodesiae JS60 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 0.820618036 0.928598063 0.853246906 0.880826181 0.862226763 0.927827381 0.833662087 0.867196312 0.765267523 0.859527567 0.834908068 0.887532636 0.855118794 0.905782568 0.920461218 0.819812377 0.868709631 0.951551262 76803721 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.128719147 1.06504301 1.175389825 1.142772775 1.073855597 1.108027821 1.131020968 1.106053351 1.154332957 1.114063862 1.113737938 1.102812505 1.098241971 1.052279878 1.112553015 1.092578327 1.128281286 1.079543609 119225912 catechol uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.38466496 1.366985991 1.331617193 1.34706547 1.324017921 1.374562083 1.318575694 1.325130307 1.320429776 1.333580808 1.324901347 1.30964086 1.297320042 1.291784433 1.29369567 1.312246773 1.357333692 1.347584823 179346860 soxY Methylobacterium populi BJ001 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 1.319690865 1.298926094 1.267047571 1.269209101 1.252374801 1.307704766 1.247011839 1.27229001 1.2677521 1.262465013 1.255833549 1.262495536 1.233630856 1.26301223 1.223299896 1.267430061 1.299149595 1.278795684 225194053 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.780591067 0.811801847 338751668 ppx Acetobacter tropicalis NBRC 101654 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 0.804901392 0.90657383 0.827308056 0.846773296 0.930167828 0.89767283 0.864012898 0.842940548 0.821836103 0.872625521 0.849433637 0.88641371 0.914927059 90022192 alginase Saccharophagus degradans 2-40 Carbon Cycling Carbon degradation Alginate superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 0.933603849 0.948656835 0.952551263 0.97959595 0.965878489 0.920689105 0.952800907 0.992003 0.966443096 0.993740444 0.960055583 1.019854117 0.936206147 0.964086916 0.905092259 0.968127739 0.920811028 0.955025134 192897548 ppk uncultured bacterium Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria; 0.925694509 0.94503007 0.86758414 0.88532938 0.834051277 0.911294261 0.906050208 0.910383555 0.910370707 0.91010354 0.853946469 0.895813273 0.857801928 0.876573096 0.855522195 0.815518188 0.922279966 0.944383601 33333865 mult_ring_12DiOx Mycobacterium sp. S65 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 0.899140955 0.906657022 0.874018106 0.908286539 0.903505442 0.936181614 0.867929542 0.89295541 0.870880803 0.896738082 0.836649279 0.967498212 0.858028879 0.867901887 0.86808956 0.890758611 0.914332037 302309595 protease_aspartate_fungi Ashbya gossypii ATCC 10895 Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 0.966960458 0.862945222 0.893835582 1.015721558 0.907260834 0.923135006 0.942037395 0.985106876 0.995186257 0.907338786 0.931132506 0.958646106 0.910751904 0.891967958 0.945016031 0.945998115 0.953712108 0.912144218 374601989 bphF1 Paenibacillus dendritiformis C454 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 0.973107753 1.02312692 0.95057002 0.999945399 0.956647184 0.937826157 0.973373741 0.959719147 1.006580436 0.923329248 0.955388395 0.994499411 0.993373733 0.91289424 0.924712245 0.953681365 0.993390103 0.924606756 219965733 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.780579685 0.836694817 0.845183715 0.836666511 0.80941837 13992710 dsra Bilophila wadsworthia Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila; 0.984904493 1.007467247 0.983426402 1.038222764 1.014641964 1.028061899 1.005205935 1.031203664 0.965929206 1.008815311 1.020156954 1.011311759 0.991171334 0.999642655 0.905317847 0.955453798 0.999903675 1.021477764 270288049 exoglucanase Stilbella annulata Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Acrostalagmus; 1.065754468 1.04231032 1.01043279 1.144698351 0.999605478 1.062546379 1.052038396 1.091138901 1.090837147 1.012805516 1.026081197 1.047514614 1.010517815 0.980514475 0.997842919 1.039239611 1.099068269 1.053411187 254442602 ara Verrucomicrobiae bacterium DG1235 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 0.981225755 1.024846802 0.978403497 0.959444015 0.981769475 1.026536377 0.996197052 1.005660337 0.982983592 1.002460172 0.961297207 0.978843934 1.025568551 0.970788036 0.956070388 0.965621346 0.964789421 1.035016928 388429536 nosz Rhodanobacter sp. 115 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 0.854757087 0.820932905 0.867721637 0.854376967 0.836083956 10637971 msad Pseudomonas pavonaceae Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae; 0.854124673 0.842718696 0.813996383 0.932787137 0.814688874 0.808713786 0.842640648 0.824079603 0.829358271 0.798609354 0.812669817 0.911719319 355336205 xylm Pseudoxanthomonas spadix BD-a59 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 0.838623178 0.803448692 0.848015177 0.885424454 0.834785465 0.806085703 0.855606774 0.861499457 0.844082442 343924910 gdh Gordonia alkanivorans NBRC 16433 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 0.954959266 0.927332597 0.963282685 0.962255131 0.952727446 0.985872391 0.974146995 0.995117027 0.941677221 0.955508045 0.965523645 0.971815516 0.92160175 0.916761412 0.895502194 0.912707262 0.951748125 0.975816079 67154492 poba Azotobacter vinelandii AvOP Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 1.271950908 1.279638998 1.2251646 1.243493771 1.244775981 1.261408102 1.211410441 1.249954763 1.225215843 1.230330356 1.23704775 1.242594734 1.226804726 1.229633749 1.223444068 1.220917553 1.25026378 1.254570058 320547119 amyA Streptococcus equinus ATCC 9812 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equinus; 0.939847564 0.904683987 0.911304705 1.015035942 0.952678546 0.930070429 0.961125734 0.954026889 1.011392506 0.919097711 0.984261155 0.946783868 0.922952192 0.910636533 0.879660237 0.897797631 0.878936947 0.957667511 270265101 amyA Serratia odorifera 4Rx13 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 0.945529034 0.953947051 0.919312287 1.00471213 0.912758208 0.969778279 0.914593839 0.973826458 0.956504062 0.95495008 0.93627422 0.959632584 0.888336682 0.945155321 0.864407164 0.910086044 0.979945682 0.976827337 336068946 amyA Prevotella multisaccharivorax DSM 17128 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 0.901191203 0.900766863 0.843012424 0.860132426 0.894753771 0.869709765 0.86420655 0.876335238 0.845793744 0.81631494 0.836700748 0.832230029 0.886654164 0.834765821 0.83118499 0.867043281 0.856967655 289209549 GAPDH_Calvin Thioalkalivibrio sp. K90mix Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 0.983268305 0.908219372 0.979630181 1.018356221 0.944879643 1.00435261 0.99441279 1.044761824 1.003654655 0.973317309 0.930283717 0.976668744 0.94046676 0.910633423 0.932061251 0.943563497 0.997464211 0.956355435 76057545 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.460740867 1.422032501 1.382735258 1.40594227 1.356343599 1.425278648 1.347701339 1.382184611 1.394144527 1.385978724 1.365918562 1.387699164 1.378871067 1.326525777 1.341806908 1.343006973 1.441037122 1.390086544 118431474 C_CoA_hydratase_DiC4HB Aeropyrum pernix K1 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 1.066513128 1.018223736 1.088819453 1.033857405 0.974824846 1.009293196 0.939890174 0.963708008 1.026242069 1.071404026 1.049223805 0.997387419 1.015119162 1.020365929 0.973028123 0.978207722 1.082951993 1.034583179 242239624 phenol_oxidase Dickeya dadantii Ech703 Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 1.1412458 1.124120829 1.150973861 1.094831636 1.109159306 1.122068666 1.116028653 1.104179883 1.094857605 1.122806691 1.112449306 1.097646354 1.08498632 1.075765246 1.071095701 1.096660404 1.121374142 1.130689157 288315928 endoglucanase Enterobacter cancerogenus ATCC 35316 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 0.981174106 0.948068152 0.903677724 0.913263519 0.880307435 0.926759559 0.874739209 0.926207761 0.951367976 0.913642118 0.893074925 0.909103651 0.931059656 0.892076458 0.879667757 0.891288901 0.936948793 0.922711384 239805178 tfth Variovorax paradoxus S110 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 1.154307104 1.15394137 1.13849428 1.13302747 1.106305174 1.140741608 1.092651362 1.121914754 1.115376368 1.139558457 1.10286033 1.10254789 1.0929067 1.125722075 1.065407127 1.102784797 1.143950581 1.145143968 220933290 FBPase Thioalkalivibrio sulfidophilus HL-EbGr7 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 0.789015433 0.826899716 383447492 amyA Rothia aeria F0474 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia