Denglab Metagenomic Analysis Pipeline (DMAP)
This analysis pipeline is built and maintained by Deng Lab and it is suitable for high-throughput sequencing data analysis, focusing on amplicon sequencing data (16S rRNA, ITS, 18S rRNA and functional genes).
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iNAP (integrated Network Analysis Pipeline)
This analysis pipeline is built and maintained by Metagenomics for Environmental Microbiology (MEM) (Deng Lab) and it is used to model, analyze and manage the the Molecular Ecological Networks (MENs) for adjacent matrix and Inter-Domain Ecological Networks (IDENs) for bipartite matrix from metagenomic datasets, e.g. GeoChip and Sequencing, and synchronous plant surveys, including Molecular Ecological Network Analysis (MENA) Pipeline and InterDomain Ecological Network Analysis Pipeline (IDENAP).
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Rapid DEgenerate Primer design program
This analysis pipeline is built by Deng Lab. It is used for sequence database management and primer assessment.
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Antibiotic Resistance Gene Analyzer (ARGA)
This pipeline is used for antibiotic resistance genes (ARGs) analysis based on the Sequence Database for ARGs (SDARG).
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Nitrogen Cycling Functional Gene Analyzer (NcycFunGen)
This pipeline is used for nitrogen functional gene analysis based on the Sequence Database for NcycFunGen.
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CoBacFM: Core Bacteria Forecast Model for Global Grassland pH Dynamics under Future Climate Warming Scenarios

Kai Feng, Shang Wang, Qing He, Michael Bonkowski, Mohammad Bahram, Etienne Yergeau, Zhujun Wang, Xi Peng, Danrui Wang, Shuzhen Li, Yingcheng Wang, Zhicheng Ju, Xiongfeng Du, Chengliang Yan, Songsong Gu, Tong Li, Xingsheng Yang, Wenli Shen, Ziyan Wei, Qiulong Hu, Guangxin Lu, Clara Qin, Gengxin Zhang, Chunwang Xiao, Yunfeng Yang, Jizhong Zhou, Ye Deng*. One Earth, 2024,
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