1. Decai Jin, Xiao Kong, Yujie Li, Zhihui Bai*, Guoqiang Zhuang, Xuliang Zhuang, Ye Deng*. Biodegradation of di-n-Butyl Phthalate by Achromobacter sp. Isolated from Rural Domestic Wastewater. International Journal of Environmental Research and Public Health, 2015, 12(10), 13510-13522 Read More
2. Jie Ma, Ye Deng, Tong Yuan, Jizhong Zhou, Pedro J.J. Alvarez*. Succession of microbial functional communities in response to a pilot-scale ethanol-blended fuel release throughout the plume life cycle. Environmental Pollution, 2015, 198,154-160
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3. Junjun Ding, Yuguang Zhang, Ye Deng, Jing Cong, Hui Lu, Xin Sun, Caiyun Yang, Tong Yuan, Joy D. Van Nostrand, Diqiang Li, Jizhong Zhou, Yunfeng Yang*. Integrated metagenomics and network analysis of soil microbial community of the forest timberline. Scientific Reports, 2015, 5, 7994-7803
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4. Qingyun Yan, Yonghong Bi, Ye Deng, Zhili He, Liyou Wu, Joy D. Van Nostrand, Zhou Shi, Jinjin Li, Xi Wang, Zhengyu Hu, Yuhe Yu*, Jizhong Zhou*. Impacts of the Three Gorges Dam on microbial structure and potential function. Scientific Reports, 2015, 5, 8605
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5. Jinbo Xiong, Zhili He*, Shengjing Shi, Angela Kent, Ye Deng, Liyou Wu, Joy D. Van Nostrand, Jizhong Zhou*. Elevated CO2 shifts the functional structure and metabolic potentials of soil microbial communities in a C4 agroecosystem. Scientific Reports, 2015, 5, 9316
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6. Ping Zhang, Joy D. Van Nostrand, Zhili He, Romy Chakraborty, Ye Deng, Daniel Curtis, Matthew W. Fields, Terry C. Hazen, Adam P. Arkin, Jizhong Zhou*. A slow-release substrate stimulates groundwater microbial communities for long-term in-situ Cr(VI) reduction. Environmental science & technology, 2015, 49(21):12922-12931
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7. Ping Zhang, Wei-Min Wu, Joy D. Van Nostrand, Ye Deng, Zhili He, Thomas Gihring, Gengxin Zhang, Chris W. Schadt, David Watson, Phil Jardine, Craig S. Criddle, Scott Brooks, Terence L. Marsh, James M. Tiedje, Adam P. Arkin, Jizhong Zhou*. Dynamic succession of groundwater functional microbial communities in response to emulsified vegetable oil amendment during sustained in situ U(VI) reduction. Applied and environmental microbiology, 2015, 81(12): 4164-4172
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8. Yuting Liang, Liyou Wu, Ian M. Clark, Kai Xue, Yunfeng Yang, Joy D. Van Nostrand, Ye Deng, Zhili He, Steve McGrath, Jonathan Storkey, Penny R. Hirsch, Bo Sun, Jizhong Zhou*. Over 150 Years of Long-Term Fertilization Alters Spatial Scaling of Microbial Biodiversity. mBio, 2015, 6(2):e00240-15
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9. Jing Cong, Xueduan Liu, Hui Lu, Han Xu, Yide Li, Ye Deng, Diqiang Li, Yuguang Zhang*. Available nitrogen is the key factor influencing soil microbial functional gene diversity in tropical rainforest. BMC Microbiology, 2015, 15:167
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10. Junjun Ding, Yuguang Zhang, Mengmeng Wang, Xin Sun, Jing Cong, Ye Deng, Hui Lu, Tong Yuan, Joy D. Van Nostrand, Diqiang Li, Jizhong Zhou, Yunfeng Yang*. Soil organic matter quantity and quality shape microbial community compositions of subtropical broadleaved forests. Molecular Ecology, 2015, 24(20): 5175-5185