aeria; 0.935482174 0.908279775 0.931524576 0.950020887 0.89914866 0.926125263 0.921735301 0.88698346 0.901556943 0.940557867 0.951999726 0.906655167 0.920098619 0.927102781 0.883949579 0.878224706 1.009435727 0.915051123 229820013 ara Beutenbergia cavernae DSM 12333 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 1.32336089 1.297416115 1.301243595 1.289132421 1.299484341 1.339607359 1.296715608 1.296315986 1.307959785 1.31716282 1.303011903 1.30609764 1.282015074 1.276254158 1.257788473 1.288403722 1.322061001 1.32023859 170174517 terc Candidatus Korarchaeum cryptofilum OPF8 Metal Homeostasis Tellurium Detoxification superkingdom:Archaea;phylum:Korarchaeota;genus:Candidatus Korarchaeum;species:Candidatus Korarchaeum cryptofilum; 0.86085735 0.823024859 0.893822785 0.869947229 0.873369822 0.856439702 0.896182416 0.857401926 0.855713357 0.880348704 0.889479095 0.896275985 0.822648406 0.854608971 0.855649691 316918965 Sir Enterobacteriaceae bacterium 9_2_54FAA Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae; 0.85071412 0.79476312 0.749902992 0.92358674 0.814713164 0.785254419 83317036 nirk uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.838768293 0.798438238 0.828262113 0.824296839 0.818891576 0.861043574 0.835667125 0.803677554 0.793850151 0.862303852 0.791130806 0.823865603 0.823817963 0.815913713 347732924 terc Desulfovibrio sp. A2 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.921007551 0.83177643 0.872929674 0.914535613 0.865464458 0.845730843 0.859555252 0.975356196 0.965529978 0.868217243 0.840531901 0.927148004 0.830451869 0.835386298 0.865165656 0.885628444 0.9031013 222543122 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 1.152255749 1.108356149 1.089541279 1.144722107 1.151523923 1.156732061 1.187033152 1.112759509 1.094274505 1.104770992 1.091433434 1.085958901 1.112330581 1.100871187 1.014821623 1.121624979 1.080889897 1.107097749 239833715 xyla Ochrobactrum intermedium LMG 3301 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 0.81715312 0.819343199 0.827067482 0.784695746 0.802479913 0.799248691 0.811516255 0.850761351 76803727 alkb uncultured bacterium Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria; 1.175298173 1.185190453 1.171144174 1.164907394 1.126113522 1.183187982 1.13462526 1.174948597 1.141540213 1.138048923 1.138204522 1.179069836 1.114521103 1.140198514 1.111033782 1.155097067 1.154381465 1.139643369 325676558 limeh Rhodococcus equi ATCC 33707 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 0.805175341 0.864763412 0.838991516 0.904457004 0.818581784 0.836093208 0.871634224 118468557 vdh Mycobacterium smegmatis str. MC2 155 Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.958394407 0.935994475 0.909598318 0.999113276 0.908496178 0.95485582 0.891891401 0.945268181 0.886732867 0.900088315 0.890174215 0.932983912 0.924868763 0.889846212 0.900135285 0.931510291 0.986339157 0.948391423 325536517 pectinase (pectate_lyase) Xanthomonas vesicatoria ATCC 35937 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 1.126755364 1.082434852 1.109838827 1.131446313 1.092170019 1.108656475 1.098673251 1.104271604 1.112941968 1.076631141 1.091786852 1.092523967 1.095281835 1.052440945 1.065010641 1.091718158 1.129475959 1.067742137 28869111 poba Pseudomonas syringae pv. tomato str. DC3000 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 0.782788743 0.830034393 289174769 nfsb_2 Xenorhabdus bovienii SS-2004 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus bovienii; 1.116331423 1.068513201 1.112413957 1.118094349 1.106635073 1.141775903 1.091980251 1.115935307 1.079188174 1.093040451 1.084216487 1.129735402 1.042688754 1.064219901 1.039006432 1.086500095 1.132100877 1.110505509 157374446 dmsa Shewanella sediminis HAW-EB3 Organic Remediation Others NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 0.770885285 0.827433502 0.773260837 0.82722419 118167430 cdh Mycobacterium avium 104 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 1.084384286 1.052078524 1.034154095 1.043601265 1.003389068 1.050665257 0.994308601 1.005266432 1.035162177 1.026972265 1.021477495 1.014388319 1.010293256 1.017199188 0.946229044 1.001937048 1.063732786 1.063784833 381397807 amyA Microbacterium laevaniformans OR221 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 0.976650257 0.986741876 0.893365027 1.211373783 0.88730005 0.9411128 0.907493527 0.959682066 0.941563361 0.916364622 0.892428546 0.926352398 0.873633177 0.931987874 0.906673527 0.909680355 0.978225233 0.989079325 357384932 cysI Pelagibacterium halotolerans B2 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 1.199954265 1.199181881 1.15269127 1.200200417 1.192098454 1.167287671 1.178727705 1.191443984 1.191590819 1.184500352 1.17845884 1.208977897 1.171936833 1.143018312 1.138478639 1.181993669 1.196186719 1.135295456 256356849 limeh Catenulispora acidiphila DSM 44928 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1.009277118 1.060878032 1.000337577 0.968678268 1.015971945 1.0010807 0.963352137 1.014885228 1.011539014 1.041604837 1.016941589 1.013797958 0.968082026 0.952727608 0.925144975 0.965998397 0.986698645 1.011764412 118469448 cmci Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.865207423 0.813409132 0.858557563 0.815260014 0.847160772 0.870445333 0.830961088 0.805202086 0.829119684 0.789899155 0.816816855 0.846704201 145014131 cutinase Magnaporthe grisea 70-15 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 0.824786011 0.873377129 0.821549509 0.86803122 0.837585569 0.85149766 0.82780982 0.840386753 226244402 amyA Rhodococcus opacus B4 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1.236250214 1.265230988 1.185159565 1.218277815 1.200956564 1.245119546 1.161645682 1.19385733 1.189846356 1.216218817 1.191997164 1.196007391 1.192064083 1.197131373 1.138265549 1.182774846 1.216929623 1.233160542 374387881 urec Paenibacillus dendritiformis C454 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 1.115817502 0.821525565 158312924 amyA Frankia sp. EAN1pec Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.982230024 0.942159224 0.98459993 0.940109607 1.03383013 1.039324922 1.023668308 0.987340251 0.933679322 1.021693834 1.004158479 0.959694115 1.006982491 1.009230569 0.967120554 0.934491114 0.978261867 0.987067542 111017396 cdh Rhodococcus sp. RHA1 Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 0.884012679 0.881880598 0.862621135 0.866067543 0.848339047 0.892793993 0.863336444 0.847401631 0.876425386 0.907989841 0.831997843 0.891618595 0.814778694 0.822244804 0.820420542 0.850482417 0.850094115 302532581 xylanase Streptomyces sp. C Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.967323541 0.957361655 0.923384417 0.917040347 0.947830944 0.992895229 0.969136198 0.971929021 0.943982543 0.941926715 0.951775911 0.958205932 0.945782933 0.921089018 0.895435827 0.867922405 0.966012538 0.919041243 339790744 chitinase Streptomyces plicatus Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.852999435 0.831778636 0.809585168 0.897104993 0.86126706 0.821508265 0.880436224 0.903102455 0.810795968 0.828822489 0.837566006 0.884202733 0.879765802 0.865125559 329851586 ara Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.882128412 0.854991787 0.856237924 0.815630623 0.846231131 0.875865673 0.840363636 0.835691975 0.871735003 0.870745236 1.020443916 0.823972972 0.860951452 0.819705276 389867090 amyA Modestobacter marinus Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1.43209692 1.436187438 1.401424826 1.402560261 1.407957321 1.451280442 1.375709847 1.391164746 1.387955122 1.407961417 1.407834684 1.413006233 1.391673885 1.394977102 1.375401782 1.398960647 1.436121743 1.411093545 254466214 nirk Rhodobacterales bacterium Y4I Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 0.943463335 0.965650676 0.907130789 0.919887605 0.923878826 0.911782623 0.90602869 0.918217728 0.92459933 0.912017371 0.916987951 0.924899353 0.904060136 0.895987914 0.898132405 0.911163461 0.932527163 0.902561641 344318444 amyA Streptomyces sp. SirexAA-E Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.95315297 0.939365452 0.875794777 0.959012952 0.855084003 0.958262284 0.902474633 0.938520749 0.940610388 0.938630061 0.858587146 0.90514044 0.835942008 0.951030535 0.864261513 0.907818349 0.933742412 1.004076003 328879314 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 0.809263018 0.808731109 0.851601335 0.817560764 0.830817971 