Amplicon sequencing analysis

This analysis pipeline is suitable for high-throughput sequencing data analysis, focusing on amplicon sequencing data (16S rRNA, ITS, 18S rRNA and functional genes).
MENA/IDEN MENA/IDEN analysis pipeline is mainly for network analysis of metagenomic data. Not available for now
SDARG This pipeline is used for antibiotic resistance genes (ARGs) analysis based on the Sequence Database for ARGs (SDARG). The database was last updated in Dec 30, 2016. Both the nucleotide and protein sequences could be downloaded in the Shared Data, Data Libraries at the top of this page. It will keep updating annually, and the 2017 version would be avaliable recently!