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11. Jizhong Zhou*, Zhili He, Yunfeng Yang, Ye Deng, Susannah G. Tringe, Lisa Alvarez-Cohen. High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats. mBio, 2015, 6(1), e02288-14
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12. Qichao Tu, Mengting Yuan, Zhili He, Ye Deng, Kai Xue, Liyou Wu, Sarah E. Hobbie, Peter B. Reich, Jizhong Zhou*. Fungal communities respond to long-term elevated CO2 by community reassembly. Applied and Environmental Microbiology, 2015, 81(7): 2445-2454
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13. Yuguang Zhang*, Jing Cong, Hui Lu, Guangliang Li, Yadong Xue, Ye Deng, Hui Li, Jizhong Zhou, Diqiang Li. Soil bacterial diversity patterns and drivers along an elevational gradient on Shennongjia Mountain, China. Microbial Biotechnology, 2015, 8(4):739-46
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14. Yuting Liang, Yuji Jiang, Feng Wang, Chongqing Wen, Ye Deng, Kai Xue, Yujia Qin, Yunfeng Yang, Liyou Wu, Jizhong Zhou*, Bo Sun*. Long-term soil transplant simulating climate change with latitude significantly alters microbial temporal turnover. The ISME Journal, 2015, 9, 2561–2572
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15. Liyou Wu, Chongqing Wen, Yujia Qin, Huaqun Yin, Qichao Tu, Joy D. Van Nostrand, Tong Yuan, Menting Yuan, Ye Deng, Jizhong Zhou*. Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis. BMC Microbiology, 2015, 15:125
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16. Bo Yang, Xiao Kong, Bingjian Cui, Decai Jin, Ye Deng, Xuliang Zhuang, Guoqiang Zhuang, Zhihui Bai*. Impact of Rural Domestic Wastewater Irrigation on Physicochemical and Microbiological Properties of Pakchoi and Soil. Water, 2015, 7(5), 1825-1839
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17. Yuanyuan Qu*, Xuwang Zhang, Qiao Ma, Jie Deng, Ye Deng, Joy D. Van Nostrand, Liyou Wu, Zhili He, Yujia Qin, Jiti Zhou, Jizhong Zhou. Microbial Community Dynamics and Activity Link to Indigo Production from Indole in Bioaugmented Activated Sludge Systems. Plos One, 2015, 10(9): e0138455
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18. Christopher L. Hemme*, Qichao Tu, Zhou Shi, Yujia Qin, Weimin Gao, Ye Deng, Joy D. Van Nostrand, Liyou Wu, Zhili He, Patrick S. G. Chain, Susannah G. Tringe, Matthew W. Fields, Edward M. Rubin, James M. Tiedje, Terry C. Hazen, Adam P. Arkin, Jizhong Zhou*. Comparative metagenomics reveals impact of contaminants on groundwater microbiomes. Frontiers in Microbiology, 2015, 6:1205
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19. Xiaobo Wang, Joy D. Van Nostrand, Ye Deng, XiaotaoLü, Chao Wang, Jizhong Zhou, Xingguo Han*. Scale-dependent effects of climate and geographic distance on bacterial diversity patterns across northern China’s grasslands. FEMS Microbiology Ecology, 2015, 91(12)
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20. Catriona A. Macdonald, Michael J. Crawley, Denis J. Wright, Justin Kuczynski, Lucinda Robinson, Rob Knight, Waleed Abu Al-Soud, Søren J. Sørensen, Ye Deng, Jizhong Zhou, Brajesh K. Singh*. Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment. Environmental Microbiology, 2015, 17(3): 841-854
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21.魏子艳,金德才,邓晔*,2015.环境微生物宏基因组学研究中的生物信息学方法.微生物学通报，42（5）：890-901 Read More
22.张照婧,厉舒祯,邓晔,李会杰,李端行,刘紫嫣,王经伟,沈文丽,马桥,曲媛媛*,周集体,2015.合成微生物群落及其生物处理应用研究新进展, 应用与环境生物学报. 21(6): 981-986
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23.孔晓，崔丙健，金德才*，吴尚华，杨波，邓晔*，庄国强，庄绪亮，2015. 农村污水膜生物反应器系统中微生物群落解析，环境科学，36（9）：211-220 Read More