0.90717107 256729734 mer Nectria haematococca mpVI 77-13-4 Metal Homeostasis Mercury Detoxification superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 1.006024942 0.893065049 0.9235561 1.158877891 0.934808239 0.970110497 0.957242675 0.897771858 0.920002688 0.902921194 0.960907861 1.002768588 0.854735038 0.858151067 0.825206671 0.937943915 0.929255842 76557515 urec Natronomonas pharaonis DSM 2160 Nitrogen Ammonification NA superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 1.219775056 1.166848618 1.152262432 1.180018772 1.14262168 1.169060756 1.136356439 1.158335476 1.184728841 1.122090266 1.123435555 1.141342145 1.113828986 1.100287483 1.086895085 1.121472349 1.181172572 1.139618539 306527527 arylest Dickeya dadantii 3937 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 0.98572236 0.945219483 0.987855937 1.004554161 0.941152318 0.949574285 0.958398282 0.954368141 1.029906476 0.922191932 0.937109993 0.943219747 0.910378652 0.872134814 0.863512481 0.972477379 1.010636981 0.985487351 317053620 amyA Pantoea sp. At-9b Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 0.862182817 0.861465521 350528177 cysI Candidatus Burkholderia kirkii UZHbot1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Candidatus Burkholderia kirkii; 1.305045896 1.254477153 1.267526957 1.288950446 1.269942356 1.270465595 1.274361386 1.275082415 1.264645998 1.256128012 1.272848399 1.286707237 1.238367106 1.207253614 1.227164386 1.229007526 1.271595636 1.233369258 163747024 TIM Oceanibulbus indolifex HEL-45 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 1.034462294 1.045773084 1.057942686 1.035680949 1.023374419 1.069341445 1.030487886 1.0472103 1.02403529 1.004363312 1.01753287 0.993286236 0.9906178 0.934852367 0.96378003 0.999275554 1.017187605 1.063492287 294970658 gdh Brevibacterium mcbrellneri ATCC 49030 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium mcbrellneri; 0.904482849 0.888074093 0.825354231 0.903162237 0.805765358 0.856137267 0.881018792 0.891978747 0.877558284 0.823059312 0.813670734 0.829247545 0.84754868 0.92531061 0.913917158 315588568 amyA Intrasporangium calvum DSM 43043 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 1.038512398 1.043408594 1.024944561 1.013885513 1.058153282 1.064579289 0.985982044 0.988241235 1.01266441 1.033895408 0.9893025 1.011612873 1.005910418 0.994297814 0.998034434 0.984475983 1.035202283 1.041303227 260452426 amyA Streptomyces flavogriseus ATCC 33331 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 0.930380884 0.944788893 0.915316097 0.938583839 0.986667911 0.972023661 0.971166239 0.923260891 0.943241498 1.062018931 1.015664393 0.952640646 0.994004066 0.992149009 0.933710908 0.948249006 0.947147834 0.998271451 237858237 GAPDH_Parabasalia Joenia annectens Other Phylogenetic NA superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Joenia; 0.992869265 0.97844527 1.010317017 1.007211795 1.014471163 0.968565635 0.99537017 0.949832339 1.054667003 1.053811415 1.006994599 0.959743771 0.991542642 0.944045024 0.945739037 1.018069758 0.974594499 0.966194684 157146457 endochitinase Citrobacter koseri ATCC BAA-895 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 0.924334251 1.012183292 0.871587603 0.933539498 0.861022322 0.927625512 0.810752412 0.845099377 0.873605354 0.921674169 0.90203722 0.905133862 0.852763868 0.882981902 0.868667631 0.909953601 0.918727747 0.933152699 107022981 badi Burkholderia cenocepacia AU 1054 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 1.094371158 1.132055588 1.095441632 1.122603445 1.108896437 1.091678643 1.062997262 1.079355878 1.09101702 1.067105223 1.069875853 1.115939444 1.102590291 1.043699596 1.055102638 1.091880198 1.111015585 1.080102717 229610695 dsrB uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.826533467 0.800591135 0.826817833 0.832021916 0.853589038 0.845803457 0.831478215 0.80654791 0.836546515 0.837897971 0.784723913 0.83923089 0.856720537 169867023 axe Coprinopsis cinerea okayama7#130 Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 0.797417753 0.808259568 0.805761457 0.807161326 0.79702715 0.829625643 87286584 amyA Blastopirellula marina DSM 3645 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 0.82826061 0.796954776 0.84585476 0.848107134 0.878630332 0.789827626 0.834458302 0.881599438 0.853159336 294629486 acetylglucosaminidase Streptomyces sp. e14 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.760248935 0.804110612 145017599 tfth Magnaporthe grisea 70-15 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1.201157004 1.17066834 1.165608618 1.188931803 1.176266475 1.207813404 1.18020662 1.189316043 1.159088917 1.17349089 1.156414936 1.189727902 1.156773215 1.136496773 1.119781185 1.147751514 1.183648965 1.176107754 386419647 arylest Thiothrix nivea DSM 5205 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 0.960139337 0.88058634 0.959410137 0.99132124 0.828966323 0.925683231 0.874960471 0.899069028 0.949102453 0.910399273 0.881303745 0.910653708 0.872009542 0.863193622 0.877551555 0.905234154 0.988873768 0.885208504 259502938 narg Lactobacillus antri DSM 16041 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 1.126356529 1.112453108 1.064996146 1.120712834 1.055760324 1.132256787 1.127561779 1.073161882 1.08484023 1.110357728 1.089963257 1.098775363 1.044286614 1.078677736 1.053079466 1.160037627 1.13078611 1.100740553 295837010 vgb Streptomyces sp. SPB74 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 0.85865262 0.866436582 0.829919175 0.875339373 0.869183907 0.844755061 0.864752681 0.883092417 0.867418732 0.821569151 0.881525759 0.875706668 0.860123212 0.813804776 0.883010364 0.835970739 0.869544408 76666801 APS_AprB uncultured sulfate-reducing bacterium Sulfur adenylylsulfate reductase NA superkingdom:Bacteria; 0.939545559 0.871080714 0.895458561 0.954197691 1.023834683 0.894971032 0.956362913 0.820196082 0.939110722 0.92084727 0.868988838 0.984630516 0.896831289 0.901221484 0.903224246 0.951332086 0.858862369 0.878803537 149812604 phn Roseobacter sp. AzwK-3b Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.999346241 1.111165698 0.999386482 1.055159305 1.034740042 1.037366995 0.994041763 1.012880256 0.984102783 0.999081964 0.976011055 0.985199341 0.998566449 1.020027866 0.996396845 0.992059518 1.036095145 1.083184473 315313634 amyA Actinomyces sp. oral taxon 180 str. F0310 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 1.144202829 1.137286599 1.058214991 1.105723486 1.047581049 1.10832088 1.056080961 1.08247014 1.072791072 1.101600605 1.090556632 1.058509302 1.048565316 1.074073114 1.02088246 1.066389737 1.111414842 1.124511415 297552875 ppx Ktedonobacter racemifer DSM 44963 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 1.552499131 1.495319132 1.506119356 1.499565331 1.473361414 1.465682015 1.472174781 1.47930846 1.503657715 1.448311356 1.458875112 1.498738897 1.429589933 1.393687033 1.433964688 1.443986838 1.506025564 1.464947037 145220951 cysJ Mycobacterium gilvum PYR-GCK Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.257681704 1.265135736 1.254234135 1.239865163 1.206690471 1.261424297 1.193988679 1.222508716 1.241213755 1.244541834 1.222137548 1.20735153 1.18568514 1.220741068 1.189008966 1.214047256 1.247522755 1.26288333 329849567 poba Asticcacaulis biprosthecum C19 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 1.364055786 1.352296934 1.359971564 1.348385742 1.332079821 1.366019751 1.328857289 1.35262799 1.315627212 1.300094277 1.339097378 1.332222581 1.309446469 1.284011521 1.342486638 1.32079699 1.326466772 1.294520439 89075780 B_lactamase_A Photobacterium sp. SKA34 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 0.798209635 0.816758953 0.795730485 284181765 cellobiase Penicillium decumbens Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 0.823276194 0.82772285 0.904142188 0.860260566 0.878052892 0.905315974 0.895053634 0.816311704 0.826400815 0.934946307 0.94089242 0.880511862 0.831105309 0.865060266 0.819044946 0.825724586 0.916866238 0.85954326 374667766 FBPase Burkholderiales bacterium JOSHI_001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 1.285710546 1.265587674 1.227225549 1.215059152 1.21552869 1.240662794 1.194332844 1.216777669 1.232535839 1.219897648 1.211655884 1.225448744 1.203265915 1.203917623 1.192446602 1.2042125 1.236044756 1.247980272 397726021 poba Rhizobium sp. AP16 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 0.791104484 0.785196006 0.834873655 0.854900791 0.826846166 374574466 cmci Bradyrhizobium sp. WSM471 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.856295178 0.859060602 0.839308945 0.907349009 0.83845899 0.879214846 0.831227188 0.818394377 0.852031174 0.900836009 0.858031642 0.862308967 0.879728654 0.86675507 0.833673587 0.883517851 0.920338857 0.900374055 111026488 CsoS1_CcmK Rhodococcus jostii RHA1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.362875311 1.33147821 1.291529597 1.29061892 1.297428604 1.372447244 1.282121273 1.303139107 1.298002214 1.275201052 1.308043444 1.29107578 1.293984248 1.284111884 1.280008713 1.328102031 1.376577059 1.315221342 347578453 arsc Gluconacetobacter xylinus NBRC 3288 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 1.273054648 1.277968174 1.250809436 1.31603022 1.259342943 1.344890445 1.26866139 1.248526573 1.274677024 1.250326466 1.250502514 1.285822656 1.240968568 1.238772707 1.242653703 1.269553501 1.278913419 1.224709262 11139540 ppk Mycobacterium ulcerans Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.374419414 1.339605378 1.328041271 1.348099822 1.296861127 1.347433958 1.254774557 1.305293509 1.329641616 1.319982255 1.305441092 1.34252352 1.295985478 1.307438687 1.276192792 1.29340801 1.351011413 1.289732053 294637680 nrfa Edwardsiella tarda ATCC 23685 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 0.820858781 0.877134491 0.909616828 0.874077452 0.858551044 0.83937618 0.830006576 0.815416397 0.796736464 0.852104418 0.807896987 0.865981183 0.858471483 0.844173354 0.840101234 0.847112284 0.83449659 116700520 dsra Syntrophobacter fumaroxidans MPOB Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 0.804787498 0.815364433 0.848912946 0.823726153 0.764487876 0.849420439 147886064 phenol_oxidase uncultured bacterium Carbon Cycling Carbon degradation Lignin superkingdom:Bacteria; 1.022235126 1.073738759 0.973850297 1.016132601 1.016025308 1.069826611 1.019157741 1.025044917 1.056996603 1.030420946 1.017864042 1.034436777 0.995304997 1.020099833 0.987064833 0.999851712 1.007833284 1.048977677 169793464 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.023563427 1.001569706 1.087469744 1.045937695 1.023245965 0.963872478 0.981368887 0.985781707 1.030953711 0.962954849 0.96593371 0.972188748 0.956068467 0.935386701 0.962269615 0.906493224 1.037083811 0.928748331 160882868 nrfa Bacteroides ovatus ATCC 8483 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 0.825441531 0.840775494 0.815069004 0.853678203 0.875010807 0.869325751 0.851862166 0.87189823 0.834672145 0.815069964 0.845336634 0.919730412 365886117 exaa(moxf) Bradyrhizobium sp. STM 3809 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 0.802649331 0.818997008 0.804585217 0.785383252 0.911931277 0.794276866 0.837932844 0.881438043 0.792885111 0.822582535 345636499 amyA Streptomyces zinciresistens K42 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 1.193139102 1.266803509 1.21821711 1.142404502 1.137378449 1.222669292 1.110658227 1.12817688 1.161697533 1.185835307 1.174365502 1.170504129 1.140278187 1.14905424 1.162924415 1.133720322 1.183285468 1.2135531 296453292 amyA Bifidobacterium longum subsp. longum JDM301 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 0.811842328 0.877315873 0.801330953 0.880781465 0.901674546 0.910117216 0.829145437 0.882084454 0.836589861 0.845177994 0.865769107 0.821453829 0.857799112 403647712 chne Gordonia sp. KTR9 Organic Remediation Other Hydrocarbons NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 0.99508581 0.961313629 1.011595204 0.997176355 1.014976317 1.025241106 1.010393994 1.002811924 0.993107079 0.975088237 0.961917344 0.98129737 0.964151385 0.919382485 0.93956151 0.914756929 0.993713005 0.990056566 5830487 cdh Rhodococcus erythropolis Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.905907599 0.937694815 0.929374066 0.980143569 0.920138188 0.961817906 0.88818974 0.920971865 0.920257487 0.950687629 0.893241922 0.947823347 0.904181613 0.927127045 0.88796702 0.951865441 0.938396397 0.9107836 126249699 aoxb Pyrobaculum calidifontis JCM 11548 Metal Homeostasis Arsenic Detoxification superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 0.828292015 0.829690153 0.866191844 0.837379051 0.849986213 0.906620843 0.840883303 0.800999826 0.850703147 0.883210766 0.885527121 0.900942383 0.766866043 0.864494235 0.833258113 0.828618977 0.836194052 33391359 nosz uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.079655235 1.154004222 1.064134398 1.067243797 1.027989816 1.060835083 1.017629421 1.031133838 1.056485857 1.051718516 1.010763895 1.054953172 1.007576297 1.039744386 0.993011433 0.995002804 1.039887622 1.059903258 90335180 hbh Aurantimonas sp. SI85-9A1 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 0.804540732 0.814297344 0.874809069 0.830975098 0.867595831 0.828019647 0.852601688 0.851042867 0.893085437 0.886485477 0.821992006 0.83490781 0.877087821 385277748 bphF1 gamma proteobacterium BDW918 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.989626252 0.959962579 0.954287381 0.956405218 0.951500178 0.926119084 0.893988873 0.918182098 0.954904065 0.901931731 0.928962138 0.942423849 0.922579924 0.842479031 0.889104325 0.880803314 0.955877796 0.873638621 212673480 phn Desulfovibrio piger ATCC 29098 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 1.303269034 1.241119548 1.269370705 1.282512597 1.230221302 1.273472549 1.2259367 1.263031789 1.270384696 1.244274756 1.238469274 1.256201776 1.225874814 1.240725988 1.219058542 1.233932487 1.272378348 1.2439925 84685017 ben_bcla Maritimibacter alkaliphilus HTCC2654 virulence NA NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 1.492979659 1.445636074 1.449703292 1.44598123 1.425215004 1.458335311 1.428450493 1.45179098 1.429851941 1.413136964 1.429871291 1.453727215 1.400990957 1.400383208 1.423855318 1.436463235 1.437795126 1.394055373 315604618 amyA Actinomyces sp. oral taxon 180 str. F0310 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 0.966227594 1.03131297 0.982009527 0.959797816 0.976333021 0.983548849 0.921529006 0.941585663 0.857867689 0.938956606 0.921077692 0.937676083 0.923806966 0.883217752 0.906458002 0.921918211 0.986476556 0.990546377 340619916 xylanase Zobellia galactanivorans Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 1.126160615 1.088446932 1.093665132 1.123402828 1.102499032 1.107710696 1.092271915 1.107402225 1.09595465 1.104656595 1.068746996 1.162675068 1.079323757 1.096746045 1.065813186 1.094919956 1.068018582 1.092999482 99037234 tktA Ruegeria sp. TM1040 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.960980817 0.954339911 0.904577512 0.929147268 0.950950043 0.965584393 0.943901694 0.902798137 0.882794729 0.922710029 0.934923078 0.938535473 0.923992161 0.960744438 0.897428026 0.918852424 0.961876571 0.968352311 378824211 tktA Sutterella parvirubra YIT 11816 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 1.012774813 0.985328055 0.939883096 1.011618562 0.960378577 0.991517399 0.949225307 0.975786084 0.995538467 0.975015059 0.943995138 0.9566314 0.945855897 0.95575147 0.930000605 0.922694282 1.032276862 0.992916706 281357326 heparinase Victivallis vadensis ATCC BAA-548 Carbon Cycling Carbon degradation Heparin superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 1.1283095 1.072878193 1.072522323 1.104782948 1.080652684 1.107854269 1.073390026 1.085025106 1.073252637 1.074540123 1.097052295 1.073315241 1.051230057 1.040959737 1.004630508 1.040391464 1.106331056 1.095688098 353207564 SoxC Hyphomicrobium denitrificans 1NES1 Sulfur Sulfur Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 0.909702986 0.899286973 0.914177141 0.905312354 0.90530941 0.895197059 0.886369346 0.885575065 0.913685863 0.89514261 0.921222153 0.868453227 0.869994737 0.847484087 0.817663494 0.809432043 0.919038029 0.894526186 121605510 PRI Polaromonas naphthalenivorans CJ2 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 0.946500674 0.877848543 0.924719131 0.962310796 0.88044593 0.868487733 0.892596422 0.918359995 0.933735581 0.856494805 0.871188291 0.896969185 0.874844084 0.887060386 0.829822411 0.868101048 0.93426248 0.894517896 407788360 phn Celeribacter baekdonensis B30 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 0.943925896 0.905293234 0.943272016 0.91181893 0.923692282 0.921551612 0.915576384 0.912374028 0.940166191 0.933822904 0.926502219 0.910999463 0.908166268 0.880971654 0.916598676 0.935995535 0.919698942 0.925267669 377563408 bphc Gordonia sputi NBRC 100414 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 0.877757272 0.964323018 0.873536205 0.875402458 0.914733073 0.946504315 0.904498594 0.873861713 0.884330628 0.986300183 0.911731466 0.922134725 0.896916564 0.932000156 0.844539725 0.958581396 0.906953929 0.958826885 329296030 cysJ Plautia stali symbiont Sulfur Reduction NA superkingdom:Bacteria; 0.82822894 0.884436599 0.834157335 0.814241787 0.854449577 0.841212751 0.821886037 0.814117551 0.879128166 0.816769491 0.781794054 0.837639517 126035057 phenol_oxidase uncultured fungus Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi; 0.869442779 0.857855862 0.827743621 0.853057917 0.877474981 0.893040502 0.885847123 0.880976244 0.905430096 0.901516241 0.871326074 0.899239244 0.872809156 0.848138019 0.849433081 0.904280941 0.873006492 0.892617246 89145062 ppk Microbacterium arborescens Phosphorus Polyphosphate synthesis NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 0.837669449 0.766101168 227339893 amyA Sinorhizobium fredii NGR234 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 1.296623328 1.255211635 1.275012002 1.269868582 1.258367605 1.310021978 1.251370894 1.258410098 1.271222521 1.267435537 1.263884492 1.280450925 1.246002368 1.29815038 1.262794683 1.261237883 1.302698762 1.269915215 403200630 alkk Gordonia rubripertincta NBRC 101908 Organic Remediation Others NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 0.934060625 0.93906722 0.895854305 0.951225742 0.942092766 0.986097207 0.907954405 0.945979916 0.930786171 0.956751935 0.911437444 0.934579831 0.913648963 0.958330772 0.889064366 0.878506988 0.968199234 0.981902063 169117870 mer uncultured organism Metal Homeostasis Mercury Detoxification 1.269506549 1.200934405 1.252357751 1.236131499 1.251649518 1.209596489 1.19361856 1.213410035 1.221287821 1.205568077 1.270772599 1.257396363 1.238582472 1.17044275 1.240690117 1.18380993 1.249536704 1.169383649 14524222 B_lactamase_A Sinorhizobium meliloti 1021 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 0.768154187 0.805701588 0.794669938 0.788686645 0.831765685 158523550 dsra uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.229312528 1.161068379 1.170607924 1.179477841 1.170494164 1.16336254 1.182009248 1.195396969 1.186357994 1.142503523 1.161700681 1.21496141 1.172475892 1.109306547 1.150423782 1.191674437 1.217676042 1.115040891 149196318 nrfa Lentisphaera araneosa HTCC2155 Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 0.779524617 0.835021774 0.843167807 0.813452459 0.801953759 0.805607757 0.814671505 0.773822859 0.857649057 339835192 CsoS1_CcmK Acidithiobacillus sp. GGI-221 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 0.902674822 0.877237007 0.882229674 0.92472288 0.882368909 0.892292577 0.885623989 0.834945602 0.937138064 0.837133707 0.808425983 0.852026635 0.841996934 0.805455649 0.832296433 0.970810412 0.91945502 239910301 apu Thermococcus gammatolerans EJ3 Carbon Cycling Carbon degradation Starch superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 0.88645533 0.790569946 60476235 dsrB uncultured bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 0.843176951 0.894336547 0.907059273 0.826171056 0.852506886 0.863257696 284028820 merb Kribbella flavida DSM 17836 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 1.206534241 1.227387352 1.216465845 1.199393091 1.231453786 1.226804744 1.199986511 1.175110659 1.211793459 1.195002849 1.221957454 1.234214923 1.215104745 1.191701232 1.18496371 1.195029292 1.214846657 1.183252103 158316361 cdh Frankia sp. EAN1pec Carbon Cycling Carbon degradation Terpenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.236701135 1.211299265 1.192386236 1.214214229 1.188909237 1.226563324 1.195971893 1.194537098 1.19264853 1.188693871 1.176974524 1.197889284 1.188067614 1.143447649 1.172467062 1.166620947 1.231650093 1.192661199 60476050 rubisco uncultured bacterium Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria; 1.216391934 1.138696063 1.054538003 1.057035882 1.10989508 1.06509397 1.06918039 1.128570101 1.109778751 1.105631773 1.201567629 1.101901229 1.08910806 1.016640527 0.977606016 1.042072772 1.078359448 1.10322711 329948071 ppx Actinomyces sp. oral taxon 170 str. F0386 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 1.156394254 1.122427384 1.105098198 1.140661123 1.108495992 1.159586744 1.137305528 1.121647837 1.119343514 1.151709603 1.120598509 1.127493157 1.108535982 1.154099563 1.117709834 1.14270895 1.156456239 1.11972265 269306330 mdlc Xylanimonas cellulosilytica DSM 15894 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 1.120721079 1.115463612 1.079950645 1.101877058 1.09980354 1.130379228 1.078739058 1.087219889 1.07356366 1.064469305 1.059710416 1.084977424 1.067664374 1.092022665 1.043423324 1.066480564 1.113789611 1.099820006 148553455 phytase Sphingomonas wittichii RW1 Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1.193286408 1.192048775 1.188876784 1.163365862 1.169220651 1.202846027 1.147706062 1.164777332 1.147068576 1.16531827 1.164020034 1.175685209 1.156818626 1.153327446 1.132022543 1.163872569 1.179900023 1.191964743 69153892 rubisco Paracoccus denitrificans PD1222 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 0.875880803 0.862246474 0.88953281 0.861229013 0.872468395 0.884743019 0.860012048 0.854628859 0.811626072 0.875307546 0.827311974 0.87609641 0.817468029 0.831659003 0.866453515 0.906623851 0.917687318 302405709 cutinase Verticillium albo-atrum VaMs.102 Carbon Cycling Carbon degradation Cutin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1.392348445 1.335219116 1.335013906 1.380727327 1.309538803 1.350628842 1.312460177 1.334508031 1.340604001 1.32006798 1.3239636 1.346370611 1.298204846 1.300727872 1.306151906 1.337717031 1.361643721 1.296532024 50982474 pmoa uncultured bacterium Carbon Cycling Methane Methane oxidation superkingdom:Bacteria; 0.950165825 0.953306911 0.908171217 0.968740609 0.916408664 0.90598016 0.927649738 0.96151017 0.877285846 0.895606546 0.942217562 0.948533802 0.933512276 0.862663267 0.842880367 0.883421948 0.903146673 294477398 FBPase Rhodobacter capsulatus SB 1003 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 0.855998883 0.813654209 0.837088549 166064266 sqr endosymbiont of Ridgeia piscesae Sulfur Sulfide Oxidation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 0.981541048 0.970770464 1.0446346 1.000878662 0.977486665 1.079119738 0.993174081 0.99981525 1.00129021 1.024347904 0.962082074 0.945110674 0.971719065 0.957597211 0.950587661 0.993448285 1.037774076 0.98084253 110825324 ccmL Rhodococcus jostii RHA1 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1.040720037 1.008583226 1.055786006 1.091371031 1.039497518 1.062910177 1.090761415 1.070332461 0.99750602 1.018117311 1.032675408 1.053325802 0.980439706 1.010134667 0.951741004 0.994672001 1.024447009 1.035568751 260850330 mnp Phellinidium ferrugineofuscum Carbon Cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Hymenochaetales;family:Hymenochaetaceae;genus:Phellinidium; 0.921105106 0.860105888 0.911481604 0.951288955 0.860998593 0.909645181 0.879137371 0.885430507 0.969618359 0.876103799 0.892059718 0.924480399 0.876597256 0.877128502 0.840674087 0.847148399 0.922306748 0.895149563 119879899 cellobiase Salinispora arenicola CNS205 Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 1.093088266 1.086996342 1.043270599 1.086457407 1.034749566 1.057534703 1.020290559 1.077268831 1.089912692 1.059702558 1.02795123 1.059829673 0.996031219 1.049762432 1.016386967 1.008505045 1.055078354 1.069403175 357582439 ara Desulfovibrio sp. FW1012B Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 0.875759989 0.840527181 0.874787901 0.861161997 0.871592215 0.849335052 0.897961277 0.897924324 0.83920348 0.833775365 0.830799216 0.853114349 0.832623493 0.799046984 0.874126688 0.849054195 404441825 tfda Mycobacterium vaccae ATCC 25954 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 0.844591851 0.959857328 0.864036409 0.813810384 0.845183845 0.813740193 0.820552139 0.80815007 0.769022852 0.832829077 0.837193592 0.814227693 0.901066831 0.794556352 0.799312678 0.855396076 298544349 PRK Gloeobacter violaceus Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter; 1.017747968 1.021049438 0.952078138 1.013611809 1.013587312 0.963410216 1.061112803 1.017376461 1.039058345 0.988010537 1.002058589 1.021065559 0.971049124 0.952744975 0.872228562 0.961650036 0.982568346 1.026669189 315182493 pectinase (pectate_lyase) Vibrio furnissii NCTC 11218 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 0.851480844 0.932272279 0.800403179 0.859256031 0.824108378 0.813440891 0.813056171 0.799956209 0.853392414 0.830371108 0.789332677 0.880069175 150028866 TIM Sinorhizobium medicae WSM419 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 1.274615344 1.285938687 1.2982371 1.308263772 1.298062064 1.314497619 1.292236769 1.29104189 1.296304433 1.281993002 1.295974924 1.304405452 1.277855538 1.252217139 1.252553957 1.266170289 1.270466177 1.262178726 145283012 PEPC Pyrobaculum arsenaticum DSM 13514 Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 0.936889371 0.933935363 0.874875655 0.926822071 0.948173174 0.898292832 0.994787585 0.945649428 0.975295534 0.916745758 0.938179984 0.926270931 0.90764845 0.828433042 0.862489915 0.796329962 0.872674607 0.876641801 209486129 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.995022054 0.974836417 1.021713481 0.993476764 1.001349273 1.004165381 0.987025678 0.950997903 0.978711209 1.04881212 1.017213418 0.974611825 0.966168439 0.99877112 0.888471533 0.971718718 0.986879124 0.993223596 385664631 catechol Streptomyces tsukubaensis NRRL18488 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 0.829805532 0.884528469 0.850221054 0.83461045 0.857216543 0.828755465 0.794776604 0.84020399 0.809581734 0.834689347 0.851271606 0.904003324 390626826 cmua Desulfomonile tiedjei DSM 6799 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile;species:Desulfomonile tiedjei; 0.766433436 0.807535216 0.818699414 0.794320055 121553433 exaa(moxf) Verminephrobacter eiseniae EF01-2 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 0.946964946 0.869819533 0.84149433 0.883749214 0.964692306 0.899329835 0.942653568 0.884902398 0.860888411 0.890939651 0.956484648 0.918559612 0.909353107 0.864032048 0.926109853 0.895939129 0.897073832 0.891974541 226187380 bphd Rhodococcus erythropolis PR4 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 0.993422572 1.035070751 0.932321286 0.967115115 1.018280641 1.016186997 0.967998785 0.976898508 0.995730727 1.064019793 0.897741042 0.984337787 0.96686327 1.020860727 1.034892299 0.949412107 1.060152484 1.031004016 333486238 cutinase Mycobacterium sp. JDM601 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 1.208095835 1.193541383 1.15415757 1.155160996 1.168635471 1.175668102 1.184640041 1.143786186 1.142559202 1.215091781 1.18043811 1.16438547 1.159962871 1.156456958 1.112802345 1.136661139 1.167544627 1.177737091 116075361 CsoS2 Synechococcus sp. RS9916 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.994115499 0.985759948 1.003726873 1.020630346 0.984626513 0.978511093 0.957514477 0.983536176 1.014410217 0.973591571 0.959719979 0.9923345 0.972003268 0.943890679 0.974911218 0.954585236 1.057355613 1.007216356 225041317 ppx Clostridium asparagiforme DSM 15981 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 1.094124399 1.033274275 1.075482577 1.095720214 1.023939863 1.001101838 1.01008874 1.042571069 1.07542303 1.055899742 1.050190788 1.081454196 1.019477901 0.995754239 1.057919146 1.027775116 1.065607575 1.034716604 402698363 pcag Pseudomonas fragi A22 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fragi; 0.759528451 0.789414037 0.794014186 0.788629067 0.854598085 0.828336123 54018042 nirb Nocardia farcinica IFM 10152 Nitrogen Assimilatory N reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 0.954756301 0.94414267 0.962768435 0.899505653 0.833110736 0.845174499 0.880545766 0.838955763 0.936403511 0.930467559 0.877797976 0.87354968 0.837427402 0.860575953 0.832279155 0.844526965 0.961483277 0.965878955 407251919 atzd Alcanivorax dieselolei B5 Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 0.848024601 0.905217531 0.869666546 0.920873876 0.885122961 0.934287356 0.902379977 0.87683865 0.926331202 0.922467362 0.960909752 0.947315846 0.908199857 0.899118717 0.911526572 0.898041268 0.919462841 0.947035711 225568883 amyA Clostridium hylemonae DSM 15053 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 0.838996567 0.918267816 0.780044067 0.915352825 0.925441668 0.845225789 0.859763933 312195272 tfda Frankia sp. EuI1c Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1.036249651 1.017378644 1.025135024 1.04997552 1.016703872 1.022640676 1.00476506 0.998971333 1.027377253 0.996974942 1.038759284 1.021528736 0.98914592 0.945181868 0.953612254 0.973044286 1.015842889 0.987429604 402212570 catechol Pseudomonas putida S11 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1.06088273 1.054849566 1.055024695 1.079807169 1.036952233 1.054158522 1.049511794 1.061278075 1.047289086 1.050569511 1.056604 1.047215505 1.044908674 1.025005718 1.034083115 1.048063108 1.073485166 1.032390644 333937978 ppx Novosphingobium sp. PP1Y Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 0.975636536 1.040494064 0.925828463 0.937770122 0.964787879 1.023540241 0.943130917 0.938256047 0.925949424 1.012856593 0.915003853 0.983453543 0.96672537 0.959574059 0.904129946 0.966228545 0.953785584 1.005467578 126738786 FBPase Roseobacter sp. SK209-2-6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 0.988420615 0.960916 0.96701694 0.973813872 0.975935927 0.968829219 0.876881324 0.965041061 1.036359078 0.944027633 0.926816727 0.916471394 0.844400843 0.887151677 0.869608178 0.894324689 1.00024558 1.005153385 226318817 gdh Deinococcus deserti VCD115 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 1.026123349 1.002295616 0.991635465 1.038874889 1.023053161 1.007994441 0.994892738 1.005688155 1.028964619 1.011360569 1.004827626 1.004855676 0.981425826 0.951114578 0.946699809 0.937189447 1.024292065 1.001835799 40804948 phn Pseudomonas stutzeri Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 0.748835705 0.829513575 74038388 nirs uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.750312768 0.784940242 0.754698724 0.816255336 119875513 nbac Stenotrophomonas maltophilia R551-3 Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 0.930694156 1.07142539 0.859334129 0.938376421 0.859690256 0.926241021 0.867917853 0.872821091 0.93989606 0.886187708 0.859569274 0.890267944 0.84908706 0.886348662 0.86261378 0.943004071 0.994796952 90954635 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.206744579 1.186540622 1.191522781 1.210333957 1.194655864 1.213118747 1.166812958 1.145685744 1.208812201 1.164724088 1.15596345 1.161983386 1.102330692 1.107580312 1.094060594 1.12976424 1.211591637 1.199731557 317485454 urec Bilophila wadsworthia 3_1_6 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila;species:Bilophila wadsworthia; 1.380104175 1.32767121 1.290480135 1.342452219 1.268049586 1.330875375 1.308081779 1.314572824 1.302026953 1.277326117 1.281275618 1.290585197 1.263898935 1.306976064 1.219762483 1.290078692 1.318489259 1.30460817 219858049 urec Arthrobacter chlorophenolicus A6 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 0.99573126 1.106006796 0.955128701 0.970263811 1.055903478 1.032284538 0.991735904 0.99202388 0.844869905 0.942149574 0.939488175 0.933763096 0.979156537 0.988849309 0.908381387 1.050260612 0.973386192 1.061378891 119391655 narg Rhodococcus sp. D6-28 Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 0.984613771 0.974735896 0.96832932 0.986840175 1.001724819 0.97325979 0.935282811 0.901894432 0.928320149 0.947774579 0.922692998 0.968308956 1.000500974 0.940185705 0.91223222 0.966074856 1.013357708 0.975604632 319925415 acetylglucosaminidase Terriglobus saanensis SP1PR4 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 0.85812751 0.852639598 0.882031749 0.878224996 0.88421549 0.79563332 0.822244824 0.863483047 0.818812952 0.818680503 0.821164827 0.825962446 0.871103972 0.815979686 0.825880713 0.862500059 0.888660487 315226393 ppx Parascardovia denticolens DSM 10105 = JCM 12538 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 1.077274226 1.076369373 1.054740952 1.053445657 1.042618488 1.07531623 1.078835491 1.029921971 1.045744371 1.082010534 1.0520297 1.058741689 1.068872205 1.056523685 1.046661578 1.02935848 1.058070162 1.04761743 297549894 mer Ktedonobacter racemifer DSM 44963 Metal Homeostasis Mercury Detoxification superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 0.880310516 0.898161687 0.87704322 0.917267375 0.920162185 0.842712349 0.872627927 0.956558357 0.92822342 0.870928463 0.891358357 0.905365516 0.859548078 0.869882972 0.844814231 0.83040031 0.8662608 0.90350139 84510386 urec Loktanella vestfoldensis SKA53 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 1.120056597 1.092357656 1.086583658 1.096118018 1.127443811 1.089647607 1.135453258 1.102022608 1.117228322 1.097939231 1.037508573 1.15206604 1.096759732 1.130473433 1.09388062 1.137545827 1.081379297 1.121125286 325538715 exaa(moxf) Xanthomonas vesicatoria ATCC 35937 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 0.977247848 0.957315203 0.961806184 1.008072143 0.95204109 0.955018612 0.938130811 0.977712412 0.983998857 0.967618904 0.956470217 0.960684724 0.958334797 0.919456641 0.912479749 0.950442411 0.993405538 0.952883561 342859937 cutinase Mycobacterium colombiense CECT 3035 Carbon Cycling Carbon degradation Cutin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 0.783757361 0.824755546 0.833738913 0.807249625 375058029 fcba Rhizobium sp. PDO1-076 Organic Remediation Aromatics Chlorinated aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1.050014081 1.076373688 1.005744274 1.035334093 0.996822387 1.015974369 1.010185336 1.015022121 1.028562595 1.03125424 0.97962317 1.009829418 0.969212823 1.009888642 0.963677049 0.975586171 1.051469766 1.091080123 37726850 dsrB uncultured prokaryote Sulfur sulfite reduction NA 0.985293779 0.958995494 1.000020111 0.995116553 0.90014917 0.960319659 0.943716071 0.968819993 0.950050204 0.993786619 0.907160112 0.978895864 0.898344555 0.942883158 0.834495159 0.93132084 0.963736107 0.992182479 288344444 bphF1 Frankia sp. EUN1f Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 0.840631244 0.887967238 0.820783144 0.83598753 0.880801511 0.834344135 0.810360959 0.807198406 0.807248462 0.827113067 0.836750606 0.826719147 0.841234713 0.876230975 0.894781523 119376651 arsc Paracoccus denitrificans PD1222 Metal Homeostasis Arsenic Detoxification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 1.023903302 1.011122287 0.999491867 1.079100771 1.011113406 1.02210715 0.985904633 1.03301074 1.031827132 0.986301451 0.966329525 1.050935238 0.991479812 0.981212146 0.959757494 1.018028128 1.078165355 0.981215092 390573624 mdla Burkholderia terrae BS001 Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 0.876070249 0.845294492 0.895858077 0.944429738 0.887892918 0.902526702 0.897322995 0.922404649 0.898470038 0.872700376 0.869544453 0.872500177 0.829061059 0.808510175 0.804888331 0.881483752 0.858169987 99080052 b_lactamase Ruegeria sp. TM1040 Virulence Antibiotic resistance Degradation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 0.816852924 0.845726526 0.836282329 0.777901556 0.818470074 0.850775675 0.841910984 0.826702388 0.816353808 0.84046207 0.830160602 0.858850153 0.784772051 0.841269403 0.84742092 0.868006629 291005403 acetylglucosaminidase Saccharopolyspora erythraea NRRL 2338 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 1.268812141 1.161206334 1.174904641 1.19928968 1.227979595 1.198795744 1.185450747 1.206810753 1.198401516 1.177250184 1.203949954 1.209962728 1.176131132 1.144351246 1.150417157 1.165656862 1.200352743 1.167507186 311284389 pectinase (pectate_lyase) Pseudomonas fluorescens WH6 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1.049401519 0.992152419 1.053444396 1.011692083 0.969309718 1.025096432 0.987741702 1.028638026 1.023967444 1.024105945 0.992900049 0.993385434 1.00594126 0.97940547 0.948080837 1.038548033 1.030514331 1.021176606 359458005 CsoS1_CcmK Acaryochloris sp. CCMEE 5410 Carbon Cycling Carbon fixation Bacterial Microcompartments superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 1.039371473 0.9802531 0.983029891 1.027740356 1.043453412 0.990256027 1.019844987 1.103101067 1.015546569 0.98500941 0.988235021 1.003365731 1.008967258 0.955888539 0.972858982 0.999571325 1.026222369 0.966838458 26278906 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 1.066648029 1.007780659 1.014616744 1.015857733 0.97312418 1.048395021 0.993882495 0.962469445 0.998992703 1.003723794 0.987688267 0.992072286 0.965480836 0.966871036 0.967044197 0.977655755 1.036974931 1.00718126 253998188 fthfs Methylovorus glucosetrophus SIP3-4 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus;species:Methylovorus glucosotrophus; 0.800665441 0.815635897 0.891563998 0.896384208 0.874050296 0.825048759 0.822204123 0.876852596 0.806077541 0.812330128 0.825693745 0.813588664 0.862356306 3372159 nifh unidentified bacterium Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 0.909826633 0.835929415 0.922376474 0.977979987 0.915950652 0.885399582 0.92790146 0.927876206 0.907153262 0.906531524 0.899572128 0.938688305 0.899636419 0.858604378 0.844964783 0.919368085 0.875310553 192764460 narg uncultured bacterium Nitrogen Denitrification NA superkingdom:Bacteria; 0.990413787 1.059082436 1.037403669 0.972161643 1.067523128 0.957076131 0.98390494 0.962913519 1.038739552 0.97558805 1.033914938 0.959351584 0.968416219 0.940042318 0.99489921 0.968331441 1.043107526 338811699 fthfs Acetonema longum DSM 6540 Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 1.143337877 1.135388143 1.13396168 1.157510116 1.14866506 1.14944156 1.177233986 1.143381747 1.173908448 1.204543026 1.124244168 1.228968143 1.142533903 1.179497207 1.128094227 1.213636505 1.131038532 1.16483684 118171253 mhpa Mycobacterium smegmatis str. MC2 155 Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 0.750610197 0.818663257 0.820670395 0.82955809 340786915 tktA Collimonas fungivorans Ter331 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 1.051630231 1.025871395 1.035383102 1.047809261 0.994584429 1.033540824 0.992158982 1.028047557 1.055189644 1.009005856 1.019850036 1.017172875 0.97673055 1.018231788 1.038551985 1.034762063 1.043507585 1.043628613 338234961 tktA Bradyrhizobiaceae bacterium SG-6C Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 1.138360553 1.140179713 1.136922439 1.149092526 1.120447213 1.149529275 1.12638141 1.126006804 1.130275137 1.102152066 1.134401742 1.132466037 1.050590293 1.061647882 1.036181101 1.08277276 1.140327587 1.106959026 39985190 nrfa Geobacter sulfurreducens PCA Nitrogen Dissimilatory N reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 1.202938151 1.192283674 1.182456013 1.206110218 1.187709887 1.216892728 1.197596307 1.2009749 1.19529512 1.198509742 1.18193796 1.186075929 1.187353178 1.180049296 1.180191546 1.217919054 1.213386009 1.198554154 66474941 cmua uncultured bacterium Organic Remediation Chlorinated solvents NA superkingdom:Bacteria; 0.921279623 0.936851313 1.005186659 0.896288912 0.849934135 0.921048901 0.874036706 0.87845912 0.918877821 0.93873869 0.87501755 0.881628388 0.855428843 0.875268152 0.82766869 0.852878798 0.923666277 0.951231301 126703786 dmdA Rhodobacterales bacterium HTCC2150 Sulfur DMSP degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1.14866291 1.12601058 1.11971005 1.144075711 1.101234947 1.152531623 1.081974889 1.120459916 1.119715391 1.131309183 1.111909369 1.127237546 1.120893154 1.106974044 1.088493003 1.102853887 1.126420419 1.123614416 383802374 terc Ignavibacterium album JCM 16511 Metal Homeostasis Tellurium Detoxification superkingdom:Bacteria;phylum:Ignavibacteriae;class:Ignavibacteria;order:Ignavibacteriales;family:Ignavibacteriaceae;genus:Ignavibacterium;species:Ignavibacterium album; 0.889066047 0.864495271 0.880434065 0.967809888 0.888260423 0.822267564 0.914194197 0.92713666 0.841356078 0.898474691 0.929824459 0.856825954 0.827842898 0.881894434 0.858311171 0.907606358 0.833823598 339833994 FBPase Acidithiobacillus sp. GGI-221 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 0.821700547 0.791238504 0.849464084 0.885660612 0.851437229 0.852450606 0.814239067 0.862883558 0.851601484 0.832421791 219965663 dsra uncultured sulfate-reducing bacterium Sulfur sulfite reduction NA superkingdom:Bacteria; 1.185026047 1.168704301 1.15253033 1.176248131 1.13338551 1.173215369 1.148624305 1.174942573 1.143761604 1.140140001 1.135850254 1.15068369 1.113430521 1.10809844 1.092357954 1.127870935 1.162983562 1.165113154 281316683 ara Victivallis vadensis ATCC BAA-548 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 0.816272878 0.812356665 0.845918059 0.850428036 0.847121776 0.796587838 0.859102902 0.81284301 0.800466052 0.830692513 0.918390942 0.834938478 0.805318013 0.822878801 86280536 ppx Rhizobium etli CFN 42 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 0.79549251 0.847307387 0.781113662 0.816217278 0.765120457 0.885161408 118051441 urec Comamonas testosteroni KF-1 Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 0.896928999 0.910243053 0.904770891 0.897839405 0.85106707 0.893643223 0.866840526 0.8458167 0.844892419 0.859053306 0.891212167 0.834270749 0.865412233 0.85759792 0.85328992 0.906627198 0.930984663 300390440 fthfs uncultured bacterium Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway superkingdom:Bacteria; 0.897825879 0.896922961 0.86204882 0.936240646 0.829420495 0.841574448 0.887513761 0.88763596 0.90540362 0.876267284 0.947742018 0.806736917 0.855362714 0.837739467 0.901855111 0.832506825 359313809 cysJ Gordonia polyisoprenivorans NBRC 16320 Sulfur Reduction NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 0.953373967 0.960889915 0.927091961 0.968666754 0.922206315 0.953560691 0.892852844 0.920128019 0.979760378 0.95998035 0.915277405 0.925523701 0.891923505 0.933006703 0.831632879 0.909904899 0.974930648 0.988990473 320127769 dsra Geobacter sp. M18 Sulfur sulfite reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 0.874579065 0.816608124 0.849848336 0.861779901 0.858552708 0.827468566 0.885871643 0.882324437 0.872900934 0.808140005 0.858877091 0.802506549 0.872322945 0.897622373 119949602 ppx Arthrobacter aurescens TC1 Phosphorus Polyphosphate degradation NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 0.914172774 0.942274024 0.93747592 1.008068798 0.910855431 1.055808908 0.872719229 0.921004659 0.919558363 0.967565389 0.963217749 0.967906588 0.908658472 0.857855808 0.934481659 1.004591662 0.975014643 355335949 amyA Pseudoxanthomonas spadix BD-a59 Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 0.919292407 0.880783485 0.891439622 0.881058666 0.889133459 0.867011519 0.878192406 0.877616765 0.85636642 0.844992403 0.885878816 0.852077101 0.851143734 0.812363208 0.861945128 0.86116903 345643755 cysJ Pseudogulbenkiania sp. NH8B Sulfur Reduction NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania; 0.856008954 0.846554602 0.83723922 0.842456095 0.81277715 0.828194816 0.829704887 0.855963064 0.829924735 0.81472032 0.862294304 0.84657646 329848900 ara Asticcacaulis biprosthecum C19 Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 0.901982784 0.932297034 0.862598068 0.949294645 0.857079408 0.848629701 0.874011961 0.952671043 0.912283458 0.862709022 0.940185115 0.840475447 353193791 xylj Mycobacterium rhodesiae JS60 Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1.10928845 1.054650702 1.094724461 1.0484896 1.062066079 1.049846121 1.000266548 1.061382422 1.050913195 1.065196138 1.075508093 1.070519832 1.04931252 1.065621649 1.026577666 1.069679418 1.083991219 1.070573042 193996854 phytase uncultured bacterium Phosphorus Phytic acid hydrolysis NA superkingdom:Bacteria; 0.842595238 0.809981688 0.825540138 0.788495613 0.792263471 0.815963635 375105627 PRI Burkholderiales bacterium JOSHI_001 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 0.858258575 0.846257181 0.81268194 0.861816456 0.876756605 0.84833975 0.907483278 0.859361824 0.860456367 0.828094402 0.895435298 0.865060625 0.788891047 0.808155836 0.813519473 0.874386634 0.924689735 88643342 dsrB uncultured prokaryote Sulfur sulfite reduction NA 1.063021535 1.095078556 1.05957969 1.067925786 1.028487954 1.074806225 1.014280401 1.043986381 1.054960893 1.029850856 1.019367933 1.060456498 1.024994618 1.036048305 1.042098626 1.058989551 1.086034172 1.073617714 193876549 rd Dehalococcoides sp. MB Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;order:Dehalococcoidales;family:Dehalococcoidaceae;genus:Dehalococcoides; 0.832345478 0.846275061 0.823999105 0.833896609 0.82090032 0.829252208 0.827798718 0.861887636 0.837889731 0.814095307 0.850845566 148242001 endochitinase Synechococcus sp. RCC307 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 0.939478835 0.958252463 0.943346825 0.901913014 0.957433775 0.971492999 0.983897717 0.941864721 0.955712666 0.953099935 0.888713679 0.994769767 0.87774724 0.929726322 0.928301663 0.909109657 0.871071955 0.913301077 34104244 endochitinase Chromobacterium violaceum ATCC 12472 Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 0.762433207 0.815190714 0.814934439 0.805389897 148724107 one_ring_23diox bacterium B-358 Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.969509245 0.917186075 0.885324138 0.928274226 0.844701227 0.914682459 0.867934261 0.899903015 0.904647331 0.871277735 0.884210855 0.901670979 0.838415232 0.898569568 0.814753866 0.845600196 0.906585456 0.919444706 3157534 nifh unidentified nitrogen-fixing bacteria Nitrogen Nitrogen fixation NA superkingdom:Bacteria; 1.015965932 1.051891374 1.011838178 1.013687354 1.007144427 1.024833459 1.027293369 1.004182445 1.005043927 1.00054631 1.006628241 0.998107482 0.995049496 0.992497638 0.923978735 0.942704745 1.002071774 1.023226622 315444915 linb Mycobacterium gilvum Spyr1 Organic Remediation Pesticides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 1.050261393 1.064759705 1.059422773 1.042458166 1.034426041 1.062863109 1.028431412 1.084921764 1.029986993 1.0713683 1.016730288 1.049899302 1.01585465 1.042477792 0.958057068 1.025575209 1.041995824 1.070387113 151578 catb Pseudomonas sp. Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Proteobacteria; 0.899207981 0.882425019 0.870307139 0.928275257 0.86014841 0.906047489 0.854442926 0.906314975 0.917034616 0.868225767 0.86271497 0.868648634 0.824209839 0.894481949 0.810255216 0.870432103 0.890721449 0.909236594 255292040 catechol_b uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 1.00791901 1.154351241 1.005795625 1.111994575 1.115103284 1.094312159 1.100894411 1.013711318 0.998459517 1.065410325 1.056865451 1.043174074 1.07791634 1.044658889 1.020800201 1.035617985 1.008663341 1.050323761 3220207 endopolygalacturonase_fungi Aspergillus aculeatus Carbon Cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 0.911326367 0.836785474 0.864756973 0.923669542 0.927785969 0.888389123 0.910450193 0.832440762 0.857723049 0.899859005 0.902949445 0.922428433 0.893749432 0.864584132 0.870423558 0.86319372 0.842737652 0.812691569 308225478 FBPase Oscillochloris trichoides DG6 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 1.447437161 1.461669571 1.388982138 1.464716813 1.397754923 1.457514285 1.38386229 1.429667615 1.427278639 1.429095983 1.399581432 1.451955266 1.409793644 1.412097301 1.384808684 1.426043651 1.439288933 1.417986056 189206015 Sir Pyrenophora tritici-repentis Pt-1C-BFP Sulfur sulfite reduction NA superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 0.922654659 0.877983114 0.920833034 0.980720837 0.925644103 0.981098944 0.980179685 0.930340544 0.958637077 1.003499894 0.922616924 0.878482157 0.940958825 0.947271983 0.907123358 0.957314311 351683431 cysI Rhodanobacter sp. 2APBS1 Sulfur Other NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 1.063261909 1.044184754 0.999828323 1.064037684 1.027162849 1.065929404 1.076490585 1.073275777 1.038856146 1.030925062 1.042220254 1.066568755 1.049085025 1.018988431 1.054303219 1.066604338 1.063815944 1.032750061 323467931 rgl Arthrobacter phenanthrenivorans Sphe3 Carbon Cycling Carbon degradation Pectin superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 1.273150667 1.300560591 1.234565487 1.267156674 1.248911962 1.28027821 1.243006476 1.25454137 1.246104231 1.23267535 1.255832799 1.27307321 1.233017032 1.219718999 1.222913928 1.218524411 1.254779332 1.192030966 156523583 one_ring_12diox uncultured bacterium Organic Remediation Aromatics Other aromatics superkingdom:Bacteria; 0.853876295 0.884803724 0.921808216 0.886591465 0.902000564 0.896703297 0.895340114 0.899681039 0.884605326 0.915831761 0.914462788 0.864066038 0.835219203 0.862874345 0.880908711 0.909131704 119897685 TIM Azoarcus sp. BH72 Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 0.897707066 0.815154724 0.819889656 0.868589215 0.836771074 0.862082567 0.857701659 0.86865715 0.82948355 0.840889691 0.864837177 0.854030062 0.865198294 332970113 urec Psychrobacter sp. 1501(2011) Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 0.903333956 0.8297806 0.8864603 0.90689274 0.823469097 0.805146602 0.875997665 0.883259233 0.819797655 0.891545264 0.94587743 0.826782469 0.848277481 0.843003586 0.868152908 0.840901835 221633906 amyA Thermomicrobium roseum DSM